Timeline



Dec 21, 2008:

8:00 PM Ticket #1224 (Running two "New root bioassay set" jobs at the same time makes the ...) created by Jari Häkkinen
This is at least true or affymetrix. I wanted to create two new root …

Dec 19, 2008:

2:55 PM Ticket #1190 (API and interface for creating biomaterial lists) updated by Nicklas Nordborg
(In [4712]) References #1190: API and interface for creating …
2:55 PM Changeset [4712] by Nicklas Nordborg
References #1190: API and interface for creating biomaterial lists …
12:44 PM Ticket #1223 (News visible only for a selected group of users/groups/project) updated by Jari Häkkinen
Replying to nicklas: > Not backwards compatible, and I …
11:55 AM Ticket #1223 (News visible only for a selected group of users/groups/project) updated by Nicklas Nordborg
Milestone changed
Not backwards compatible, and I don't think it is a good idea. Isn't …
11:48 AM Ticket #1223 (News visible only for a selected group of users/groups/project) created by Jari Häkkinen
It would be nice to be able to create news items only visible for …

Dec 18, 2008:

7:39 PM Ticket #1221 (Error creating a direcotory) closed by Nicklas Nordborg
invalid: The error happens because the directory already exists.
7:25 PM Ticket #1222 (Document the nice batch import of raw data through experiment import button) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/test/roles/index.html#user
4:54 PM Ticket #1221 (Error creating a direcotory) created by base
I get the below stacktrace when I create a directory. However, the …
9:22 AM Changeset [4711] by Nicklas Nordborg
Merged patch release 2.9.1 to the trunk.
9:05 AM Milestone BASE 2.9.1 completed
Bug fixes for 2.9. Revision Log: log:branches/2.9-stable@4667:4709
9:05 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.9.1 (diff)
9:01 AM Changeset [4710] by Nicklas Nordborg
Changes for future release 2.9.2
8:43 AM Changeset [4709] by Nicklas Nordborg
Tagging version 2.9.1
8:42 AM Changeset [4708] by Nicklas Nordborg
Preparing release 2.9.1

Dec 17, 2008:

10:33 PM Ticket #1220 (NullPointerException in Experiment overview if an extract is missing a ...) closed by Nicklas Nordborg
fixed: (In [4707]) Fixes #1220: NullPointerException in Experiment overview …
10:33 PM Changeset [4707] by Nicklas Nordborg
Fixes #1220: NullPointerException in Experiment overview if an extract …
10:28 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) closed by Nicklas Nordborg
duplicate: Replaced by #1220.
10:27 PM Ticket #1220 (NullPointerException in Experiment overview if an extract is missing a ...) created by Nicklas Nordborg
The original error was reported in #1217. Below is the relevant stack …
8:36 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Milestone changed
8:35 PM Changeset [4706] by Nicklas Nordborg
Fixes #1219: Deleting the active project results in …
8:35 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) closed by Nicklas Nordborg
fixed: (In [4706]) Fixes #1219: Deleting the active project results in …
8:15 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) reopened by Nicklas Nordborg
I think the active project info should be reset if the project is deleted.
8:03 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) closed by Jari Häkkinen
invalid: You are right. I have now successfully removed the share icon from the …
7:48 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Priority changed
> Basically a project should not be deletable as long as items are …
7:46 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Summary changed
I don't think this has anything to do with sharing at all. It seems to …
5:28 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Jari Häkkinen
Summary changed
5:27 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Jari Häkkinen
I tried to delete the files but this is not allowed and gives this …
5:24 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) created by Jari Häkkinen
I get the below stacktrace. I cannot share the items at all now. Also, …
1:20 PM Ticket #1216 (Annotation importer selects "wrong" configuration) updated by Nicklas Nordborg
Works for me. Can you please attach the file with the annotations (or …
1:10 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) updated by Nicklas Nordborg
Description changed
What is "Project Summary"? Can you tell me were to find that in BASE?
1:08 PM Ticket #1218 (Unexpected error viewing Project Summary in shared project) closed by Nicklas Nordborg
duplicate: Duplicate of #1217.
1:01 PM Ticket #1218 (Unexpected error viewing Project Summary in shared project) created by base
Hi, I have created a number of projects called 'development', …
1:01 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) created by base
Hi, I have created a number of projects called 'development', …
1:01 AM Ticket #1216 (Annotation importer selects "wrong" configuration) created by Jari Häkkinen
I have two configurations for the annotation importer. One matches my …

Dec 16, 2008:

10:42 PM Ticket #1215 (Batch importer does not update parent in some cases) updated by Nicklas Nordborg
Type changed
I would not consider this a defect. The specifications says that: In …
9:17 PM Ticket #1215 (Batch importer does not update parent in some cases) created by Jari Häkkinen
This may not be a bug. If it is not, then consider it as an …
2:33 PM Ticket #1190 (API and interface for creating biomaterial lists) updated by Nicklas Nordborg
Status, Owner changed
2:29 PM Ticket #1191 (Biomaterial lists manager API and interface) closed by Nicklas Nordborg
fixed: (In [4705]) Fixes #1191: Biomaterial lists manager API and interface
2:29 PM Changeset [4705] by Nicklas Nordborg
Fixes #1191: Biomaterial lists manager API and interface
9:39 AM Ticket #1191 (Biomaterial lists manager API and interface) updated by Nicklas Nordborg
Owner, Status changed

Dec 11, 2008:

4:27 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4704]) References #979 First commit of bioplates-support in the …
4:27 PM Changeset [4704] by Martin Svensson
References #979 First commit of bioplates-support in the webbinterface.
2:27 PM Ticket #1214 (PathInfo support in extension servlets) closed by Nicklas Nordborg
fixed: (In [4703]) Fixes #1214: PathInfo support in extension servlets
2:27 PM Changeset [4703] by Nicklas Nordborg
Fixes #1214: PathInfo support in extension servlets
2:23 PM Changeset [4702] by Nicklas Nordborg
References #1166: Store creation date for items Fixed invalid xml in …
2:23 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
(In [4702]) References #1166: Store creation date for items Fixed …
1:19 PM Ticket #1214 (PathInfo support in extension servlets) updated by Nicklas Nordborg
Description changed
1:16 PM Ticket #1214 (PathInfo support in extension servlets) updated by Nicklas Nordborg
Status, Owner changed
1:14 PM Ticket #1214 (PathInfo support in extension servlets) created by Nicklas Nordborg
Extensions that which to use servlets are currently required to follow …
11:31 AM Changeset [4701] by Nicklas Nordborg
Fixes #1180: Quota usage viewing should be possible for standard users
11:31 AM Ticket #1180 (Quota usage viewing should be possible for standard users) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1180: Quota usage viewing should be possible for …
9:57 AM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
Owner, Status changed
9:41 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) updated by Nicklas Nordborg
Component changed
9:40 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1213: Inconsistent behavior of strict equal (==) …
9:40 AM Changeset [4700] by Nicklas Nordborg
Fixes #1213: Inconsistent behavior of strict equal (==) filter when …
9:25 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) updated by Nicklas Nordborg
Owner, Status changed
9:25 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) created by Nicklas Nordborg
1. Go to any list page. 2. Filter on a string column with strict …
9:16 AM Changeset [4699] by Nicklas Nordborg
Fixes #1212: NullPointerException when trying to find dates that has a …
9:16 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) closed by Nicklas Nordborg
fixed: (In [4699]) Fixes #1212: NullPointerException when trying to find …
8:57 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) updated by Nicklas Nordborg
Owner, Status changed
Same thing happens when filter is '<>'
8:56 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) created by Nicklas Nordborg
1. Go to any list page that has at least one date column. For example, …

Dec 10, 2008:

5:27 PM Ticket #1211 (allow use of configurations with array slide importer) closed by Nicklas Nordborg
worksforme: You can!
4:54 PM Ticket #1211 (allow use of configurations with array slide importer) created by base
The array slide importer as it is in version 2.9.0 is great but it …
2:59 PM Ticket #1174 (Show creation date for items in web interface) closed by Nicklas Nordborg
fixed: (In [4698]) Fixes #1174: Show creation date for items in web interface
2:59 PM Changeset [4698] by Nicklas Nordborg
Fixes #1174: Show creation date for items in web interface
12:45 PM Ticket #1210 (Document the behaviour of underscore character '_' when filtering) updated by Nicklas Nordborg
Pattern matching is only triggered if there is a % in the search …
12:12 PM Ticket #1210 (Document the behaviour of underscore character '_' when filtering) created by Jari Häkkinen
The '_' character matches like the '.' character in regular …
11:44 AM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
(In [4697]) References #1166: Store creation date for items Increse …
11:44 AM Changeset [4697] by Nicklas Nordborg
References #1166: Store creation date for items Increse schema …
9:30 AM Ticket #1174 (Show creation date for items in web interface) updated by Nicklas Nordborg
Status, Owner changed

Dec 9, 2008:

2:55 PM Ticket #1166 (Store creation date for items) closed by Nicklas Nordborg
fixed: (In [4696]) Fixes #1166: Store creation date for items
2:55 PM Changeset [4696] by Nicklas Nordborg
Fixes #1166: Store creation date for items
2:26 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) updated by Martin Svensson
(In [4695]) References #1200 The biomaterial submenu-items are now …
2:26 PM Changeset [4695] by Martin Svensson
References #1200 The biomaterial submenu-items are now moved to a …
1:37 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) updated by Martin Svensson
Status, Owner changed
1:19 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Summary changed
11:25 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Replying to nicklas: > Keep it open if you like, but I …
11:24 AM Ticket #1209 ("Share new files and sub- directories automatically" should have a ...) updated by Nicklas Nordborg
2 is already implemented. See #981.
11:13 AM Ticket #1209 ("Share new files and sub- directories automatically" should have a ...) created by Jari Häkkinen
The problem: People works in projects and share a common project …
11:08 AM Changeset [4694] by Nicklas Nordborg
Fixes #1204: Unknown column 'pos.reporter_id' in 'field list' when …
11:08 AM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) closed by Nicklas Nordborg
fixed: (In [4694]) Fixes #1204: Unknown column 'pos.reporter_id' in 'field …
11:06 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
http://en.wikipedia.org/wiki/Null_(SQL)#Controversy
10:56 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
Keep it open if you like, but I think you will have a hard time to …
10:25 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) reopened by Jari Häkkinen
I still claim that there is a problem with the filtering. If one wants …
9:49 AM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) updated by Nicklas Nordborg
Owner, Status changed
9:39 AM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) closed by Nicklas Nordborg
fixed: (In [4693]) Fixes #1206: = and <> operators have been switched when …
9:39 AM Changeset [4693] by Nicklas Nordborg
Fixes #1206: = and <> operators have been switched when used on …
9:29 AM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) updated by Nicklas Nordborg
Owner, Status changed
9:27 AM Changeset [4692] by Nicklas Nordborg
Fixes #1207: Using empty filters (= or <>) on an annotation column …
9:27 AM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) closed by Nicklas Nordborg
fixed: (In [4692]) Fixes #1207: Using empty filters (= or <>) on an …
9:13 AM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) updated by Nicklas Nordborg
Status, Owner changed

Dec 8, 2008:

9:29 PM Changeset [4691] by Jari Häkkinen
Fixes #1208.
9:29 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) closed by Jari Häkkinen
fixed: (In [4691]) Fixes #1208.
9:28 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) updated by Jari Häkkinen
Status changed
9:28 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) created by Jari Häkkinen
For non-complete data in a bioassayset the resulting file rows has …
7:49 PM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) created by Nicklas Nordborg
1. Create an annotation type for any kind of item. Select any unit and …
7:43 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
#1206.
7:43 PM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) created by Nicklas Nordborg
1. Create an annotation type for any kind of item 2. Create two items …
7:39 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) closed by Nicklas Nordborg
invalid: This has nothing to with if you are searching on annotations or not. …
4:03 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Description changed
3:55 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) created by Jari Häkkinen
The problem is that when I use a filter like <>string then all items …
2:53 PM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) created by Nicklas Nordborg
1. From any experiment with data, select a bioassay set and then the …
2:07 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Status, Owner changed
1:27 PM Changeset [4690] by Nicklas Nordborg
Fixes #1184: Default project sharing level should be setable
1:27 PM Ticket #1184 (Default project sharing level should be setable) closed by Nicklas Nordborg
fixed: (In [4690]) Fixes #1184: Default project sharing level should be setable
9:53 AM Changeset [4689] by Nicklas Nordborg
References #1184: Default project sharing level should be setable …
9:53 AM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
(In [4689]) References #1184: Default project sharing level should be …
8:18 AM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
Status, Owner changed

Dec 5, 2008:

2:51 PM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1203: Improve error handling in plug-in …
2:51 PM Changeset [4688] by Nicklas Nordborg
Fixes #1203: Improve error handling in plug-in auto-installation wizard
1:19 PM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) updated by Nicklas Nordborg
Owner, Status changed
1:15 PM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) closed by Nicklas Nordborg
fixed: (In [4687]) Fixes #1202: PluginDefinition.loadPluginInformation throws …
1:15 PM Changeset [4687] by Nicklas Nordborg
Fixes #1202: PluginDefinition.loadPluginInformation throws strange …
12:55 PM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) updated by Nicklas Nordborg
Owner, Status changed
11:30 AM Changeset [4686] by Nicklas Nordborg
Fixes #1194: A missing raw data type breaks experiment and raw …
11:30 AM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) closed by Nicklas Nordborg
fixed: (In [4686]) Fixes #1194: A missing raw data type breaks experiment and …
8:21 AM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by Nicklas Nordborg
Status, Owner changed

Dec 4, 2008:

4:34 PM Changeset [4685] by Martin Svensson
References #979 Added some more comments for javadoc and finished the test.
4:34 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4685]) References #979 Added some more comments for javadoc and …
2:26 PM Changeset [4684] by Nicklas Nordborg
Fixes #1201: JAR path fields are not visible or editable for data file …
2:26 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) closed by Nicklas Nordborg
fixed: (In [4684]) Fixes #1201: JAR path fields are not visible or editable …
1:30 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) updated by Nicklas Nordborg
Status, Owner changed
1:30 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) closed by Nicklas Nordborg
fixed: (In [4683]) Fixes #1199: NullPointerException when using "Table …
1:29 PM Changeset [4683] by Nicklas Nordborg
Fixes #1199: NullPointerException when using "Table exporter" to …
12:31 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) updated by Nicklas Nordborg
Status, Owner changed
9:53 AM Changeset [4682] by Nicklas Nordborg
References #1175: Biomaterial lists Added role key for biomaterial lists
9:53 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4682]) References #1175: Biomaterial lists Added role key for …
9:29 AM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) created by Nicklas Nordborg
Error information while installing one or more plug-ins with the …
9:24 AM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) created by Nicklas Nordborg
This is typically child item that takes the permissions from a parent …

Dec 3, 2008:

2:04 PM Changeset [4681] by Nicklas Nordborg
References #1175: Biomaterial lists Basic web interface is now in place.
2:04 PM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4681]) References #1175: Biomaterial lists Basic web interface …
1:40 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) created by Nicklas Nordborg
A data file type may have a validator and/or meta data reader that are …
1:29 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) created by Nicklas Nordborg
The menu under "View" is growing large since all new items seems to …
1:24 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by Nicklas Nordborg
Summary changed
Ah... yes I think we have seen this before. I think BASE should be …
1:10 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by base
Sorry -- problem at this end. I checked the logs and the error results …

Dec 2, 2008:

4:21 PM Changeset [4680] by Jari Häkkinen
Correcting typo.
1:42 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) created by Nicklas Nordborg
Here is the stacktrace: […] This happens when all of the following …
9:37 AM Changeset [4679] by Nicklas Nordborg
References #1175: Biomaterial lists Core and data layer implemented.
9:37 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4679]) References #1175: Biomaterial lists Core and data layer …
9:08 AM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4678]) References #979 Removed compling error in test-class
9:08 AM Changeset [4678] by Martin Svensson
References #979 Removed compling error in test-class

Dec 1, 2008:

2:22 PM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Description changed
It is not technically possible to mix different biomaterial types in …
11:36 AM Changeset [4677] by Martin Svensson
References #979 Updated schema_version, implemented the last methods …
11:36 AM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4677]) References #979 Updated schema_version, implemented the …
8:26 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Status, Owner changed
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