Timeline



May 25, 2011:

12:56 PM Ticket #1153 (Handling short read transcript sequence data) updated by Nicklas Nordborg
(In [5641]) References #1153: Handling short read transcript sequence …
12:56 PM Changeset [5641] by Nicklas Nordborg
References #1153: Handling short read transcript sequence data …

May 24, 2011:

12:09 PM Ticket #1590 (Documentation cleanup) updated by Nicklas Nordborg
(In [5640]) References #1590: Documentation cleanup Checked and …
12:09 PM Changeset [5640] by Nicklas Nordborg
References #1590: Documentation cleanup Checked and changed the …

May 23, 2011:

3:50 PM Ticket #1610 (Base1PluginExecutor tries to remap raw data associations for file-only ...) closed by Nicklas Nordborg
fixed: (In [5639]) Fixes #1610: Base1PluginExecutor tries to remap raw data …
3:50 PM Changeset [5639] by Nicklas Nordborg
Fixes #1610: Base1PluginExecutor tries to remap raw data associations …
3:06 PM Ticket #1609 (Menu item Help -> Help ... links to obsolete web location) closed by Nicklas Nordborg
fixed: (In [5638]) Fixes #1609: Menu item Help -> Help ... links to obsolete …
3:06 PM Changeset [5638] by Nicklas Nordborg
Fixes #1609: Menu item Help -> Help ... links to obsolete web location …
3:03 PM edit-annotationtype.jpg attached to Ticket #1611 by Nicklas Nordborg
3:02 PM Ticket #1611 (Checkbox enabled lists for enumerated annotations) created by Nicklas Nordborg
Enumerated annotations uses a kind of auto-completion input field. …

May 20, 2011:

10:59 AM Ticket #1610 (Base1PluginExecutor tries to remap raw data associations for file-only ...) created by Nicklas Nordborg
This was discovered when running Merge BioAssay on data originating …
9:49 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by Nicklas Nordborg
(In [5637]) References #1592: Unified installation procedure for …
9:49 AM Changeset [5637] by Nicklas Nordborg
References #1592: Unified installation procedure for plug-ins, …

May 19, 2011:

12:57 PM Ticket #1609 (Menu item Help -> Help ... links to obsolete web location) updated by Nicklas Nordborg
I have created a symbolic link on the server so the above url should …
12:55 PM Ticket #1608 (batch importer fails on item already exists but it should not) closed by Nicklas Nordborg
fixed: (In [5636]) Fixes #1608: batch importer fails on item already exists …
12:55 PM Changeset [5636] by Nicklas Nordborg
Fixes #1608: batch importer fails on item already exists but it should not
12:06 PM Ticket #1608 (batch importer fails on item already exists but it should not) updated by Nicklas Nordborg
I can verify this bug. The relevant part of the code is …
10:33 AM Ticket #1609 (Menu item Help -> Help ... links to obsolete web location) created by Jari Häkkinen
Currently it goes to …
10:31 AM Ticket #1608 (batch importer fails on item already exists but it should not) updated by Jari Häkkinen
Description changed
10:30 AM Ticket #1608 (batch importer fails on item already exists but it should not) created by Jari Häkkinen
The scenario: I have many extracts in different projects. I create a …

May 18, 2011:

9:26 PM Ticket #1607 (Help text generation creates invalid xml) closed by Nicklas Nordborg
fixed: (In [5635]) Fixes #1607: Help text generation creates invalid xml The …
9:26 PM Changeset [5635] by Nicklas Nordborg
Fixes #1607: Help text generation creates invalid xml The fix …
4:32 PM Ticket #1607 (Help text generation creates invalid xml) created by Nicklas Nordborg
I just discovered this when building the documentation on a windows …
2:47 PM Ticket #1603 (Developers migration guide) updated by Nicklas Nordborg
(In [5634]) References #1603: Developers migration guide Started on …
2:47 PM Changeset [5634] by Nicklas Nordborg
References #1603: Developers migration guide Started on this chapter.
2:46 PM Ticket #1590 (Documentation cleanup) updated by Nicklas Nordborg
(In [5633]) References #1590: Documentation cleanup Checked and …
2:46 PM Changeset [5633] by Nicklas Nordborg
References #1590: Documentation cleanup Checked and changed the …
2:04 PM Ticket #1606 (Store BASE 2.17 documentation on the trac server) created by Nicklas Nordborg
This is partly related to #1590 (Documentation cleanup). In order to …
10:56 AM Ticket #1603 (Developers migration guide) updated by Nicklas Nordborg
Status, Owner changed
8:35 AM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Priority changed
Upgrading this to "critical" since a lot of the new functionality …

May 17, 2011:

11:35 AM Ticket #1153 (Handling short read transcript sequence data) updated by Nicklas Nordborg
(In [5632]) References #1153: Handling short read transcript sequence …
11:35 AM Changeset [5632] by Nicklas Nordborg
References #1153: Handling short read transcript sequence data …

May 16, 2011:

2:56 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
(In [5631]) References #1597: Subtypes of items Added support for …
2:56 PM Changeset [5631] by Nicklas Nordborg
References #1597: Subtypes of items Added support for subtypes with …
2:50 PM item-subtypes-3.png attached to Ticket #1597 by Nicklas Nordborg

May 13, 2011:

2:56 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Note! The implementation so far is like the …
2:54 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
(In [5630]) References #1597: Subtypes of items Added Subtypable
2:54 PM Changeset [5630] by Nicklas Nordborg
References #1597: Subtypes of items Added Subtypable interface and …

May 12, 2011:

3:48 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Hmmm... I have been working a bit with the implementation of this and …

May 11, 2011:

4:27 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Description changed
4:26 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Added links to ProtocolType, HardwareType and SoftwareType. This …
4:17 PM item-subtypes-2.png attached to Ticket #1597 by Nicklas Nordborg
4:17 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Summary changed
4:06 PM sequencing-update-script-draft-2.txt attached to Ticket #1153 by Nicklas Nordborg
1:04 PM sequencing-draft-2.txt attached to Ticket #1153 by Nicklas Nordborg
1:03 PM sequencing-rawdata-draft-2.png attached to Ticket #1153 by Nicklas Nordborg
Second draft: UML diagram for raw data
1:03 PM sequencing-biomaterials-draft-2.png attached to Ticket #1153 by Nicklas Nordborg
Second draft: UML diagram for biomaterials
9:25 AM Ticket #1605 (Inherit annotations from a child path) created by Nicklas Nordborg
This may seem contradicting, but the use case is some like follows: …
8:59 AM Ticket #1604 (Support for multiple files of the same type in a FileSet) updated by Nicklas Nordborg
The updated database schema is not very different from before. There …
8:53 AM datalayer.platforms.png attached to Ticket #1604 by Nicklas Nordborg
8:50 AM Ticket #1604 (Support for multiple files of the same type in a FileSet) created by Nicklas Nordborg
This is a sub-ticket to #1153. We expect that the model we need …
8:43 AM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
The idea is to introduce a new interface in the data layer: …
8:31 AM item-subtypes.png attached to Ticket #1597 by Nicklas Nordborg
8:31 AM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Status, Owner changed

May 9, 2011:

12:36 PM Ticket #1597 (Subtypes of items) updated by Nicklas Nordborg
Maybe we should extend this to more than biomaterial... I am thinking …
9:12 AM Changeset [5629] by Nicklas Nordborg
Merged patch release 2.17.1 to the trunk.
9:00 AM Milestone BASE 2.17.1 completed
Bug fixes for 2.17. Revision Log: log:branches/2.17-stable@5579:5627
9:00 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.17.1 (diff)
8:56 AM Changeset [5628] by Nicklas Nordborg
Changes for future release 2.17.2
8:46 AM Changeset [5627] by Nicklas Nordborg
Tagging version 2.17.1
8:45 AM Ticket #1585 (Problem with 'null' parameter values in plug-in configuration when ...) updated by Nicklas Nordborg
(In [5626]) References #1585: Problem with 'null' parameter values in …
8:45 AM Changeset [5626] by Nicklas Nordborg
References #1585: Problem with 'null' parameter values in plug-in …
8:30 AM Changeset [5625] by Nicklas Nordborg
Preparing release 2.17.1

May 6, 2011:

2:33 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by Nicklas Nordborg
Description changed
2:33 PM Tickets #1591,​1598 batch updated by Nicklas Nordborg
(In [5624]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
2:33 PM Changeset [5624] by Nicklas Nordborg
References #1591: Upgrade script for BASE 2.17 --> 3.0 References …
2:24 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by Nicklas Nordborg
Description changed
2:09 PM Ticket #1598 (Use the extensions system for data file validators and metadata readers) updated by Nicklas Nordborg
(In [5623]) References #1598: Use the extensions system for data file …
2:09 PM Changeset [5623] by Nicklas Nordborg
References #1598: Use the extensions system for data file validators …

May 4, 2011:

7:46 AM Ticket #1598 (Use the extensions system for data file validators and metadata readers) updated by Nicklas Nordborg
Status, Owner changed

May 3, 2011:

2:50 PM Ticket #1594 (JarClassLoader support for JARs within JARs) closed by Nicklas Nordborg
fixed: (In [5622]) Fixes #1594: JarClassLoader support for JARs within JARs
2:50 PM Changeset [5622] by Nicklas Nordborg
Fixes #1594: JarClassLoader support for JARs within JARs
1:44 PM Ticket #1594 (JarClassLoader support for JARs within JARs) updated by Nicklas Nordborg
Status, Owner changed
My idea is that the JARs inside should be copied to the userfiles …
1:23 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by Nicklas Nordborg
Description changed
1:21 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by Nicklas Nordborg
(In [5621]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
1:21 PM Changeset [5621] by Nicklas Nordborg
References #1591: Upgrade script for BASE 2.17 --> 3.0 Removed unused …
9:00 AM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by Nicklas Nordborg
Owner, Status changed

May 2, 2011:

12:56 PM Ticket #1593 (Extension system for the core API) updated by Nicklas Nordborg
(In [5620]) References #1593: Extension system for the core API …
12:56 PM Changeset [5620] by Nicklas Nordborg
References #1593: Extension system for the core API Removed unused …

Apr 29, 2011:

3:41 PM Ticket #1153 (Handling short read transcript sequence data) updated by Nicklas Nordborg
(In [5619]) References #1153: Handling short read transcript sequence …
3:41 PM Changeset [5619] by Nicklas Nordborg
References #1153: Handling short read transcript sequence data The …
2:19 PM sequencing-draft-1.txt attached to Ticket #1153 by Nicklas Nordborg
More details and thoughts about the diagram
2:17 PM sequencing-uml-draft-1.png attached to Ticket #1153 by Nicklas Nordborg
First draft of an UML-like diagram

Apr 28, 2011:

12:59 PM Ticket #1596 (Force host and port on file server level for external files) closed by Nicklas Nordborg
fixed: (In [5618]) Fixes #1596: Force host and port on file server level for …
12:59 PM Changeset [5618] by Nicklas Nordborg
Fixes #1596: Force host and port on file server level for external files
11:10 AM Ticket #1596 (Force host and port on file server level for external files) updated by Nicklas Nordborg
Status, Owner changed
9:40 AM Ticket #1582 (Extended support for external files) closed by Nicklas Nordborg
fixed
8:11 AM Ticket #1593 (Extension system for the core API) closed by Nicklas Nordborg
fixed
8:11 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) closed by Nicklas Nordborg
fixed: All functions from the old extension system should now be working. …
8:09 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by Nicklas Nordborg
(In [5617]) References #1592: Unified installation procedure for …
8:09 AM Changeset [5617] by Nicklas Nordborg
References #1592: Unified installation procedure for plug-ins, …

Apr 27, 2011:

11:27 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by Nicklas Nordborg
(In [5616]) References #1592: Unified installation procedure for …
11:27 AM Changeset [5616] by Nicklas Nordborg
References #1592: Unified installation procedure for plug-ins, …
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