Timeline
Oct 4, 2011:
- 3:43 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5782]) References #1590: Documentation cleanup Restructured …
- 3:43 PM Changeset [5782] by
- References #1590: Documentation cleanup Restructured documentation to …
- 2:00 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5781]) References #1590: Documentation cleanup Moved "Internals …
- 2:00 PM Changeset [5781] by
- References #1590: Documentation cleanup Moved "Internals of the Core …
- 1:01 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5780]) References #1590: Documentation cleanup Updated developer …
- 1:01 PM Changeset [5780] by
- References #1590: Documentation cleanup Updated developer …
Sep 30, 2011:
- 2:37 PM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5779]) References #1613: Extend the 'roles' test case with some …
- 2:37 PM Changeset [5779] by
- References #1613: Extend the 'roles' test case with some …
- 2:00 PM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5778]) References #1613: Extend the 'roles' test case with some …
- 2:00 PM Changeset [5778] by
- References #1613: Extend the 'roles' test case with some …
- 1:34 PM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5777]) References #1592: Unified installation procedure for …
- 1:34 PM Changeset [5777] by
- References #1592: Unified installation procedure for plug-ins, …
- 1:28 PM Ticket #1633 (NumberFormatException when parsing NaN values) closed by
- fixed: (In [5776]) Fixes #1633: NumberFormatException when parsing NaN values
- 1:28 PM Changeset [5776] by
- Fixes #1633: NumberFormatException when parsing NaN values
- 12:55 PM Ticket #1633 (NumberFormatException when parsing NaN values) created by
- This was fixed a long time ago by ticket #708 for one case, but not …
- 9:44 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5775]) References #1592: Unified installation procedure for …
- 9:44 AM Changeset [5775] by
- References #1592: Unified installation procedure for plug-ins, …
Sep 29, 2011:
- 3:38 PM Ticket #1625 (GAL exporter is only usable for array design that use COORDINATES for ...) closed by
- fixed: (In [5774]) Fixes #1625: GAL exporter is only usable for array design …
- 3:38 PM Changeset [5774] by
- Fixes #1625: GAL exporter is only usable for array design that use …
- 3:31 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 3:27 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5773]) References #1153: Handling short read transcript sequence …
- 3:14 PM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) updated by
- (In [5773]) References #1152: Handling short read transcript sequence …
- 3:14 PM Changeset [5773] by
- References #1152: Handling short read transcript sequence data * …
- 2:15 PM Ticket #1624 (Create array design (feature) importer for GTF files) updated by
- (In [5772]) References #1624: Create array design (feature) importer …
- 2:15 PM Changeset [5772] by
- References #1624: Create array design (feature) importer for GTF files …
- 1:48 PM Ticket #1624 (Create array design (feature) importer for GTF files) updated by
- (In [5771]) References #1624: Create array design (feature) importer …
- 1:48 PM Changeset [5771] by
- References #1624: Create array design (feature) importer for GTF files …
- 1:27 PM Ticket #1623 (Create reporter importer for GTF files) updated by
- (In [5770]) References #1623: Create reporter importer for GTF files …
- 1:27 PM Changeset [5770] by
- References #1623: Create reporter importer for GTF files The default …
- 10:44 AM Ticket #1632 (NullPointerException when using JEP mapping for column with string values) closed by
- fixed: (In [5769]) Fixes #1632: NullPointerException when using JEP mapping …
- 10:44 AM Changeset [5769] by
- Fixes #1632: NullPointerException when using JEP mapping for column …
- 10:29 AM Ticket #1632 (NullPointerException when using JEP mapping for column with string values) created by
- This can for example be tested by using the reporter importer with a …
Sep 28, 2011:
- 2:52 PM Ticket #1631 (Raw data importer doesn't log missing features) closed by
- fixed: (In [5768]) Fixes #1631: Raw data importer doesn't log missing features
- 2:52 PM Changeset [5768] by
- Fixes #1631: Raw data importer doesn't log missing features
- 2:51 PM Ticket #1631 (Raw data importer doesn't log missing features) created by
- When using the raw data flat file importer with "Feature …
- 12:49 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) created by
- We are thinking of moving our BASE installation from MySQL to …
- 9:31 AM Ticket #1626 (Center-align text on buttons) closed by
- fixed: (In [5767]) Fixes #1626: Center-align text on buttons
- 9:31 AM Changeset [5767] by
- Fixes #1626: Center-align text on buttons
- 9:00 AM Ticket #1629 (Use <label> instead of javascript for text associated with radio buttons) created by
- In many places with radiobuttons there is a text next to each button …
- 8:46 AM Ticket #1627 (The "test with file" function has annoying double scrollbars in "File ...) closed by
- fixed: (In [5766]) Fixes #1627: The "test with file" function has annoying …
- 8:46 AM Changeset [5766] by
- Fixes #1627: The "test with file" function has annoying double …
- 8:13 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) created by
- We use javascript events in several places (eg. taglibs) to catch when …
Sep 27, 2011:
- 3:51 PM Ticket #1627 (The "test with file" function has annoying double scrollbars in "File ...) updated by
-
Description changed
- 3:50 PM Ticket #1627 (The "test with file" function has annoying double scrollbars in "File ...) created by
- It's really hard to use because the outer scrollbar is needed to …
- 3:38 PM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5765]) References #1613: Extend the 'roles' test case with some …
- 3:38 PM Changeset [5765] by
- References #1613: Extend the 'roles' test case with some …
- 2:35 PM Ticket #1624 (Create array design (feature) importer for GTF files) closed by
- fixed: (In [5764]) Fixes #1624: Create array design (feature) importer for …
- 2:35 PM Changeset [5764] by
- Fixes #1624: Create array design (feature) importer for GTF files * …
- 11:59 AM Ticket #1626 (Center-align text on buttons) created by
- I am not sure when, but somewhere in the BASE 3 development the text …
- 10:34 AM Ticket #1625 (GAL exporter is only usable for array design that use COORDINATES for ...) created by
- The plug-in should hide itself for other types of array designs.
- 9:17 AM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5763]) References #1604: Support for multiple files of the same …
- 9:17 AM Changeset [5763] by
- References #1604: Support for multiple files of the same type in a …
Sep 26, 2011:
- 8:06 PM Ticket #1623 (Create reporter importer for GTF files) closed by
- fixed: (In [5759]) Fixes #1623: Create reporter importer for GTF files
- 3:01 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5762]) References #1604: Support for multiple files of the same …
- 3:01 PM Changeset [5762] by
- References #1604: Support for multiple files of the same type in a …
- 2:08 PM Ticket #1623 (Create reporter importer for GTF files) updated by
- (In [5761]) References #1623: Create reporter importer for GTF files …
- 2:08 PM Changeset [5761] by
- References #1623: Create reporter importer for GTF files Column …
- 1:45 PM Ticket #1624 (Create array design (feature) importer for GTF files) updated by
-
Owner, Status changed
- 1:20 PM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5760]) References #1592: Unified installation procedure for …
- 1:20 PM Changeset [5760] by
- References #1592: Unified installation procedure for plug-ins, …
- 12:44 PM Changeset [5759] by
- Fixes #1623: Create reporter importer for GTF files
Sep 23, 2011:
- 9:23 AM Ticket #1623 (Create reporter importer for GTF files) updated by
-
Owner, Status changed
- 9:05 AM Ticket #978 (Unzipped files never inherit file type specified during upload) closed by
- fixed: (In [5758]) Fixes #978: Unzipped files never inherit file type …
- 9:05 AM Changeset [5758] by
- Fixes #978: Unzipped files never inherit file type specified during …
Sep 22, 2011:
- 2:49 PM Ticket #1618 (Improve "Reporter search" performance in experiment explorer) updated by
- (In [5757]) References #1618: Improve "Reporter search" performance in …
- 2:49 PM Changeset [5757] by
- References #1618: Improve "Reporter search" performance in experiment …
- 2:39 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5756]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:39 PM Changeset [5756] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Several …
- 12:38 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5755]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 12:38 PM Changeset [5755] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Handle …
- 12:37 PM Ticket #1615 (Add test program in BASE 2.17 that create data that need special ...) updated by
- (In [5754]) References #1615: Add test program in BASE 2.17 that …
- 12:37 PM Changeset [5754] by
- References #1615: Add test program in BASE 2.17 that create data that …
- 9:44 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5753]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 9:44 AM Changeset [5753] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Update …
- 8:03 AM Ticket #978 (Unzipped files never inherit file type specified during upload) updated by
-
Type, Milestone changed
Sep 21, 2011:
- 3:04 PM Ticket #1624 (Create array design (feature) importer for GTF files) created by
- A description of the GTF file format can be found at: …
- 3:02 PM Ticket #1623 (Create reporter importer for GTF files) created by
- A description of the GTF file format can be found at: …
Sep 20, 2011:
- 3:51 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5752]) References #1153: Handling short read transcript sequence …
- 3:51 PM Changeset [5752] by
- References #1153: Handling short read transcript sequence data Adding …
- 3:39 PM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) updated by
- (In [5751]) References #1613: Extend the 'roles' test case with some …
- 3:39 PM Changeset [5751] by
- References #1613: Extend the 'roles' test case with some …
- 1:26 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5750]) References #1153: Handling short read transcript sequence …
- 1:26 PM Changeset [5750] by
- References #1153: Handling short read transcript sequence data …
Sep 19, 2011:
- 2:31 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5749]) References #1153: Handling short read transcript sequence …
- 2:31 PM Changeset [5749] by
- References #1153: Handling short read transcript sequence data …
- 12:50 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5748]) References #1153: Handling short read transcript sequence …
- 12:50 PM Changeset [5748] by
- References #1153: Handling short read transcript sequence data The …
Sep 15, 2011:
- 2:00 PM Ticket #1622 (Blank page when trying to upload a file if not enough quota) closed by
- fixed: (In [5747]) Fixes #1622: Blank page when trying to upload a file if …
- 2:00 PM Changeset [5747] by
- Fixes #1622: Blank page when trying to upload a file if not enough quota
- 1:42 PM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) closed by
- fixed: (In [5746]) Fixes #1592: Unified installation procedure for plug-ins, …
- 1:42 PM Changeset [5746] by
- Fixes #1592: Unified installation procedure for plug-ins, extensions …
- 11:37 AM DownloadPage edited by
- Adding links to the 3.0-alfa documentation (diff)
- 11:33 AM WikiStart edited by
- Adding links to the 3.0-alfa documentation (diff)
- 11:31 AM DeveloperInformation edited by
- Adding links to the 3.0-alfa documentation (diff)
- 11:17 AM DownloadPage edited by
- Releasing BASE 3.0-alfa (diff)
- 11:08 AM ReleaseProcedure edited by
- Updating release instruction with new JAR file names (diff)
- 11:06 AM Changeset [5745] by
- Tagging version 3.0-alfa (second try)
- 11:05 AM Changeset [5744] by
- Removing tag because some fixes were needed.
- 11:04 AM Ticket #1595 (Change name of BASE jar files) updated by
- (In [5743]) References #1595: Change name of BASE jar files Release …
- 11:04 AM Changeset [5743] by
- References #1595: Change name of BASE jar files Release packages …
- 10:52 AM Changeset [5742] by
- Tagging version 3.0-alfa
- 10:51 AM Changeset [5741] by
- Preparing release 3.0-alfa
- 10:50 AM ReleaseProcedure edited by
- Updating release instruction with new version number handling in build.xml (diff)
- 10:30 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) reopened by
-
I found an issue with the
XJspCompilerwhen testing the example … - 9:51 AM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5740]) References #1153: Handling short read transcript sequence …
- 9:51 AM Changeset [5740] by
- References #1153: Handling short read transcript sequence data The …
- 9:18 AM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5739]) References #1153: Handling short read transcript sequence …
- 9:18 AM Changeset [5739] by
- References #1153: Handling short read transcript sequence data …
- 8:53 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5738]) References #1590: Documentation cleanup Re-orgarnized …
- 8:53 AM Changeset [5738] by
- References #1590: Documentation cleanup Re-orgarnized file/directory …
Sep 14, 2011:
- 2:41 PM Ticket #1601 (Convert logging plug-in system to an extension point) updated by
-
Milestone changed
- 2:41 PM Ticket #1600 (Convert file packing plug-in system to an extension point) updated by
-
Milestone changed
- 2:41 PM Ticket #1599 (Convert authentication plug-in system to an extension point) updated by
-
Milestone changed
- 2:40 PM Ticket #1614 (Add option in edit dialog to add new items as project default items) updated by
-
Milestone changed
- 2:40 PM Ticket #1605 (Inherit annotations from a child path) updated by
-
Milestone changed
- 2:40 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
-
Milestone changed
- 2:36 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5737]) References #1590: Documentation cleanup Updated Admin …
- 2:36 PM Changeset [5737] by
- References #1590: Documentation cleanup Updated Admin documentation: …
- 2:32 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5736]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:32 PM Changeset [5736] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Disable all …
Sep 13, 2011:
- 3:51 PM Ticket #1589 (Delete deprecated classes and methods) updated by
- (In [5735]) References #1589: Delete deprecated classes and methods …
- 3:51 PM Changeset [5735] by
- References #1589: Delete deprecated classes and methods Removed all …
- 11:50 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
The update script seems to be working on our test database and also on … - 11:41 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5734]) References #1591: Upgrade script for BASE 2.17 --> 3.0 * …
- 11:41 AM Changeset [5734] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 * The file …
Sep 12, 2011:
- 2:40 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 2:39 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5733]) References #1591: Upgrade script for BASE 2.17 --> 3.0 * …
- 2:39 PM Changeset [5733] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 * Parent …
- 12:57 PM Ticket #1615 (Add test program in BASE 2.17 that create data that need special ...) updated by
- (In [5732]) References #1615: Add test program in BASE 2.17 that …
- 12:57 PM Changeset [5732] by
- References #1615: Add test program in BASE 2.17 that create data that …
- 12:46 PM Changeset [5731] by
- Remove debug code.
- 12:45 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 12:42 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5730]) References #1591: Upgrade script for BASE 2.17 --> 3.0 * …
- 12:42 PM Changeset [5730] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 * Images to …
Sep 9, 2011:
- 11:53 AM Ticket #1622 (Blank page when trying to upload a file if not enough quota) updated by
- It seems like the problem is originating from the fact the the file …
- 11:42 AM Ticket #1622 (Blank page when trying to upload a file if not enough quota) updated by
-
Description changed
- 11:42 AM Ticket #1621 (Exceeded quota) closed by
- duplicate: Duplicated by #1622.
- 11:41 AM Ticket #1622 (Blank page when trying to upload a file if not enough quota) updated by
-
Description changed
- 11:41 AM Ticket #1619 (Upload file problem) closed by
- duplicate: Replaced with #1622.
- 11:39 AM Ticket #1622 (Blank page when trying to upload a file if not enough quota) created by
- Replaces #1619 and #1621. 1. Create a user account without any …
- 11:20 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 11:03 AM Ticket #1621 (Exceeded quota) created by
- An information should be issued when a user exceeds a quota. Currently …
- 8:55 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
Sep 8, 2011:
- 3:35 PM Ticket #1620 (Implement a 'Manual derived bioassay creator' plug-in) closed by
- fixed: (In [5729]) Fixes #1620: Implement a 'Manual derived bioassay creator' …
- 3:35 PM Changeset [5729] by
- Fixes #1620: Implement a 'Manual derived bioassay creator' plug-in …
- 3:31 PM Ticket #1597 (Subtypes of items) updated by
- (In [5728]) References #1597: Subtypes of items Added unique …
- 3:31 PM Changeset [5728] by
- References #1597: Subtypes of items Added unique constraint on the …
- 2:06 PM Ticket #1620 (Implement a 'Manual derived bioassay creator' plug-in) updated by
-
Status, Owner changed
- 2:05 PM Ticket #1620 (Implement a 'Manual derived bioassay creator' plug-in) created by
- The plug-in should be similar to the 'Manual transform creator' that …
- 2:04 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5727]) References #1153: Handling short read transcript sequence …
- 2:04 PM Changeset [5727] by
- References #1153: Handling short read transcript sequence data …
- 1:08 PM Ticket #1153 (Handling short read transcript sequence data) updated by
-
The last UML diagrams simplify the path between
PhysicalBioAssayand … - 1:02 PM Ticket #1590 (Documentation cleanup) updated by
- (In [5726]) References #1590: Documentation cleanup Images from [5725]
- 1:02 PM Changeset [5726] by
- References #1590: Documentation cleanup Images from [5725]
- 1:00 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) closed by
- fixed: Some minor changes to the UML diagram. The 'allowMultiple' flag was …
- 12:54 PM Ticket #1597 (Subtypes of items) closed by
-
fixed: The last UML diagram adds the
ItemSubtypeFileTypeDatawhich provides … - 11:37 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5725]) References #1590: Documentation cleanup Updated UML …
- 11:37 AM Changeset [5725] by
- References #1590: Documentation cleanup Updated UML diagrams. I hope …
- 9:12 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5724]) References #1590: Documentation cleanup Added section …
- 9:12 AM Changeset [5724] by
- References #1590: Documentation cleanup Added section about bioplate …
Sep 7, 2011:
- 3:34 PM Ticket #1619 (Upload file problem) updated by
- I am not able to reproduce this, so a little more information would be …
- 3:08 PM Ticket #1597 (Subtypes of items) updated by
- (In [5723]) References #1597: Subtypes of items Update the "Create …
- 3:08 PM Changeset [5723] by
- References #1597: Subtypes of items Update the "Create child plate" …
- 2:48 PM Ticket #1619 (Upload file problem) created by
- Trying to upload some files to my project, but when I use the "upload …
- 11:26 AM Ticket #1597 (Subtypes of items) updated by
- (In [5722]) References #1597: Subtypes of items Update the "Move …
- 11:26 AM Changeset [5722] by
- References #1597: Subtypes of items Update the "Move biomaterial" …
Sep 6, 2011:
- 3:39 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5721]) References #1604: Support for multiple files of the same …
- 3:39 PM Changeset [5721] by
- References #1604: Support for multiple files of the same type in a …
- 1:58 PM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5720]) References #1153: Handling short read transcript sequence …
- 1:58 PM Changeset [5720] by
- References #1153: Handling short read transcript sequence data Delete …
- 1:56 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5719]) References #1604: Support for multiple files of the same …
- 1:56 PM Changeset [5719] by
- References #1604: Support for multiple files of the same type in a …
- 12:44 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5718]) References #1604: Support for multiple files of the same …
- 12:44 PM Changeset [5718] by
- References #1604: Support for multiple files of the same type in a …
- 12:03 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5717]) References #1604: Support for multiple files of the same …
- 12:03 PM Changeset [5717] by
- References #1604: Support for multiple files of the same type in a …
- 9:02 AM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5716]) References #1604: Support for multiple files of the same …
- 9:02 AM Changeset [5716] by
- References #1604: Support for multiple files of the same type in a …
- 9:01 AM Ticket #1598 (Use the extensions system for data file validators and metadata readers) closed by
- fixed: Seems to be working well with the Illumina package so I am closing …
Sep 5, 2011:
- 3:38 PM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5715]) References #1592: Unified installation procedure for …
- 3:38 PM Changeset [5715] by
- References #1592: Unified installation procedure for plug-ins, …
- 2:10 PM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by
- (In [5714]) References #1604: Support for multiple files of the same …
- 2:10 PM Changeset [5714] by
- References #1604: Support for multiple files of the same type in a …
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