net.sf.basedb.core.data
Class ScanData

java.lang.Object
  net.sf.basedb.core.data.BasicData
      net.sf.basedb.core.data.OwnedData
          net.sf.basedb.core.data.SharedData
              net.sf.basedb.core.data.CommonData
                  net.sf.basedb.core.data.AnnotatedData
                      net.sf.basedb.core.data.ScanData

All Implemented Interfaces:

AnnotatableData, IdentifiableData, LoggableData, NameableData, OwnableData, RegisteredData, RemovableData, ShareableData

public class ScanData
extends AnnotatedData
implements RegisteredData

This class holds information about an scan.

Version:

2.0

Author:

Nicklas

See Also:

Scan, Hybridzations and raw data overview

Last modified

$Date: 2009-04-06 14:52:39 +0200 (Mon, 06 Apr 2009) $

Hibernate: class

table="`Scans`" lazy="false"

Field Summary

private Date	entryDate
private HybridizationData	hybridization
private Set<ImageData>	images
private ProtocolData	protocol
private Set<RawBioAssayData>	rawBioAssays
private HardwareData	scanner

Fields inherited from interface net.sf.basedb.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

ScanData()

Method Summary

Date	getEntryDate() Get the date this item was added to the database.
HybridizationData	getHybridization() Get the hybridization.
(package private) Set<ImageData>	getImages() This is the inverse end.
ProtocolData	getProtocol() Get the protocol used while scanning.
(package private) Set<RawBioAssayData>	getRawBioAssays() This is the inverse end.
HardwareData	getScanner() Get the hardware, ie. scanner, used to scan the images.
void	setEntryDate(Date entryDate)
void	setHybridization(HybridizationData hybridization)
(package private) void	setImages(Set<ImageData> images)
void	setProtocol(ProtocolData protocol)
(package private) void	setRawBioAssays(Set<RawBioAssayData> rawBioAssays)
void	setScanner(HardwareData scanner)

Methods inherited from class net.sf.basedb.core.data.AnnotatedData

getAnnotationSet, setAnnotationSet

Methods inherited from class net.sf.basedb.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class net.sf.basedb.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class net.sf.basedb.core.data.OwnedData

getOwner, setOwner

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.basedb.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface net.sf.basedb.core.data.OwnableData

getOwner, setOwner

Field Detail

entryDate

private Date entryDate

hybridization

private HybridizationData hybridization

scanner

private HardwareData scanner

protocol

private ProtocolData protocol

images

private Set<ImageData> images

rawBioAssays

private Set<RawBioAssayData> rawBioAssays

Constructor Detail

ScanData

public ScanData()

Method Detail

getEntryDate

public Date getEntryDate()

Description copied from interface: RegisteredData

Get the date this item was added to the database. The value is generated at creation time and can't be modified later.

Specified by:

getEntryDate in interface RegisteredData

setEntryDate

public void setEntryDate(Date entryDate)

getHybridization

public HybridizationData getHybridization()

Get the hybridization.

Hibernate: many-to-one

column="`hybridization_id`" not-null="true" outer-join="false"

setHybridization

public void setHybridization(HybridizationData hybridization)

getScanner

public HardwareData getScanner()

Get the hardware, ie. scanner, used to scan the images.

Hibernate: many-to-one

column="`hardware_id`" not-null="false" outer-join="false"

setScanner

public void setScanner(HardwareData scanner)

getProtocol

public ProtocolData getProtocol()

Get the protocol used while scanning.

Hibernate: many-to-one

column="`protocol_id`" not-null="false" outer-join="false"

setProtocol

public void setProtocol(ProtocolData protocol)

getImages

Set<ImageData> getImages()

This is the inverse end.

See Also:

ImageData.getScan()

Hibernate: set

lazy="true" inverse="true" cascade="delete"

Hibernate: collection-key

column="`scan_id`"

Hibernate: collection-one-to-many

class="net.sf.basedb.core.data.ImageData"

setImages

void setImages(Set<ImageData> images)

getRawBioAssays

Set<RawBioAssayData> getRawBioAssays()

This is the inverse end.

See Also:

RawBioAssayData.getScan()

Hibernate: set

lazy="true" inverse="true"

Hibernate: collection-key

column="`scan_id`"

Hibernate: collection-one-to-many

class="net.sf.basedb.core.data.RawBioAssayData"

setRawBioAssays

void setRawBioAssays(Set<RawBioAssayData> rawBioAssays)