Timeline



Oct 31, 2014:

11:13 AM Ticket #1878 (Reduce memory footprint in raw data importer) closed by Nicklas Nordborg
fixed: (In [6586]) Fixes #1878: Reduce memory footprint in raw data importer …
11:13 AM Changeset [6586] by Nicklas Nordborg
Fixes #1878: Reduce memory footprint in raw data importer …
10:43 AM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) updated by Nicklas Nordborg
(In [6585]) References #1873: Deleting child biomaterial doesn't …
10:43 AM Changeset [6585] by Nicklas Nordborg
References #1873: Deleting child biomaterial doesn't return the used …
10:26 AM Ticket #1880 (Remove db.dynamic.catalog setting for PostgreSQL section) closed by Nicklas Nordborg
fixed: (In [6584]) Fixes #1880: Remove db.dynamic.catalog setting for …
10:26 AM Changeset [6584] by Nicklas Nordborg
Fixes #1880: Remove db.dynamic.catalog setting for PostgreSQL section
10:25 AM Ticket #1880 (Remove db.dynamic.catalog setting for PostgreSQL section) created by Nicklas Nordborg
This setting is optional, but if specified it MUST be the same as the …
10:17 AM Ticket #1878 (Reduce memory footprint in raw data importer) updated by Nicklas Nordborg
I have made some more tests after replacing a feature/reporter objects …
9:48 AM Ticket #1879 (Exception in expression builder dialog) closed by Nicklas Nordborg
invalid: Seems to be a bug in Tomcat which has been resolved in 7.0.55 (among …
9:24 AM Ticket #1879 (Exception in expression builder dialog) created by Nicklas Nordborg
Just go to any formula, edit, and open expression builder: […] …
9:21 AM Ticket #1878 (Reduce memory footprint in raw data importer) updated by Nicklas Nordborg
This was tested with the UCSC_hg38_knownGenes_22sep2014 array design …
9:16 AM Ticket #1878 (Reduce memory footprint in raw data importer) created by Nicklas Nordborg
The memory footprint of the raw data importer can be up to several …
7:52 AM Ticket #1877 (Selecting 'none' for array design when creating a raw bioassay still ...) closed by Nicklas Nordborg
fixed: (In [6583]) Fixes #1877: Selecting 'none' for array design when …
7:52 AM Changeset [6583] by Nicklas Nordborg
Fixes #1877: Selecting 'none' for array design when creating a raw …
7:46 AM Ticket #1877 (Selecting 'none' for array design when creating a raw bioassay still ...) created by Nicklas Nordborg
* Create a project and activate it. * Create an array design and set …

Oct 29, 2014:

12:38 PM Ticket #1876 (Delay preloading array design feature in raw data batcher) closed by Nicklas Nordborg
fixed: (In [6582]) Fixes #1876: Delay preloading array design feature in raw …
12:38 PM Changeset [6582] by Nicklas Nordborg
Fixes #1876: Delay preloading array design feature in raw data batcher
11:52 AM Ticket #1876 (Delay preloading array design feature in raw data batcher) created by Nicklas Nordborg
The current implementation preload array design features immediately …
10:49 AM Ticket #1875 (Abort multiple jobs) closed by Nicklas Nordborg
fixed: (In [6581]) Fixes #1875: Abort multiple jobs
10:49 AM Changeset [6581] by Nicklas Nordborg
Fixes #1875: Abort multiple jobs
10:26 AM Ticket #1875 (Abort multiple jobs) created by Nicklas Nordborg
Now that we have extensions …

Oct 28, 2014:

7:50 AM Ticket #1874 (Please wait. The annotations are loading...) closed by Nicklas Nordborg
fixed: (In [6580]) Fixes #1874: Please wait. The annotations are loading... …
7:50 AM Changeset [6580] by Nicklas Nordborg
Fixes #1874: Please wait. The annotations are loading... Use …
7:41 AM Ticket #1874 (Please wait. The annotations are loading...) updated by Nicklas Nordborg
Same problem with the "Change history" and "Overview" tabs.
7:39 AM Ticket #1874 (Please wait. The annotations are loading...) created by Nicklas Nordborg
1. View a single item that is annotatable and change to the …
7:31 AM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) closed by Nicklas Nordborg
fixed: (In [6579]) Fixes #1873: Deleting child biomaterial doesn't return the …
7:31 AM Changeset [6579] by Nicklas Nordborg
Fixes #1873: Deleting child biomaterial doesn't return the used …

Oct 24, 2014:

2:15 PM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) updated by Nicklas Nordborg
(In [6578]) References #1873: Deleting child biomaterial doesn't …
2:15 PM Changeset [6578] by Nicklas Nordborg
References #1873: Deleting child biomaterial doesn't return the used …
12:45 PM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) updated by Nicklas Nordborg
(In [6577]) References #1873: Deleting child biomaterial doesn't …
12:45 PM Changeset [6577] by Nicklas Nordborg
References #1873: Deleting child biomaterial doesn't return the used …
11:35 AM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) updated by Nicklas Nordborg
I have investigated this and found a problem resulting from #1759. …
11:17 AM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) updated by Nicklas Nordborg
Once this is fixed we also need to create a procedure for …
11:16 AM Ticket #1873 (Deleting child biomaterial doesn't return the used quantity to the parent) created by Nicklas Nordborg
1. Create a sample S1 and set original quantity to 500. 2. Create a …

Oct 22, 2014:

6:41 PM Changeset [6576] by Nicklas Nordborg
Merged patch release 3.3.2 to the trunk.
6:34 PM Milestone BASE 3.3.2 completed
Bug fixes for 3.3.1 Revision Log: log:branches/3.3-stable@6537:6574
4:28 PM DownloadPage edited by Nicklas Nordborg
Released BASE 3.3.2 (diff)
4:26 PM Changeset [6575] by Nicklas Nordborg
Changes for future release 3.3.3
4:19 PM Changeset [6574] by Nicklas Nordborg
Tagging BASE 3.3.2
4:13 PM Changeset [6573] by Nicklas Nordborg
Preparing to relase BASE 3.3.2
4:11 PM Changeset [6572] by Nicklas Nordborg
Adding Bob to list of contributors. Thanks for providing us with lots …
9:48 AM Ticket #1872 (The "Calendar" button on the Edit sample page does not work) closed by Nicklas Nordborg
fixed: (In [6571]) Fixes #1872: The "Calendar" button on the Edit sample page …
9:48 AM Changeset [6571] by Nicklas Nordborg
Fixes #1872: The "Calendar" button on the Edit sample page does not work
9:48 AM Ticket #1872 (The "Calendar" button on the Edit sample page does not work) updated by Nicklas Nordborg
Don't think any calendar button at all is working... The problem is …
9:30 AM Ticket #1872 (The "Calendar" button on the Edit sample page does not work) created by Nicklas Nordborg
Nothing happens and no error messaged in debug console.
7:55 AM Ticket #1867 (Prevent browsers from caching scripts and style sheets between releases) updated by Nicklas Nordborg
(In [6570]) References #1867: Prevent browsers from caching scripts …
7:55 AM Changeset [6570] by Nicklas Nordborg
References #1867: Prevent browsers from caching scripts and style …

Oct 21, 2014:

1:56 PM Ticket #1871 (Make it possible to explicitely set plug-in version on jobs) updated by Nicklas Nordborg
(In [6569]) References #1871: Make it possible to explicitely set …
1:56 PM Changeset [6569] by Nicklas Nordborg
References #1871: Make it possible to explicitely set plug-in version …
1:07 PM Ticket #1840 (Filter annotations on the Annotations tab based on subtype of item) closed by Nicklas Nordborg
fixed: (In [6568]) Fixes #1840: Filter annotations on the Annotations tab …
1:07 PM Changeset [6568] by Nicklas Nordborg
Fixes #1840: Filter annotations on the Annotations tab based on …
10:01 AM Ticket #1843 (Use snapshot manager to load annotations on list pages) closed by Nicklas Nordborg
fixed
10:00 AM Ticket #1843 (Use snapshot manager to load annotations on list pages) updated by Nicklas Nordborg
(In [6567]) References #1843: Use snapshot manager to load annotations …
10:00 AM Changeset [6567] by Nicklas Nordborg
References #1843: Use snapshot manager to load annotations on list …
8:07 AM Ticket #1871 (Make it possible to explicitely set plug-in version on jobs) closed by Nicklas Nordborg
fixed: (In [6566]) Fixes #1871: Make it possible to explicitely set plug-in …
8:07 AM Changeset [6566] by Nicklas Nordborg
Fixes #1871: Make it possible to explicitely set plug-in version on jobs
7:57 AM Ticket #1871 (Make it possible to explicitely set plug-in version on jobs) created by Nicklas Nordborg
Jobs that are executed by plug-ins automatically get the …

Oct 15, 2014:

11:03 AM WikiStart edited by Jari Häkkinen
BASE demo server up again (diff)
8:18 AM Ticket #1870 (Using the "Check/Uncheck" icon in the file list doesn't really select ...) closed by Nicklas Nordborg
fixed: (In [6565]) Fixes #1870: Using the "Check/Uncheck" icon in the file …
8:18 AM Changeset [6565] by Nicklas Nordborg
Fixes #1870: Using the "Check/Uncheck" icon in the file list doesn't …
8:08 AM Ticket #1870 (Using the "Check/Uncheck" icon in the file list doesn't really select ...) created by Nicklas Nordborg
The checkboxes are checked but the space at the bottom is not filled …
8:06 AM Ticket #1869 (Return number of selected items in a list) updated by Nicklas Nordborg
Summary changed
8:05 AM Ticket #1869 (Return number of selected items in a list) closed by Nicklas Nordborg
fixed: (In [6564]) Fixes #1869: Return selected items as a list Implemented …
8:05 AM Changeset [6564] by Nicklas Nordborg
Fixes #1869: Return selected items as a list Implemented this in a …

Oct 14, 2014:

8:23 PM Ticket #1869 (Return number of selected items in a list) created by Nicklas Nordborg
When selecting items from a list in the GUI, the selected items are …
8:15 AM Ticket #1868 (Warn about using deprecated javascript API) closed by Nicklas Nordborg
fixed: (In [6563]) Fixes #1868: Warn about using deprecated javascript API
8:15 AM Changeset [6563] by Nicklas Nordborg
Fixes #1868: Warn about using deprecated javascript API
7:53 AM Ticket #1867 (Prevent browsers from caching scripts and style sheets between releases) closed by Nicklas Nordborg
fixed: (In [6562]) Fixes #1867: Prevent browsers from caching scripts and …
7:53 AM Changeset [6562] by Nicklas Nordborg
Fixes #1867: Prevent browsers from caching scripts and style sheets …

Oct 13, 2014:

8:17 PM Ticket #1868 (Warn about using deprecated javascript API) created by Nicklas Nordborg
In BASE 3.3 a lot of the old javascript API was modified and only a …
8:14 PM Ticket #1867 (Prevent browsers from caching scripts and style sheets between releases) created by Nicklas Nordborg
Usually, caching is a good thing since the scripts and style sheets …
8:26 AM Ticket #1866 (Warn about use of deprecated methods in taglibs and extensions) updated by Nicklas Nordborg
(In [6561]) References #1866: Warn about use of deprecated methods in …
8:26 AM Changeset [6561] by Nicklas Nordborg
References #1866: Warn about use of deprecated methods in taglibs and …
8:25 AM Ticket #1866 (Warn about use of deprecated methods in taglibs and extensions) closed by Nicklas Nordborg
fixed: (In [6560]) Fixes #1866: Warn about use of deprecated methods in …
8:25 AM Changeset [6560] by Nicklas Nordborg
Fixes #1866: Warn about use of deprecated methods in taglibs and extensions
8:18 AM Ticket #1866 (Warn about use of deprecated methods in taglibs and extensions) created by Nicklas Nordborg
Methods such as 'setOnClick', etc will be removed in BASE 3.5 (#1813) …

Oct 10, 2014:

8:49 AM Ticket #1865 (Allow LEFT, RIGHT and DELETE keys in numeric fields) closed by Nicklas Nordborg
fixed: (In [6559]) Fixes #1865: Allow LEFT, RIGHT and DELETE keys in numeric …
8:49 AM Changeset [6559] by Nicklas Nordborg
Fixes #1865: Allow LEFT, RIGHT and DELETE keys in numeric fields
8:47 AM Ticket #1865 (Allow LEFT, RIGHT and DELETE keys in numeric fields) updated by Nicklas Nordborg
Hmm... seems like this is a Firefox only issue. Internet explorer …
8:34 AM Ticket #1865 (Allow LEFT, RIGHT and DELETE keys in numeric fields) created by Nicklas Nordborg
It is a bit annoying since a user can only move the cursor with the mouse.

Oct 8, 2014:

10:43 AM WikiStart edited by Nicklas Nordborg
No demo server due to base2.thep.lu.se is shutting down (diff)
10:41 AM Ticket #1864 (New location of BASE release files) closed by Nicklas Nordborg
fixed: (In [6558]) Fixes #1864: New location of BASE release files Test code …
10:41 AM Changeset [6558] by Nicklas Nordborg
Fixes #1864: New location of BASE release files Test code that used …
9:59 AM Ticket #1864 (New location of BASE release files) created by Nicklas Nordborg
Moved from http://base2.thep.lu.se/base/ to …
9:51 AM ReleaseProcedure edited by Nicklas Nordborg
BASE releases moved to a new location (diff)
9:45 AM DownloadOld edited by Nicklas Nordborg
BASE releases moved to a new location (diff)
9:43 AM DownloadPage edited by Nicklas Nordborg
BASE releases moved to a new location (diff)

Oct 7, 2014:

2:35 PM Ticket #1862 (If() formula can't return null value) closed by Nicklas Nordborg
fixed: (In [6557]) Fixes #1862: If() formula can't return null value
2:35 PM Changeset [6557] by Nicklas Nordborg
Fixes #1862: If() formula can't return null value
2:08 PM Ticket #1863 (The configure columns dialog is too small) closed by Nicklas Nordborg
fixed: (In [6556]) Fixes #1863: The configure columns dialog is too small
2:08 PM Changeset [6556] by Nicklas Nordborg
Fixes #1863: The configure columns dialog is too small
2:06 PM Ticket #1863 (The configure columns dialog is too small) created by Nicklas Nordborg
I get a vertical scroll bar.
2:06 PM Ticket #1861 (Formula edit dialog is too small) closed by Nicklas Nordborg
fixed: (In [6555]) Fixes #1861: Formula edit dialog is too small
2:06 PM Changeset [6555] by Nicklas Nordborg
Fixes #1861: Formula edit dialog is too small
2:04 PM Ticket #1862 (If() formula can't return null value) created by Nicklas Nordborg
Create an 'Intensity expression' formula with for example: […] …
2:01 PM Ticket #1861 (Formula edit dialog is too small) created by Nicklas Nordborg
Scrollbars are displayed in both directions.
8:54 AM Ticket #1852 (Use AJAX to update footnote instead of page reloading) updated by Nicklas Nordborg
(In [6554]) References #1852: Use AJAX to update footnote instead of …
8:54 AM Changeset [6554] by Nicklas Nordborg
References #1852: Use AJAX to update footnote instead of page …

Oct 6, 2014:

3:06 PM Ticket #1848 (Possible intermittent bug in "test with file" interface (Firefox with ...) updated by base
Thanks Nicklas. We will keep you posted with any further diagnosis or …

Oct 3, 2014:

7:45 AM Ticket #1860 (File edit dialog is too small) closed by Nicklas Nordborg
fixed: (In [6553]) Fixes #1860: File edit dialog is too small
7:45 AM Changeset [6553] by Nicklas Nordborg
Fixes #1860: File edit dialog is too small
7:39 AM Ticket #1860 (File edit dialog is too small) created by Nicklas Nordborg
The description field is causing a vertical scrollbar to appear.

Oct 2, 2014:

2:14 PM Ticket #1859 (Add support for installing configurations for other plug-ins than what ...) closed by Nicklas Nordborg
fixed: (In [6552]) Fixes #1859: Add support for installing configurations for …
2:14 PM Changeset [6552] by Nicklas Nordborg
Fixes #1859: Add support for installing configurations for other …
1:51 PM Ticket #1859 (Add support for installing configurations for other plug-ins than what ...) updated by Nicklas Nordborg
(In [6551]) References #1859: Add support for installing …
1:51 PM Changeset [6551] by Nicklas Nordborg
References #1859: Add support for installing configurations for other …
1:34 PM Ticket #1859 (Add support for installing configurations for other plug-ins than what ...) created by Nicklas Nordborg
Thought this was implemented already... but it doesn't work and …
12:57 PM Ticket #1852 (Use AJAX to update footnote instead of page reloading) updated by Nicklas Nordborg
(In [6550]) References #1852: Use AJAX to update footnote instead of …
12:57 PM Changeset [6550] by Nicklas Nordborg
References #1852: Use AJAX to update footnote instead of page …
11:47 AM Ticket #1858 (Raw data importer report skipped lines twice) closed by Nicklas Nordborg
fixed
11:47 AM Ticket #1858 (Raw data importer report skipped lines twice) updated by Nicklas Nordborg
(In [6549]) References #1858: Raw data importer report skipped lines twice
11:47 AM Changeset [6549] by Nicklas Nordborg
References #1858: Raw data importer report skipped lines twice
11:44 AM Ticket #1858 (Raw data importer report skipped lines twice) created by Nicklas Nordborg
For example: […] In this case, 17588 spots are skipped but are …
11:35 AM Ticket #1857 (Lots and lots of files in the "recently used" files list in job ...) closed by Nicklas Nordborg
fixed: (In [6548]) Fixes #1857: Lots and lots of files in the "recently used" …
11:35 AM Changeset [6548] by Nicklas Nordborg
Fixes #1857: Lots and lots of files in the "recently used" files list …
11:33 AM lots-of-files.png attached to Ticket #1857 by Nicklas Nordborg
11:33 AM Ticket #1857 (Lots and lots of files in the "recently used" files list in job ...) created by Nicklas Nordborg
File input fields in the job configuration dialog have a "Recently …
11:29 AM Ticket #1856 (Auto-detect file format selection dialog may get too big input fields) closed by Nicklas Nordborg
fixed: (In [6547]) Fixes #1856: Auto-detect file format selection dialog may …
11:29 AM Changeset [6547] by Nicklas Nordborg
Fixes #1856: Auto-detect file format selection dialog may get too big …
11:23 AM select-file-in-job.png attached to Ticket #1856 by Nicklas Nordborg
11:22 AM Ticket #1856 (Auto-detect file format selection dialog may get too big input fields) updated by Nicklas Nordborg
There is also a similar issue in the job configuration dialog when …
11:17 AM auto-detect-file-format.png attached to Ticket #1856 by Nicklas Nordborg
11:17 AM Ticket #1856 (Auto-detect file format selection dialog may get too big input fields) created by Nicklas Nordborg
If the suggested file paths are long the input fields will expand …
11:13 AM Ticket #1855 (ItemNotFoundException when creating a new raw bioassay) closed by Nicklas Nordborg
fixed: (In [6546]) Fixes #1855: ItemNotFoundException when creating a new raw …
11:13 AM Changeset [6546] by Nicklas Nordborg
Fixes #1855: ItemNotFoundException when creating a new raw bioassay
10:50 AM Ticket #1855 (ItemNotFoundException when creating a new raw bioassay) created by Nicklas Nordborg
The error message is: […] The array design referenced in the error …

Oct 1, 2014:

2:48 PM Ticket #1854 (Can't filter or sort on Cufflinks FPKM hi column) closed by Nicklas Nordborg
fixed: (In [6545]) Fixes #1854: Can't filter or sort on Cufflinks FPKM hi …
2:48 PM Changeset [6545] by Nicklas Nordborg
Fixes #1854: Can't filter or sort on Cufflinks FPKM hi column Added …
2:44 PM Ticket #1854 (Can't filter or sort on Cufflinks FPKM hi column) updated by Nicklas Nordborg
Description changed
2:44 PM Ticket #1854 (Can't filter or sort on Cufflinks FPKM hi column) created by Nicklas Nordborg
Gives error message: […] Problem is that …
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