net.sf.basedb.core.data
Class SpotImagesData

java.lang.Object
  net.sf.basedb.core.data.BasicData
      net.sf.basedb.core.data.SpotImagesData

All Implemented Interfaces:

IdentifiableData

public class SpotImagesData
extends BasicData

This class holds information about the settiings used to generate spot images for a raw bio assay.

Version:

2.0

Author:

Nicklas

See Also:

SpotImages, Hybridzations and raw data overview

Last modified

$Date: 2009-04-06 14:52:39 +0200 (Mon, 06 Apr 2009) $

Hibernate: class

table="`SpotImages`" lazy="false"

Field Summary

private FileData	blueImageFile
private float	gamma
private FileData	greenImageFile
private float	quality
private RawBioAssayData	rawBioAssay
private FileData	redImageFile
private FileData	spotImagesFile
private int	spotsize
private int	xOffset
private int	xScale
private int	yOffset
private int	yScale

Constructor Summary

SpotImagesData()

Method Summary

FileData	getBlueImageFile() The file used for the blue component in the spot images.
float	getGamma() The gamma correction value.
FileData	getGreenImageFile() The file used for the green component in the spot images.
float	getQuality() The quality setting for the spot images.
RawBioAssayData	getRawBioAssay() Get the scan that produced this image.
FileData	getRedImageFile() The file used for the red component in the spot images.
FileData	getSpotImagesFile() The file containing the spot images.
int	getSpotsize() The size of the spots.
int	getXOffset() Get the x-axis offset.
int	getXScale() Get the x-axis scale.
int	getYOffset() The y-axis offset.
int	getYScale() Get the y-axis scale.
void	setBlueImageFile(FileData blueImageFile)
void	setGamma(float gamma)
void	setGreenImageFile(FileData greenImageFile)
void	setQuality(float quality)
void	setRawBioAssay(RawBioAssayData rawBioAssay)
void	setRedImageFile(FileData redImageFile)
void	setSpotImagesFile(FileData spotImagesFile)
void	setSpotsize(int spotsize)
void	setXOffset(int xOffset)
void	setXScale(int xScale)
void	setYOffset(int yOffset)
void	setYScale(int yScale)

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

rawBioAssay

private RawBioAssayData rawBioAssay

xScale

private int xScale

yScale

private int yScale

xOffset

private int xOffset

yOffset

private int yOffset

spotsize

private int spotsize

quality

private float quality

gamma

private float gamma

redImageFile

private FileData redImageFile

greenImageFile

private FileData greenImageFile

blueImageFile

private FileData blueImageFile

spotImagesFile

private FileData spotImagesFile

Constructor Detail

SpotImagesData

public SpotImagesData()

Method Detail

getRawBioAssay

public RawBioAssayData getRawBioAssay()

Get the scan that produced this image.

Hibernate: many-to-one

column="`rawbioassay_id`" not-null="true" unique="true" update="false"

setRawBioAssay

public void setRawBioAssay(RawBioAssayData rawBioAssay)

getXScale

public int getXScale()

Get the x-axis scale.

Hibernate: property

column="`x_scale`" type="int" not-null="true"

setXScale

public void setXScale(int xScale)

getYScale

public int getYScale()

Get the y-axis scale.

Hibernate: property

column="`y_scale`" type="int" not-null="true"

setYScale

public void setYScale(int yScale)

getXOffset

public int getXOffset()

Get the x-axis offset.

Hibernate: property

column="`x_offset`" type="int" not-null="true"

setXOffset

public void setXOffset(int xOffset)

getYOffset

public int getYOffset()

The y-axis offset.

Hibernate: property

column="`y_offset`" type="int" not-null="true"

setYOffset

public void setYOffset(int yOffset)

getSpotsize

public int getSpotsize()

The size of the spots.

Hibernate: property

column="`spotsize`" type="int" not-null="true"

setSpotsize

public void setSpotsize(int spotsize)

getQuality

public float getQuality()

The quality setting for the spot images. A value between 0.0 and 1.0.

Hibernate: property

column="`quality`" type="float" not-null="true"

setQuality

public void setQuality(float quality)

getGamma

public float getGamma()

The gamma correction value.

Hibernate: property

column="`gamma`" type="float" not-null="true"

setGamma

public void setGamma(float gamma)

getRedImageFile

public FileData getRedImageFile()

The file used for the red component in the spot images.

Hibernate: many-to-one

column="`redfile_id`" not-null="false" outer-join="false"

setRedImageFile

public void setRedImageFile(FileData redImageFile)

getGreenImageFile

public FileData getGreenImageFile()

The file used for the green component in the spot images.

Hibernate: many-to-one

column="`greenfile_id`" not-null="false" outer-join="false"

setGreenImageFile

public void setGreenImageFile(FileData greenImageFile)

getBlueImageFile

public FileData getBlueImageFile()

The file used for the blue component in the spot images.

Hibernate: many-to-one

column="`bluefile_id`" not-null="false" outer-join="false"

setBlueImageFile

public void setBlueImageFile(FileData blueImageFile)

getSpotImagesFile

public FileData getSpotImagesFile()

The file containing the spot images.

Hibernate: many-to-one

column="`spotimagesfile_id`" not-null="false" outer-join="false"

setSpotImagesFile

public void setSpotImagesFile(FileData spotImagesFile)