Timeline
Nov 1, 2011:
- 7:02 PM Ticket #523 (Write "Overview of BASE" section in Overview part) closed by
- fixed: (In [5846]) Fixes #523.
- 7:02 PM Changeset [5846] by
- Fixes #523.
- 5:58 PM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
- (In [5845]) Addresses #523.
- 5:58 PM Changeset [5845] by
- Addresses #523.
- 5:05 PM Ticket #522 (Write "Why use BASE" section) closed by
- fixed: (In [5844]) Fixes #522. After five years …
- 5:05 PM Changeset [5844] by
- Fixes #522. After five years …
- 3:46 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) closed by
- fixed: (In [5843]) Fixes #1646: Table exporter should use .csv and .xml file …
- 3:46 PM Changeset [5843] by
- Fixes #1646: Table exporter should use .csv and .xml file extensions …
- 3:37 PM Ticket #1637 (Test BASE with PostgreSQL 9) closed by
- fixed: (In [5842]) Fixes #1637: Test BASE with PostgreSQL 9 Documented that …
- 3:37 PM Changeset [5842] by
- Fixes #1637: Test BASE with PostgreSQL 9 Documented that we only …
- 3:35 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
-
Milestone changed
- 2:57 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) created by
-
The current implementation give all files a
.txtextension which is … - 2:26 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
- Turns out that I have been using PostgreSQL 9.1.1 for more or less all …
- 2:13 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
-
Status, Owner changed
- 2:11 PM Ticket #1636 (Test BASE with Tomcat 7) closed by
- fixed: (In [5841]) Fixes #1636: Test BASE with Tomcat 7 Updated …
- 2:11 PM Changeset [5841] by
- Fixes #1636: Test BASE with Tomcat 7 Updated documentation with …
- 1:39 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- The XJSP compiler still doesn't work: […] It seems like the …
- 1:28 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- (In [5840]) References #1636: Test BASE with Tomcat 7 Using a private …
- 1:28 PM Changeset [5840] by
- References #1636: Test BASE with Tomcat 7 Using a private logger …
- 1:20 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- The extensions system seems to be working fine, except for the XJSP …
- 1:12 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
-
Milestone changed
- 1:12 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- (In [5839]) References #1636: Test BASE with Tomcat 7 Fixes JSP …
- 1:12 PM Changeset [5839] by
- References #1636: Test BASE with Tomcat 7 Fixes JSP compilation problems.
- 1:02 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- There are four JSP files that can't be compiled (using the …
- 12:59 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- It seems to be working fairly good. Tomcat is able to start and it is …
- 12:11 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
-
Status, Owner changed
- 12:11 PM Ticket #1635 (Test BASE with Java 7) updated by
-
Milestone changed
- 12:10 PM Ticket #1635 (Test BASE with Java 7) closed by
- fixed: (In [5838]) Fixes #1635: Test BASE with Java 7 BASE itself seems to …
- 12:10 PM Changeset [5838] by
- Fixes #1635: Test BASE with Java 7 BASE itself seems to be working …
- 12:06 PM BuildingBase edited by
- Added information about compiling BASE with Java 7 (#1635) (diff)
- 9:31 AM Ticket #1618 (Improve "Reporter search" performance in experiment explorer) closed by
- fixed: Tested with some data from the production server. Except for the …
- 8:43 AM Ticket #1635 (Test BASE with Java 7) updated by
- Using BASE compiled with Java 1.6 seems to be working fine with Java …
- 8:24 AM Ticket #1635 (Test BASE with Java 7) updated by
- Compiling with 1.7 generates a warning: […] This is because the …
Oct 31, 2011:
- 2:57 PM Ticket #1635 (Test BASE with Java 7) updated by
-
Owner, Status changed
- 1:02 PM Ticket #1615 (Add test program in BASE 2.17 that create data that need special ...) closed by
- fixed
- 1:02 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) closed by
- fixed
- 1:02 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 1:00 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5837]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 1:00 PM Changeset [5837] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Create a …
Oct 28, 2011:
- 11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) closed by
- fixed: (In [5836]) Fixes #1645: Enable sorting and filtering on free wells …
- 11:36 AM Changeset [5836] by
- Fixes #1645: Enable sorting and filtering on free wells column in …
- 11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) created by
- This is mentioned in #1573, but was never implemented.
- 11:32 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5835]) References #1592: Unified installation procedure for …
- 11:32 AM Changeset [5835] by
- References #1592: Unified installation procedure for plug-ins, …
Oct 27, 2011:
- 2:53 PM Ticket #599 (Write "Appendix: migrate.properties reference") updated by
-
Milestone changed
- 2:52 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5834]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:52 PM Changeset [5834] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Added a short …
- 2:40 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5833]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:40 PM Changeset [5833] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Check login …
- 11:19 AM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5832]) References #1153: Handling short read transcript sequence …
- 11:19 AM Changeset [5832] by
- References #1153: Handling short read transcript sequence data Batch …
- 10:45 AM DeveloperInformation edited by
- Typo (diff)
- 9:20 AM MinorReleaseTest edited by
- (diff)
- 9:20 AM MinorReleaseTest edited by
- (diff)
- 9:16 AM Changeset [5831] by
- Removed unused import.
- 9:13 AM Ticket #1153 (Handling short read transcript sequence data) closed by
- fixed
- 9:13 AM Ticket #1590 (Documentation cleanup) closed by
- fixed
- 9:13 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5830]) References #1590: Documentation cleanup Some final …
- 9:13 AM Changeset [5830] by
- References #1590: Documentation cleanup Some final updates to the …
- 8:16 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
- (In [5829]) References #1641: Use bcrypt for storing passwords instead …
- 8:16 AM Changeset [5829] by
- References #1641: Use bcrypt for storing passwords instead of MD5 …
Oct 26, 2011:
- 2:17 PM Ticket #1644 (Make experiments annotable) created by
- For background information see: …
- 2:12 PM Ticket #1643 (Automatic fixes in "Item overview") created by
- The validation that is performed in the "Item overview" can usually …
- 2:06 PM Ticket #1642 (Add support for column mapping that selects a project default item in ...) updated by
-
Description changed
- 2:06 PM Ticket #1642 (Add support for column mapping that selects a project default item in ...) created by
- If a property is not mapped to a column in the batch item importers …
- 1:56 PM Ticket #599 (Write "Appendix: migrate.properties reference") closed by
- wontfix: The migration program was removed a long time ago.
- 1:50 PM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) closed by
- fixed: (In [5828]) Fixes #1641: Use bcrypt for storing passwords instead of …
- 1:50 PM Changeset [5828] by
- Fixes #1641: Use bcrypt for storing passwords instead of MD5 This …
- 12:51 PM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
- (In [5827]) References #1641: Use bcrypt for storing passwords instead …
- 12:51 PM Changeset [5827] by
- References #1641: Use bcrypt for storing passwords instead of MD5 …
- 10:47 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
-
Owner, Status changed
- 10:47 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5826]) References #1590: Documentation cleanup Updated diagram …
- 10:47 AM Changeset [5826] by
- References #1590: Documentation cleanup Updated diagram and text …
- 10:46 AM Ticket #1640 (Use a salt value when storing hashed passwords) updated by
-
Milestone changed
- 10:40 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
-
Description changed
- 10:39 AM Ticket #1640 (Use a salt value when storing hashed passwords) closed by
- wontfix: Replaced by #1641.
- 10:39 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) created by
- This ticket replaces #1640. See …
- 10:27 AM Ticket #1640 (Use a salt value when storing hashed passwords) updated by
- It seems like using a salt is not good enough. Brute-force attacks of …
Oct 25, 2011:
- 8:27 PM Ticket #1640 (Use a salt value when storing hashed passwords) created by
- The current implementation store passwords to BASE as MD5 hash values. …
- 3:21 PM Tickets #522,523 batch updated by
- (In [5825]) Addresses #522 and #523.
- 3:21 PM Changeset [5825] by
- Addresses #522 and #523.
- 2:27 PM Tickets #522,523 batch updated by
- (In [5824]) Addresses #522 and #523.
- 2:27 PM Changeset [5824] by
- Addresses #522 and #523.
- 2:22 PM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
-
Milestone, Status, Owner changed
- 2:22 PM Ticket #522 (Write "Why use BASE" section) updated by
-
Status, Milestone, Owner changed
Oct 24, 2011:
- 3:02 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5823]) References #1590: Documentation cleanup Fixed javadoc …
- 3:02 PM Changeset [5823] by
- References #1590: Documentation cleanup Fixed javadoc warnings.
- 1:44 PM Ticket #1575 (Add support for authenticator plug-in in external JAR files) closed by
- fixed
- 1:44 PM Ticket #1575 (Add support for authenticator plug-in in external JAR files) updated by
- (In [5822]) References #1575: Add support for authenticator plug-in in …
- 1:44 PM Changeset [5822] by
- References #1575: Add support for authenticator plug-in in external …
- 12:47 PM Ticket #1575 (Add support for authenticator plug-in in external JAR files) updated by
-
Owner, Status changed
- 12:47 PM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5821]) References #1592: Unified installation procedure for …
- 12:47 PM Changeset [5821] by
- References #1592: Unified installation procedure for plug-ins, …
- 12:46 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5820]) References #1590: Documentation cleanup Last part of the …
- 12:46 PM Changeset [5820] by
- References #1590: Documentation cleanup Last part of the "Write …
Oct 21, 2011:
- 2:48 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5819]) References #1590: Documentation cleanup The chapter about …
- 2:48 PM Changeset [5819] by
- References #1590: Documentation cleanup The chapter about writing …
- 1:15 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5818]) References #1590: Documentation cleanup Some more …
- 1:15 PM Changeset [5818] by
- References #1590: Documentation cleanup Some more sections in the …
- 8:27 AM Ticket #1638 (Add support for 'between' operator in list pages) closed by
- fixed: (In [5817]) Fixes #1638: Add support for 'between' operator in list pages
- 8:27 AM Changeset [5817] by
- Fixes #1638: Add support for 'between' operator in list pages
Oct 20, 2011:
- 2:36 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5816]) References #1590: Documentation cleanup 3 chapters in the …
- 2:36 PM Changeset [5816] by
- References #1590: Documentation cleanup 3 chapters in the Developer …
- 2:06 PM Ticket #1639 (Add support for unpacking *.gz and *.bz2 files that are not tar-ed ...) created by
- This should now be possible to implement since #978 has been fixed and …
- 1:31 PM Ticket #1575 (Add support for authenticator plug-in in external JAR files) updated by
-
Milestone changed
Moving this to 3.0 since I think #1599 will not happen in the near future. - 11:40 AM Ticket #1638 (Add support for 'between' operator in list pages) created by
- It would be useful to filter on date and numerical columns for values …
Oct 18, 2011:
- 1:48 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5815]) References #1590: Documentation cleanup New screenshots …
- 1:48 PM Changeset [5815] by
- References #1590: Documentation cleanup New screenshots and some …
- 1:47 PM Ticket #1597 (Subtypes of items) updated by
- (In [5814]) References #1597: Subtypes of items Validation rules for …
- 1:46 PM Changeset [5814] by
- References #1597: Subtypes of items Validation rules for "project …
- 11:24 AM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) closed by
- fixed
- 11:24 AM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5813]) References #1613: Extend the 'roles' test case with some …
- 11:24 AM Changeset [5813] by
- References #1613: Extend the 'roles' test case with some …
Oct 17, 2011:
- 4:19 PM Ticket #1629 (Use <label> instead of javascript for text associated with radio buttons) closed by
- fixed: (In [5812]) Fixes #1629: Use <label> instead of javascript for text …
- 4:19 PM Changeset [5812] by
- Fixes #1629: Use <label> instead of javascript for text associated …
- 11:48 AM Ticket #1629 (Use <label> instead of javascript for text associated with radio buttons) updated by
-
Status, Owner changed
- 11:19 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) closed by
- fixed: (In [5811]) Fixes #1628: Use :hover instead of …
- 11:19 AM Changeset [5811] by
- Fixes #1628: Use :hover instead of onMouseEnter/onMouseLeave * …
- 10:45 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) updated by
- (In [5810]) References #1628: Use :hover instead of …
- 10:45 AM Changeset [5810] by
- References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
- 10:38 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) updated by
- (In [5809]) References #1628: Use :hover instead of …
- 10:38 AM Changeset [5809] by
- References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
- 9:15 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) updated by
- (In [5808]) References #1628: Use :hover instead of …
- 9:15 AM Changeset [5808] by
- References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
- 7:26 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) updated by
-
Owner, Status changed
Oct 14, 2011:
- 3:08 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5807]) References #1153: Handling short read transcript sequence …
- 3:08 PM Changeset [5807] by
- References #1153: Handling short read transcript sequence data Lots …
Oct 12, 2011:
- 3:33 PM DeveloperInformation edited by
- (diff)
- 3:11 PM DeveloperInformation edited by
- Releasing BASE 3.0-beta (diff)
- 3:10 PM WikiStart edited by
- Releasing BASE 3.0-beta (diff)
- 3:09 PM DownloadPage edited by
- Releasing BASE 3.0-beta (diff)
- 2:59 PM Changeset [5806] by
- Tagging version 3.0-beta
- 2:56 PM Changeset [5805] by
- Preparing release 3.0-beta.
- 2:45 PM Changeset [5804] by
- Fixes an issue where a job agent may have trouble to determine if an …
- 2:00 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 1:59 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5803]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 1:59 PM Changeset [5803] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Handle project …
- 1:54 PM Ticket #1603 (Developers migration guide) closed by
- fixed: (In [5802]) Fixes #1603: Developers migration guide Can't think of …
- 1:54 PM Changeset [5802] by
- Fixes #1603: Developers migration guide Can't think of any more major …
- 1:47 PM Ticket #1603 (Developers migration guide) updated by
-
Description changed
- 1:26 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5801]) References #1590: Documentation cleanup New and updated …
- 1:26 PM Changeset [5801] by
- References #1590: Documentation cleanup New and updated screenshots …
- 11:21 AM Ticket #1637 (Test BASE with PostgreSQL 9) created by
- 11:19 AM Ticket #1636 (Test BASE with Tomcat 7) created by
- Check if BASE works with Tomcat 7 and if not, see if we can fix any …
- 11:18 AM Ticket #1635 (Test BASE with Java 7) created by
- It has been a couple of months since Java 7 was released. I think we …
- 11:10 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5800]) References #1590: Documentation cleanup New and updated …
- 11:10 AM Changeset [5800] by
- References #1590: Documentation cleanup New and updated screenshots …
- 9:52 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5799]) References #1590: Documentation cleanup * Homepage …
- 9:52 AM Changeset [5799] by
- References #1590: Documentation cleanup * Homepage screenshot was …
Oct 11, 2011:
- 6:32 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5798]) References #1590: Documentation cleanup New and updated …
- 6:32 PM Changeset [5798] by
- References #1590: Documentation cleanup New and updated screenshots …
- 2:55 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5797]) References #1590: Documentation cleanup New and updated …
- 2:55 PM Changeset [5797] by
- References #1590: Documentation cleanup New and updated screenshots …
Oct 10, 2011:
- 1:38 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5796]) References #1590: Documentation cleanup New and updated …
- 1:38 PM Changeset [5796] by
- References #1590: Documentation cleanup New and updated screenshots …
- 12:08 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5795]) References #1590: Documentation cleanup New and updated …
- 12:08 PM Changeset [5795] by
- References #1590: Documentation cleanup New and updated screenshots …
Oct 7, 2011:
- 2:52 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5794]) References #1590: Documentation cleanup New and updated …
- 2:52 PM Changeset [5794] by
- References #1590: Documentation cleanup New and updated screenshots …
- 2:51 PM Ticket #1634 (All external files are created in the root directory) closed by
- fixed: (In [5793]) Fixes #1634: All external files are created in the root …
- 2:51 PM Changeset [5793] by
- Fixes #1634: All external files are created in the root directory …
- 2:29 PM Ticket #1634 (All external files are created in the root directory) created by
- Go to the filemanager in a BASE installation and navigate to a …
- 1:14 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5792]) References #1590: Documentation cleanup New and updated …
- 1:14 PM Changeset [5792] by
- References #1590: Documentation cleanup New and updated screenshots …
- 10:55 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5791]) References #1590: Documentation cleanup * New icons for …
- 10:55 AM Changeset [5791] by
- References #1590: Documentation cleanup * New icons for tip, note, …
Oct 6, 2011:
- 3:50 PM Ticket #1626 (Center-align text on buttons) updated by
- (In [5790]) References #1626: Center-align text on buttons Using …
- 3:50 PM Changeset [5790] by
- References #1626: Center-align text on buttons Using leftaligned …
- 3:49 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5789]) References #1590: Documentation cleanup New screenshots …
- 3:49 PM Changeset [5789] by
- References #1590: Documentation cleanup New screenshots for chapter 4 …
- 1:05 PM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5788]) References #1613: Extend the 'roles' test case with some …
- 1:05 PM Changeset [5788] by
- References #1613: Extend the 'roles' test case with some …
- 1:02 PM Ticket #1624 (Create array design (feature) importer for GTF files) updated by
- (In [5787]) References #1624: Create array design (feature) importer …
- 1:02 PM Changeset [5787] by
- References #1624: Create array design (feature) importer for GTF files …
- 1:00 PM Ticket #1597 (Subtypes of items) updated by
- (In [5786]) References #1597: Subtypes of items Only check for WRITE …
- 1:00 PM Changeset [5786] by
- References #1597: Subtypes of items Only check for WRITE permission …
Oct 5, 2011:
- 2:53 PM Ticket #1597 (Subtypes of items) updated by
- (In [5785]) References #1597: Subtypes of items Parts of the subtype …
- 2:53 PM Changeset [5785] by
- References #1597: Subtypes of items Parts of the subtype …
- 2:52 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5784]) References #1590: Documentation cleanup Import and export …
- 2:52 PM Changeset [5784] by
- References #1590: Documentation cleanup Import and export of data.
- 12:34 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5783]) References #1590: Documentation cleanup Experiments and …
- 12:34 PM Changeset [5783] by
- References #1590: Documentation cleanup Experiments and analysis chapter.
Oct 4, 2011:
- 3:43 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5782]) References #1590: Documentation cleanup Restructured …
- 3:43 PM Changeset [5782] by
- References #1590: Documentation cleanup Restructured documentation to …
- 2:00 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5781]) References #1590: Documentation cleanup Moved "Internals …
- 2:00 PM Changeset [5781] by
- References #1590: Documentation cleanup Moved "Internals of the Core …
- 1:01 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5780]) References #1590: Documentation cleanup Updated developer …
- 1:01 PM Changeset [5780] by
- References #1590: Documentation cleanup Updated developer …
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