Timeline
Jun 12, 2009:
- 2:17 PM Ticket #1333 (Alternate triggering of servlets in extensions) updated by
-
Description, Owner, Status changed
- 2:16 PM Ticket #1333 (Alternate triggering of servlets in extensions) created by
- Currently, '*.servlet' is used as a triggering pattern for servlets in …
Jun 11, 2009:
- 3:32 PM Changeset [4968] by
- Fixes #1332: TableWriter.tablePrintData() doesn't handle null values …
- 3:32 PM Ticket #1332 (TableWriter.tablePrintData() doesn't handle null values correctly) closed by
- fixed: (In [4968]) Fixes #1332: TableWriter.tablePrintData() doesn't handle …
- 2:18 PM Ticket #1332 (TableWriter.tablePrintData() doesn't handle null values correctly) updated by
-
Status, Owner changed
- 2:18 PM Ticket #1332 (TableWriter.tablePrintData() doesn't handle null values correctly) created by
- The problematic line is: […] which either prints the value of 'd' …
Jun 10, 2009:
- 8:53 AM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) updated by
- (In [4967]) References #1330: Add support function in JavaScript for …
- 8:53 AM Changeset [4967] by
- References #1330: Add support function in JavaScript for parsing AJAX …
Jun 9, 2009:
- 10:44 AM Changeset [4966] by
- References #1330: Add support function in JavaScript for parsing AJAX …
- 10:44 AM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) updated by
- (In [4966]) References #1330: Add support function in JavaScript for …
- 10:43 AM Ticket #1331 (BaseFileWriter doesn't escape newline and carrige return as expected) closed by
- fixed: (In [4965]) Fixes #1331: BaseFileWriter doesn't escape newline and …
- 10:43 AM Changeset [4965] by
- Fixes #1331: BaseFileWriter doesn't escape newline and carrige return …
- 10:41 AM Ticket #1331 (BaseFileWriter doesn't escape newline and carrige return as expected) updated by
-
Status, Owner changed
- 10:41 AM Ticket #1331 (BaseFileWriter doesn't escape newline and carrige return as expected) created by
- The documentation promises to replace newline and carrige return with …
- 9:20 AM Changeset [4964] by
- References #1330: Add support function in JavaScript for parsing AJAX …
- 9:20 AM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) updated by
- (In [4964]) References #1330: Add support function in JavaScript for …
Jun 8, 2009:
- 12:09 PM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) updated by
-
Status, Owner changed
- 12:09 PM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) created by
- The GenePattern integration is going to use a lot of Ajax calls to get …
- 11:56 AM Changeset [4963] by
- References #1329: A plug-in should be able to use a JSP page from an …
- 11:56 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) updated by
- (In [4963]) References #1329: A plug-in should be able to use a JSP …
- 11:45 AM Changeset [4962] by
- Fixes #1329: A plug-in should be able to use a JSP page from an …
- 11:45 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) closed by
- fixed: (In [4962]) Fixes #1329: A plug-in should be able to use a JSP page …
- 8:36 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) updated by
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Status, Owner changed
- 8:30 AM GenePattern created by
- 8:27 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) created by
- A plug-in may currently use a custom JSP page for parameter input. The …
- 8:18 AM Ticket #1328 (Remove all or most 'continue' statements from the code) updated by
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Owner, Status changed
Jun 5, 2009:
- 1:02 PM Changeset [4961] by
- Fixes #1327: BaseFileExporter creates two parameter sections if the …
- 1:02 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) closed by
- fixed: (In [4961]) Fixes #1327: BaseFileExporter creates two parameter …
- 12:59 PM Ticket #1328 (Remove all or most 'continue' statements from the code) created by
- The 'continue' statement is dangerous. It is very easy to miss that …
- 12:52 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) updated by
- I have found the problem. It is the 'continue' statement on …
- 12:16 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) updated by
-
Description, Summary, Status, Owner changed
Ooops... it turns out that duplicate sections are generated in all … - 12:05 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) created by
- For example: If a BASE1 plug-in defines the first parameter as: …
- 10:57 AM Changeset [4960] by
- Fixes #1326: Base1PluginExecuter doesn't recognise 'intensityX' spot …
- 10:57 AM Ticket #1326 (Base1PluginExecuter doesn't recognise 'intensityX' spot field if ...) closed by
- fixed: (In [4960]) Fixes #1326: Base1PluginExecuter doesn't recognise …
- 10:56 AM Ticket #1326 (Base1PluginExecuter doesn't recognise 'intensityX' spot field if ...) updated by
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Description changed
- 10:55 AM Ticket #1326 (Base1PluginExecuter doesn't recognise 'intensityX' spot field if ...) created by
- BASE 1 plug-ins should be allowed to specify 'intensity1', …
Jun 4, 2009:
- 1:00 PM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) created by
- Starting to work with biomaterials and biomaterial lists makes us …
- 12:56 PM Changeset [4959] by
- Fixes #1323: ExtensionsControl.init() doesn't remember the …
- 12:56 PM Ticket #1323 (ExtensionsControl.init() doesn't remember the ServletContext parameter) closed by
- fixed: (In [4959]) Fixes #1323: ExtensionsControl.init() doesn't remember the …
- 12:47 PM Ticket #1324 (Check TODO markers in the BASE code) created by
- There are many places in the BASE code that has been marked with …
- 11:49 AM Ticket #1323 (ExtensionsControl.init() doesn't remember the ServletContext parameter) created by
-
This may lead to
NullPointerExceptionin any servlet that calls … - 8:58 AM Ticket #1322 (StaticCache.cleanUp() should remove empty directories) created by
- The static cache is leaving empty directories behind when old cache …
- 8:56 AM Ticket #1321 (Add exists() and size() to StaticCache) created by
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The
exists()method should return a boolean indicating if a cache … - 8:54 AM Ticket #1320 (Complete the implementation of SessionControl.reloadSettings()) created by
- This method has an option to save current user-specific settings …
Jun 1, 2009:
- 8:35 AM Changeset [4958] by
- Fixes #1319: JEP intensity transformer dialogue complains if …
- 8:35 AM Ticket #1319 (JEP intensity transformer dialogue complains if 'Resulting transform' ...) closed by
- fixed: (In [4958]) Fixes #1319: JEP intensity transformer dialogue complains …
- 8:02 AM Ticket #1319 (JEP intensity transformer dialogue complains if 'Resulting transform' ...) updated by
-
Owner, Status changed
Note that in the example in the image the correct setting is 'NONE' …
May 29, 2009:
- 4:34 PM Ticket #1319 (JEP intensity transformer dialogue complains if 'Resulting transform' ...) created by
- I try to run the plug-in without any changes to the defaults but it …
- 2:41 PM Ticket #1318 (Extension servlets can't use 'forward' to continue processing a ...) closed by
- fixed: (In [4957]) Fixes #1318: Extension servlets can't use 'forward' to …
- 2:41 PM Changeset [4957] by
- Fixes #1318: Extension servlets can't use 'forward' to continue …
- 2:37 PM Ticket #1318 (Extension servlets can't use 'forward' to continue processing a ...) updated by
-
Status, Owner changed
- 2:37 PM Ticket #1318 (Extension servlets can't use 'forward' to continue processing a ...) created by
- The regular procedure for a servlet to forward the processing to …
May 27, 2009:
- 2:59 PM Milestone BASE 2.12 completed
- 2:58 PM Milestone BASE 2.11.1 completed
- Bug fixes for 2.11. Revision Log: log:branches/2.11-stable@4862:4949
- 2:57 PM DownloadPage edited by
- Releasing BASE 2.12 (diff)
- 2:51 PM Changeset [4956] by
- Changes for future release 2.12.1
- 2:41 PM Changeset [4955] by
- Tagging version 2.12
- 2:40 PM Changeset [4954] by
- Preparing release 2.12
- 12:10 PM Changeset [4953] by
- Changes for future release 2.13
- 12:09 PM Changeset [4952] by
- Forking new minor version 2.12 branch
- 12:07 PM Changeset [4951] by
- Merged patch release 2.11.1 to the trunk.
- 11:58 AM DownloadPage edited by
- Releasing BASE 2.11.1 (diff)
- 11:53 AM Changeset [4950] by
- Changes for future release 2.11.2
- 11:37 AM Changeset [4949] by
- Tagging version 2.11.1
- 11:36 AM Changeset [4948] by
- Preparing release 2.11.1
- 8:17 AM Changeset [4947] by
- Want to check if specifying charset=utf-8 makes the names display correctly
May 26, 2009:
- 8:20 PM WikiStart edited by
- Added link to credits.txt (diff)
- 8:14 PM Changeset [4946] by
- Changed credits.txt layout and prepared it for wiki presentation.
- 1:28 PM Changeset [4945] by
- Fixes #1313
- 1:28 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) closed by
- fixed: (In [4945]) Fixes #1313
- 11:02 AM Ticket #1301 (BASE and GenePattern) closed by
- duplicate: Moved to BASE plug-ins site: …
- 9:37 AM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) reopened by
- Install all option is not visible if the jar-file of a plug-in …
May 25, 2009:
- 10:59 AM Ticket #1317 (Table export of items with åäö in name generates strange characters in file) closed by
- invalid
- 10:55 AM Changeset [4944] by
- Fixes #1185: Manual transform creator
- 10:55 AM Ticket #1185 (Manual transform creator) closed by
- fixed: (In [4944]) Fixes #1185: Manual transform creator
May 20, 2009:
- 6:56 PM Ticket #1317 (Table export of items with åäö in name generates strange characters in file) updated by
- The table exporter generates UTF-8 encoded files so this is not a …
- 3:54 PM Ticket #1317 (Table export of items with åäö in name generates strange characters in file) created by
- I have added a screenshot and the exported file. These should explain …
- 1:30 PM Changeset [4943] by
- References #1185: Manual transform creator It is possible to …
- 1:30 PM Ticket #1185 (Manual transform creator) updated by
- (In [4943]) References #1185: Manual transform creator It is possible …
- 12:50 PM Changeset [4942] by
- Fixes #1316: Bioassay set view page should display 'Items related to …
- 12:50 PM Ticket #1316 (Bioassay set view page should display 'Items related to this bioassay set') closed by
- fixed: (In [4942]) Fixes #1316: Bioassay set view page should display 'Items …
- 11:57 AM Ticket #1316 (Bioassay set view page should display 'Items related to this bioassay set') updated by
-
Owner, Status changed
- 11:57 AM Ticket #1316 (Bioassay set view page should display 'Items related to this bioassay set') created by
- It is similar to the 'Items related to this transformation' that is …
- 11:54 AM Changeset [4941] by
- Fixes #1315: A plug-in which uses 'execute immediately' can't get the …
- 11:54 AM Ticket #1315 (A plug-in which uses 'execute immediately' can't get the current job ...) closed by
- fixed: (In [4941]) Fixes #1315: A plug-in which uses 'execute immediately' …
- 11:48 AM Ticket #1315 (A plug-in which uses 'execute immediately' can't get the current job ...) updated by
-
Status, Owner changed
- 11:47 AM Ticket #1315 (A plug-in which uses 'execute immediately' can't get the current job ...) created by
- By looking at the code it seems like the job-id is set when the …
- 8:42 AM Changeset [4940] by
- References #1290: Change source files to UTF-8 Fixed non UTF-8 character.
- 8:42 AM Ticket #1290 (Change source files to UTF-8) updated by
- (In [4940]) References #1290: Change source files to UTF-8 Fixed non …
- 7:45 AM Changeset [4939] by
- References #1310: Annotations for protocols Show/validate protocol …
- 7:45 AM Ticket #1310 (Annotations for protocols) updated by
- (In [4939]) References #1310: Annotations for protocols Show/validate …
May 19, 2009:
- 3:00 PM Ticket #1301 (BASE and GenePattern) updated by
- We had a quick look at this today... and it doesn't seem to be all …
- 1:28 PM Ticket #108 (Logging the change history of an item) updated by
- There is a discussion about some problems related to this in ticket …
- 12:43 PM Ticket #1185 (Manual transform creator) updated by
- > Hmmm.... maybe we can use annotation types for this? It is already …
- 12:27 PM Ticket #1185 (Manual transform creator) updated by
-
Status, Owner changed
- 11:24 AM Changeset [4938] by
- Fixes #1310: Annotations for protocols The code worked perfectly …
- 11:24 AM Ticket #1310 (Annotations for protocols) closed by
- fixed: (In [4938]) Fixes #1310: Annotations for protocols The code worked …
- 10:58 AM Ticket #742 (Refactor BioAssaySetExporter) closed by
- fixed: This seems to work fine now. Both MeV exporters are in place and working.
- 10:51 AM Ticket #1310 (Annotations for protocols) updated by
-
Milestone changed
- 9:49 AM Changeset [4937] by
- References #1271: Add extension points to all toolbars Buttons use …
- 9:49 AM Ticket #1271 (Add extension points to all toolbars) updated by
- (In [4937]) References #1271: Add extension points to all toolbars …
May 18, 2009:
- 4:57 PM Ticket #1310 (Annotations for protocols) updated by
- I have uploaded a patch. It contains two small changes in java code …
- 1:16 PM Changeset [4936] by
- Fixes #1313 Autoinstaller wizzard should detect and display changed …
- 1:16 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) closed by
- fixed: (In [4936]) Fixes #1313 Autoinstaller wizzard should detect and …
- 9:03 AM Changeset [4935] by
- References #1120: The dynamic part of BASE should keep track whether …
- 9:03 AM Ticket #1120 (The dynamic part of BASE should keep track whether intensity data is ...) updated by
- (In [4935]) References #1120: The dynamic part of BASE should keep …
May 15, 2009:
- 3:46 PM Changeset [4934] by
- References #1313 The wizzard no compares the version number between …
- 3:46 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) updated by
- (In [4934]) References #1313 The wizzard no compares the version …
- 1:44 PM Changeset [4933] by
- Fixes #1314: Keep the menubar fixed at top of the screen
- 1:44 PM Ticket #1314 (Keep the menubar fixed at top of the screen) closed by
- fixed: (In [4933]) Fixes #1314: Keep the menubar fixed at top of the screen
- 1:37 PM Ticket #1314 (Keep the menubar fixed at top of the screen) updated by
-
Status, Owner changed
- 1:37 PM Ticket #1314 (Keep the menubar fixed at top of the screen) created by
- An annoying thing on long pages is that as soon as you scroll …
- 1:08 PM Ticket #1185 (Manual transform creator) updated by
-
Description changed
I am thinking about implementing this as a plug-in as well. The … - 11:52 AM Ticket #742 (Refactor BioAssaySetExporter) updated by
- (In [4932]) References #742: Refactor BioAssaySetExporter Removed …
- 11:52 AM Changeset [4932] by
- References #742: Refactor BioAssaySetExporter Removed references in …
May 14, 2009:
- 2:11 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) updated by
-
Status, Owner changed
- 1:49 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) created by
- The plug-in change detection in the autoinstaller should be improved. …
- 1:16 PM Changeset [4931] by
- References #742: Refactor BioAssaySetExporter This fixes the web …
- 1:16 PM Ticket #742 (Refactor BioAssaySetExporter) updated by
- (In [4931]) References #742: Refactor BioAssaySetExporter This fixes …
- 11:41 AM Changeset [4930] by
- References #742: Refactor BioAssaySetExporter Base1PluginExecuter now …
- 11:41 AM Ticket #742 (Refactor BioAssaySetExporter) updated by
- (In [4930]) References #742: Refactor BioAssaySetExporter …
- 10:02 AM Ticket #1312 (Invalid password - pop up does not support none-ASCII characters in login) closed by
- invalid: Local firefox-problem. Tested successfully with other browsers.
May 13, 2009:
- 2:59 PM Ticket #1312 (Invalid password - pop up does not support none-ASCII characters in login) updated by
-
Status, Owner changed
- 2:54 PM Ticket #1311 (Login fails if password contains non-ASCII characters.) closed by
- fixed: (In [4929]) Fixes #1311 Login fails if password contains non-ASCII …
- 2:54 PM Changeset [4929] by
- Fixes #1311 Login fails if password contains non-ASCII characters.
- 1:01 PM Changeset [4928] by
- References #742: Refactor BioAssaySetExporter The new BASEfile …
- 1:01 PM Ticket #742 (Refactor BioAssaySetExporter) updated by
- (In [4928]) References #742: Refactor BioAssaySetExporter The new …
- 11:22 AM Ticket #1307 (File view fails if a file name contains non-ascii characters) closed by
- fixed: (In [4927]) Fixes #1307 File view fails if a file name contains …
- 11:22 AM Changeset [4927] by
- Fixes #1307 File view fails if a file name contains non-ascii characters
- 11:21 AM Ticket #1312 (Invalid password - pop up does not support none-ASCII characters in login) created by
- Make sure an user with login containing none-ASCII characters exists …
- 10:04 AM Ticket #1311 (Login fails if password contains non-ASCII characters.) updated by
-
Description changed
- 10:03 AM Ticket #1311 (Login fails if password contains non-ASCII characters.) created by
- Only if Encrypt password is checked.
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