Timeline



Dec 17, 2008:

10:33 PM Ticket #1220 (NullPointerException in Experiment overview if an extract is missing a ...) closed by Nicklas Nordborg
fixed: (In [4707]) Fixes #1220: NullPointerException in Experiment overview …
10:33 PM Changeset [4707] by Nicklas Nordborg
Fixes #1220: NullPointerException in Experiment overview if an extract …
10:28 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) closed by Nicklas Nordborg
duplicate: Replaced by #1220.
10:27 PM Ticket #1220 (NullPointerException in Experiment overview if an extract is missing a ...) created by Nicklas Nordborg
The original error was reported in #1217. Below is the relevant stack …
8:36 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Milestone changed
8:35 PM Changeset [4706] by Nicklas Nordborg
Fixes #1219: Deleting the active project results in …
8:35 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) closed by Nicklas Nordborg
fixed: (In [4706]) Fixes #1219: Deleting the active project results in …
8:15 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) reopened by Nicklas Nordborg
I think the active project info should be reset if the project is deleted.
8:03 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) closed by Jari Häkkinen
invalid: You are right. I have now successfully removed the share icon from the …
7:48 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Priority changed
> Basically a project should not be deletable as long as items are …
7:46 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Nicklas Nordborg
Summary changed
I don't think this has anything to do with sharing at all. It seems to …
5:28 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Jari Häkkinen
Summary changed
5:27 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) updated by Jari Häkkinen
I tried to delete the files but this is not allowed and gives this …
5:24 PM Ticket #1219 (Deleting the active project results in ItemNotFoundException in ...) created by Jari Häkkinen
I get the below stacktrace. I cannot share the items at all now. Also, …
1:20 PM Ticket #1216 (Annotation importer selects "wrong" configuration) updated by Nicklas Nordborg
Works for me. Can you please attach the file with the annotations (or …
1:10 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) updated by Nicklas Nordborg
Description changed
What is "Project Summary"? Can you tell me were to find that in BASE?
1:08 PM Ticket #1218 (Unexpected error viewing Project Summary in shared project) closed by Nicklas Nordborg
duplicate: Duplicate of #1217.
1:01 PM Ticket #1218 (Unexpected error viewing Project Summary in shared project) created by base
Hi, I have created a number of projects called 'development', …
1:01 PM Ticket #1217 (Unexpected error viewing Project Summary in shared project) created by base
Hi, I have created a number of projects called 'development', …
1:01 AM Ticket #1216 (Annotation importer selects "wrong" configuration) created by Jari Häkkinen
I have two configurations for the annotation importer. One matches my …

Dec 16, 2008:

10:42 PM Ticket #1215 (Batch importer does not update parent in some cases) updated by Nicklas Nordborg
Type changed
I would not consider this a defect. The specifications says that: In …
9:17 PM Ticket #1215 (Batch importer does not update parent in some cases) created by Jari Häkkinen
This may not be a bug. If it is not, then consider it as an …
2:33 PM Ticket #1190 (API and interface for creating biomaterial lists) updated by Nicklas Nordborg
Status, Owner changed
2:29 PM Ticket #1191 (Biomaterial lists manager API and interface) closed by Nicklas Nordborg
fixed: (In [4705]) Fixes #1191: Biomaterial lists manager API and interface
2:29 PM Changeset [4705] by Nicklas Nordborg
Fixes #1191: Biomaterial lists manager API and interface
9:39 AM Ticket #1191 (Biomaterial lists manager API and interface) updated by Nicklas Nordborg
Owner, Status changed

Dec 11, 2008:

4:27 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4704]) References #979 First commit of bioplates-support in the …
4:27 PM Changeset [4704] by Martin Svensson
References #979 First commit of bioplates-support in the webbinterface.
2:27 PM Ticket #1214 (PathInfo support in extension servlets) closed by Nicklas Nordborg
fixed: (In [4703]) Fixes #1214: PathInfo support in extension servlets
2:27 PM Changeset [4703] by Nicklas Nordborg
Fixes #1214: PathInfo support in extension servlets
2:23 PM Changeset [4702] by Nicklas Nordborg
References #1166: Store creation date for items Fixed invalid xml in …
2:23 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
(In [4702]) References #1166: Store creation date for items Fixed …
1:19 PM Ticket #1214 (PathInfo support in extension servlets) updated by Nicklas Nordborg
Description changed
1:16 PM Ticket #1214 (PathInfo support in extension servlets) updated by Nicklas Nordborg
Status, Owner changed
1:14 PM Ticket #1214 (PathInfo support in extension servlets) created by Nicklas Nordborg
Extensions that which to use servlets are currently required to follow …
11:31 AM Changeset [4701] by Nicklas Nordborg
Fixes #1180: Quota usage viewing should be possible for standard users
11:31 AM Ticket #1180 (Quota usage viewing should be possible for standard users) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1180: Quota usage viewing should be possible for …
9:57 AM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
Status, Owner changed
9:41 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) updated by Nicklas Nordborg
Component changed
9:40 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1213: Inconsistent behavior of strict equal (==) …
9:40 AM Changeset [4700] by Nicklas Nordborg
Fixes #1213: Inconsistent behavior of strict equal (==) filter when …
9:25 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) updated by Nicklas Nordborg
Owner, Status changed
9:25 AM Ticket #1213 (Inconsistent behavior of strict equal (==) filter when filter value ...) created by Nicklas Nordborg
1. Go to any list page. 2. Filter on a string column with strict …
9:16 AM Changeset [4699] by Nicklas Nordborg
Fixes #1212: NullPointerException when trying to find dates that has a …
9:16 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) closed by Nicklas Nordborg
fixed: (In [4699]) Fixes #1212: NullPointerException when trying to find …
8:57 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) updated by Nicklas Nordborg
Owner, Status changed
Same thing happens when filter is '<>'
8:56 AM Ticket #1212 (NullPointerException when trying to find dates that has a null value) created by Nicklas Nordborg
1. Go to any list page that has at least one date column. For example, …

Dec 10, 2008:

5:27 PM Ticket #1211 (allow use of configurations with array slide importer) closed by Nicklas Nordborg
worksforme: You can!
4:54 PM Ticket #1211 (allow use of configurations with array slide importer) created by base
The array slide importer as it is in version 2.9.0 is great but it …
2:59 PM Ticket #1174 (Show creation date for items in web interface) closed by Nicklas Nordborg
fixed: (In [4698]) Fixes #1174: Show creation date for items in web interface
2:59 PM Changeset [4698] by Nicklas Nordborg
Fixes #1174: Show creation date for items in web interface
12:45 PM Ticket #1210 (Document the behaviour of underscore character '_' when filtering) updated by Nicklas Nordborg
Pattern matching is only triggered if there is a % in the search …
12:12 PM Ticket #1210 (Document the behaviour of underscore character '_' when filtering) created by Jari Häkkinen
The '_' character matches like the '.' character in regular …
11:44 AM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
(In [4697]) References #1166: Store creation date for items Increse …
11:44 AM Changeset [4697] by Nicklas Nordborg
References #1166: Store creation date for items Increse schema …
9:30 AM Ticket #1174 (Show creation date for items in web interface) updated by Nicklas Nordborg
Status, Owner changed

Dec 9, 2008:

2:55 PM Ticket #1166 (Store creation date for items) closed by Nicklas Nordborg
fixed: (In [4696]) Fixes #1166: Store creation date for items
2:55 PM Changeset [4696] by Nicklas Nordborg
Fixes #1166: Store creation date for items
2:26 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) updated by Martin Svensson
(In [4695]) References #1200 The biomaterial submenu-items are now …
2:26 PM Changeset [4695] by Martin Svensson
References #1200 The biomaterial submenu-items are now moved to a …
1:37 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) updated by Martin Svensson
Owner, Status changed
1:19 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Summary changed
11:25 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Replying to nicklas: > Keep it open if you like, but I …
11:24 AM Ticket #1209 ("Share new files and sub- directories automatically" should have a ...) updated by Nicklas Nordborg
2 is already implemented. See #981.
11:13 AM Ticket #1209 ("Share new files and sub- directories automatically" should have a ...) created by Jari Häkkinen
The problem: People works in projects and share a common project …
11:08 AM Changeset [4694] by Nicklas Nordborg
Fixes #1204: Unknown column 'pos.reporter_id' in 'field list' when …
11:08 AM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) closed by Nicklas Nordborg
fixed: (In [4694]) Fixes #1204: Unknown column 'pos.reporter_id' in 'field …
11:06 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
http://en.wikipedia.org/wiki/Null_(SQL)#Controversy
10:56 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
Keep it open if you like, but I think you will have a hard time to …
10:25 AM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) reopened by Jari Häkkinen
I still claim that there is a problem with the filtering. If one wants …
9:49 AM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) updated by Nicklas Nordborg
Status, Owner changed
9:39 AM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) closed by Nicklas Nordborg
fixed: (In [4693]) Fixes #1206: = and <> operators have been switched when …
9:39 AM Changeset [4693] by Nicklas Nordborg
Fixes #1206: = and <> operators have been switched when used on …
9:29 AM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) updated by Nicklas Nordborg
Status, Owner changed
9:27 AM Changeset [4692] by Nicklas Nordborg
Fixes #1207: Using empty filters (= or <>) on an annotation column …
9:27 AM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) closed by Nicklas Nordborg
fixed: (In [4692]) Fixes #1207: Using empty filters (= or <>) on an …
9:13 AM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) updated by Nicklas Nordborg
Status, Owner changed

Dec 8, 2008:

9:29 PM Changeset [4691] by Jari Häkkinen
Fixes #1208.
9:29 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) closed by Jari Häkkinen
fixed: (In [4691]) Fixes #1208.
9:28 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) updated by Jari Häkkinen
Status changed
9:28 PM Ticket #1208 (BioAssaySetExporter produces malformed data for plainMatrix format) created by Jari Häkkinen
For non-complete data in a bioassayset the resulting file rows has …
7:49 PM Ticket #1207 (Using empty filters (= or <>) on an annotation column with units ...) created by Nicklas Nordborg
1. Create an annotation type for any kind of item. Select any unit and …
7:43 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Nicklas Nordborg
#1206.
7:43 PM Ticket #1206 (= and <> operators have been switched when used on annotations and ...) created by Nicklas Nordborg
1. Create an annotation type for any kind of item 2. Create two items …
7:39 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) closed by Nicklas Nordborg
invalid: This has nothing to with if you are searching on annotations or not. …
4:03 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) updated by Jari Häkkinen
Description changed
3:55 PM Ticket #1205 (Serious problem filtering on annotations where one whishes to exlude a ...) created by Jari Häkkinen
The problem is that when I use a filter like <>string then all items …
2:53 PM Ticket #1204 (Unknown column 'pos.reporter_id' in 'field list' when using 'merge on ...) created by Nicklas Nordborg
1. From any experiment with data, select a bioassay set and then the …
2:07 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Status, Owner changed
1:27 PM Changeset [4690] by Nicklas Nordborg
Fixes #1184: Default project sharing level should be setable
1:27 PM Ticket #1184 (Default project sharing level should be setable) closed by Nicklas Nordborg
fixed: (In [4690]) Fixes #1184: Default project sharing level should be setable
9:53 AM Changeset [4689] by Nicklas Nordborg
References #1184: Default project sharing level should be setable …
9:53 AM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
(In [4689]) References #1184: Default project sharing level should be …
8:18 AM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
Status, Owner changed

Dec 5, 2008:

2:51 PM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1203: Improve error handling in plug-in …
2:51 PM Changeset [4688] by Nicklas Nordborg
Fixes #1203: Improve error handling in plug-in auto-installation wizard
1:19 PM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) updated by Nicklas Nordborg
Owner, Status changed
1:15 PM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) closed by Nicklas Nordborg
fixed: (In [4687]) Fixes #1202: PluginDefinition.loadPluginInformation throws …
1:15 PM Changeset [4687] by Nicklas Nordborg
Fixes #1202: PluginDefinition.loadPluginInformation throws strange …
12:55 PM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) updated by Nicklas Nordborg
Owner, Status changed
11:30 AM Changeset [4686] by Nicklas Nordborg
Fixes #1194: A missing raw data type breaks experiment and raw …
11:30 AM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) closed by Nicklas Nordborg
fixed: (In [4686]) Fixes #1194: A missing raw data type breaks experiment and …
8:21 AM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by Nicklas Nordborg
Owner, Status changed

Dec 4, 2008:

4:34 PM Changeset [4685] by Martin Svensson
References #979 Added some more comments for javadoc and finished the test.
4:34 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4685]) References #979 Added some more comments for javadoc and …
2:26 PM Changeset [4684] by Nicklas Nordborg
Fixes #1201: JAR path fields are not visible or editable for data file …
2:26 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) closed by Nicklas Nordborg
fixed: (In [4684]) Fixes #1201: JAR path fields are not visible or editable …
1:30 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) updated by Nicklas Nordborg
Status, Owner changed
1:30 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) closed by Nicklas Nordborg
fixed: (In [4683]) Fixes #1199: NullPointerException when using "Table …
1:29 PM Changeset [4683] by Nicklas Nordborg
Fixes #1199: NullPointerException when using "Table exporter" to …
12:31 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) updated by Nicklas Nordborg
Status, Owner changed
9:53 AM Changeset [4682] by Nicklas Nordborg
References #1175: Biomaterial lists Added role key for biomaterial lists
9:53 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4682]) References #1175: Biomaterial lists Added role key for …
9:29 AM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) created by Nicklas Nordborg
Error information while installing one or more plug-ins with the …
9:24 AM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) created by Nicklas Nordborg
This is typically child item that takes the permissions from a parent …

Dec 3, 2008:

2:04 PM Changeset [4681] by Nicklas Nordborg
References #1175: Biomaterial lists Basic web interface is now in place.
2:04 PM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4681]) References #1175: Biomaterial lists Basic web interface …
1:40 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) created by Nicklas Nordborg
A data file type may have a validator and/or meta data reader that are …
1:29 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) created by Nicklas Nordborg
The menu under "View" is growing large since all new items seems to …
1:24 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by Nicklas Nordborg
Summary changed
Ah... yes I think we have seen this before. I think BASE should be …
1:10 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by base
Sorry -- problem at this end. I checked the logs and the error results …

Dec 2, 2008:

4:21 PM Changeset [4680] by Jari Häkkinen
Correcting typo.
1:42 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) created by Nicklas Nordborg
Here is the stacktrace: […] This happens when all of the following …
9:37 AM Changeset [4679] by Nicklas Nordborg
References #1175: Biomaterial lists Core and data layer implemented.
9:37 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4679]) References #1175: Biomaterial lists Core and data layer …
9:08 AM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4678]) References #979 Removed compling error in test-class
9:08 AM Changeset [4678] by Martin Svensson
References #979 Removed compling error in test-class

Dec 1, 2008:

2:22 PM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Description changed
It is not technically possible to mix different biomaterial types in …
11:36 AM Changeset [4677] by Martin Svensson
References #979 Updated schema_version, implemented the last methods …
11:36 AM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4677]) References #979 Updated schema_version, implemented the …
8:26 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Owner, Status changed

Nov 28, 2008:

2:05 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) updated by Nicklas Nordborg
http://baseplugins.thep.lu.se/ticket/149
1:38 PM Changeset [4676] by Nicklas Nordborg
References #1196: BASE is trying to set a cookie when editing an …
1:38 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) updated by Nicklas Nordborg
(In [4676]) References #1196: BASE is trying to set a cookie when …
1:38 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) updated by Johan Vallon-Christersson
Have added all this as ticket on the BASE plugins site: …
1:37 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) updated by Johan Vallon-Christersson
net.sf.basedb.core.BaseException: The query has already been executed. …
1:35 PM Changeset [4675] by Nicklas Nordborg
Fixes #1196: BASE is trying to set a cookie when editing an …
1:35 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) closed by Nicklas Nordborg
fixed: (In [4675]) Fixes #1196: BASE is trying to set a cookie when editing …
1:01 PM Changeset [4674] by Nicklas Nordborg
Fixes #1172: Make it visually clear when a filter is active.
1:01 PM Ticket #1172 (Make it visually clear when a filter is active.) closed by Nicklas Nordborg
fixed: (In [4674]) Fixes #1172: Make it visually clear when a filter is active.
12:55 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) updated by Nicklas Nordborg
And when you do, please copy the complete text from the "Stack trace" …
12:52 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) closed by Nicklas Nordborg
invalid: Plese report this error on the BASE plugins site: …
12:51 PM Ticket #1197 (Plugin running time unexpected output while executing) closed by Nicklas Nordborg
invalid: This is a server configuration issue. Eg. The job agent has a …
12:47 PM Picture 8.png attached to Ticket #1198 by Johan Vallon-Christersson
12:47 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) created by Johan Vallon-Christersson
When trying to run plugin 'Illumina detection P-value calculation' I …
12:15 PM Ticket #1197 (Plugin running time unexpected output while executing) updated by Johan Vallon-Christersson
Replying to johan: > When running a plugin (Illumina …
12:13 PM Picture 6.png attached to Ticket #1197 by Johan Vallon-Christersson
12:11 PM Ticket #1197 (Plugin running time unexpected output while executing) created by Johan Vallon-Christersson
When running a plugin (Illumina package) the running time reads +6h …
11:39 AM Ticket #1172 (Make it visually clear when a filter is active.) updated by Nicklas Nordborg
Owner, Status changed
11:16 AM Changeset [4673] by Nicklas Nordborg
Fixes #1186: Column display size should not become too large in …
11:16 AM Ticket #1186 (Column display size should not become too large in listings) closed by Nicklas Nordborg
fixed: (In [4673]) Fixes #1186: Column display size should not become too …

Nov 27, 2008:

10:32 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) updated by Nicklas Nordborg
Description changed
10:29 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) created by Nicklas Nordborg
1. Create a new item that supports annotations, for example a …
7:43 PM Ticket #1195 (Problem when importing negative values for annotations with float as ...) updated by Nicklas Nordborg
It works when I try it. Have you set the correct decimal separator? …
7:26 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by Nicklas Nordborg
Works fine when I try it. Can you check the log file for error messages?
4:39 PM Changeset [4672] by Martin Svensson
References #979 Missed some files in the last commit.
4:39 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4672]) References #979 Missed some files in the last commit.
4:33 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4671]) References #979 Added keyword to svn-properties
4:33 PM Changeset [4671] by Martin Svensson
References #979 Added keyword to svn-properties
4:24 PM Changeset [4670] by Martin Svensson
References #979 Added data- and item classes needed by BioMaterial
4:24 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4670]) References #979 Added data- and item classes needed by …
4:23 PM Ticket #1195 (Problem when importing negative values for annotations with float as ...) created by base
I tried to annotate a number of my extracts using the annotation …
4:05 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) updated by base
P.S.: I also just noticed that I cannot delete items from the …
3:58 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) created by base
Sorting and Filtering in the Experiments List View is not working at …

Nov 26, 2008:

12:06 PM Milestone BASE 2.9 completed
12:05 PM Changeset [4669] by Nicklas Nordborg
Merged 2.9-stable@4643:4666 to trunk.
11:45 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.9.0 (diff)
11:30 AM Changeset [4668] by Nicklas Nordborg
Changes for future release 2.9.1
11:14 AM Changeset [4667] by Nicklas Nordborg
Tagging version 2.9
11:13 AM Changeset [4666] by Nicklas Nordborg
Preparing release 2.9
9:29 AM Ticket #979 (Biomaterial LIMS) updated by Jari Häkkinen
Description changed
9:26 AM Ticket #1175 (Biomaterial lists) updated by Jari Häkkinen
Description changed

Nov 25, 2008:

12:51 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
Owner, Status changed
11:42 AM Changeset [4665] by Jari Häkkinen
Updated current BASE team.
10:01 AM Ticket #1186 (Column display size should not become too large in listings) updated by Nicklas Nordborg
Owner, Priority, Status, Milestone changed
I have some more tests with a CSS/Javascript solution since I think …

Nov 24, 2008:

2:49 PM Changeset [4664] by Martin Svensson
Stylesheet is now included in doc/historical/ when running ant dist.
2:13 PM Historical edited by Martin Svensson
Changed links to historical documents (diff)
11:40 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Description changed
11:39 AM Changeset [4663] by Nicklas Nordborg
References #1175: Biomaterial lists Added BioMaterialList to UML diagram
11:39 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
(In [4663]) References #1175: Biomaterial lists Added BioMaterialList
9:25 AM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by Martin Svensson
fixed: The file has been added to the test-data repository.
9:17 AM Ticket #1193 (Generic tree-like item overview) created by Nicklas Nordborg
Implement a function that is similar to the "Experiment overview" that …
9:05 AM Ticket #1192 (Use biomaterial lists as filters) updated by Nicklas Nordborg
Description changed
9:04 AM Ticket #1191 (Biomaterial lists manager API and interface) updated by Nicklas Nordborg
Description changed
9:04 AM Ticket #1175 (Biomaterial lists) updated by Nicklas Nordborg
Description changed
9:03 AM Ticket #1192 (Use biomaterial lists as filters) created by Nicklas Nordborg
This depends on #1175. On any given list page with biomaterials …
8:59 AM Ticket #1191 (Biomaterial lists manager API and interface) created by Nicklas Nordborg
This depends on #1175. Add support for merging and manipulating …
8:56 AM Ticket #1190 (API and interface for creating biomaterial lists) created by Nicklas Nordborg
This depends on #1175. In the web interface it should be possible to …
8:34 AM Changeset [4662] by Nicklas Nordborg
Fixes #1181: No navigation path to enclosing directory on single file …
8:34 AM Ticket #1181 (No navigation path to enclosing directory on single file view page) closed by Nicklas Nordborg
fixed: (In [4662]) Fixes #1181: No navigation path to enclosing directory on …
8:33 AM Ticket #1181 (No navigation path to enclosing directory on single file view page) updated by Nicklas Nordborg
Status, Owner, Milestone changed

Nov 21, 2008:

8:37 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) reopened by Nicklas Nordborg
The 'rawbioassay_out.txt' file is missing in the repository. Running …
2:33 PM Changeset [4661] by Nicklas Nordborg
Fixes #1183: Filtering on file size does not accept units Also fixed …
2:33 PM Ticket #1183 (Filtering on file size does not accept units) closed by Nicklas Nordborg
fixed: (In [4661]) Fixes #1183: Filtering on file size does not accept units …
1:35 PM Ticket #1186 (Column display size should not become too large in listings) updated by Nicklas Nordborg
I made some tests with this some time ago. It is rather easy to …
1:20 PM Ticket #1178 (Access a directory through file manager when not all parent ...) updated by Martin Svensson
Summary changed
1:20 PM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
Milestone, Component changed
It should be possible to add this as a property on the project. It …
1:13 PM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
Milestone, Priority changed
It should be possible to link from the overview information on 'Home' …
1:10 PM Ticket #1183 (Filtering on file size does not accept units) updated by Nicklas Nordborg
Status, Owner, Milestone, Priority, Summary changed
File sizes was never added as a units, but it should not be hard to …
1:02 PM Changeset [4660] by Nicklas Nordborg
Fixes #1189: Can't import annotation to raw bioassays
1:02 PM Ticket #1189 (Can't import annotation to raw bioassays) closed by Nicklas Nordborg
fixed: (In [4660]) Fixes #1189: Can't import annotation to raw bioassays
12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) updated by Nicklas Nordborg
Status, Owner changed
12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) created by Nicklas Nordborg
Start a job configuration with the Annotation importer on the 'Raw …
11:45 AM Ticket #522 (Write "Why use BASE" section) updated by Jari Häkkinen
Milestone changed
10:31 AM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) closed by Jari Häkkinen
fixed: (In [4659]) Fixes #1160.
10:31 AM Changeset [4659] by Jari Häkkinen
Fixes #1160.
10:25 AM Ticket #1188 (Create a super batch importer?) created by Jari Häkkinen
With the new really nice batch importers available a natural idea …
10:19 AM Ticket #1187 (Can batch importers be made smart enough to import data to several ...) created by Jari Häkkinen
The use case we would like to support is that the laboratory staff …
10:05 AM Ticket #1186 (Column display size should not become too large in listings) created by Jari Häkkinen
In many cases the table listings are hampered by too much information …
9:51 AM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
Summary, Description changed
9:47 AM Changeset [4658] by Nicklas Nordborg
References #979: Biomaterial LIMS Added BioLIMS to UML diagram.
9:47 AM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
(In [4658]) References #979: Biomaterial LIMS Added BioLIMS to UML …
9:21 AM Ticket #1185 (Manual transform creator) created by Jari Häkkinen
Normally all transforms are created by plug-ins in BASE. However, many …
9:16 AM Ticket #1184 (Default project sharing level should be setable) created by Jari Häkkinen
Currently the sharing level is set but the setting used in the …
9:13 AM Ticket #1183 (Filtering on file size does not accept units) created by Jari Häkkinen
It would be nice to be able to filter on file size using units like kB …
9:06 AM Ticket #727 (Add presentations and publications to the wiki) closed by Jari Häkkinen
wontfix
9:04 AM Changeset [4657] by Jari Häkkinen
Fixing typo.

Nov 20, 2008:

1:36 PM Changeset [4656] by Nicklas Nordborg
References #792: Add support for units to annotation values Test …
1:36 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4656]) References #792: Add support for units to annotation …
1:15 PM Changeset [4655] by Nicklas Nordborg
References #1145 and #1151. Added instructions in the documentation …
1:15 PM Tickets #1145,​1151 batch updated by Nicklas Nordborg
(In [4655]) References #1145 and #1151. Added instructions in the …
1:13 PM Changeset [4654] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
1:13 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4654]) References #1145: Make the generic raw data importer …
12:42 PM Changeset [4653] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
12:42 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4653]) References #1145: Make the generic raw data importer …
12:05 PM Changeset [4652] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Changed …
12:05 PM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
(In [4652]) References #1133: Experimental factors - inherit …
11:59 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
(In [4651]) References #1133: Experimental factors - inherit …
11:59 AM Changeset [4651] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Closing …
8:22 AM Ticket #1182 (Groups with hidden members) updated by Nicklas Nordborg
Milestone changed
The EVERYONE groups is very special indeed, because no user is …

Nov 19, 2008:

11:13 PM Ticket #1182 (Groups with hidden members) created by Jari Häkkinen
Two different types of group in BASe would be useful. Actually there …
10:49 PM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Jari Häkkinen
Yes but ... Of course the permission allows the user to accomplish …
4:36 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) updated by Nicklas Nordborg
No, this is not the same as #1178. Yes, I think the fix is easy. …
4:27 PM Changeset [4650] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixed …
4:27 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4650]) References #792: Add support for units to annotation …
2:46 PM Changeset [4649] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
2:46 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4649]) Fixes #1112: Create new items with project default …
1:04 PM Ticket #1171 (Add BioLIMS support to batch importers) updated by Johan Vallon-Christersson
Description changed
12:24 PM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
> It is also be possible for any user to go to Administrate -> …
12:17 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) created by base
I don't think this is related to ticket #1178 ... Example: from a raw …
12:10 PM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status changed
12:10 PM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status changed
12:10 PM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
There is a serious bug in the fix for this that causes all users to …
11:27 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Jari Häkkinen
Replying to nicklas: > A possible workaround if things …
11:27 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
It is also be possible for any user to go to Administrate -> User, …
11:22 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Jari Häkkinen
Summary changed
11:22 AM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
The permission you are looking for is "Disk usage". This is the 10th …
11:18 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
A workaround is to create a project or an item that it is possible to …
9:48 AM Ticket #1180 (Quota usage viewing should be possible for standard users) created by Jari Häkkinen
Currently a user cannot see a detail view of their disk usage. The …
9:41 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) created by Jari Häkkinen

Nov 18, 2008:

6:54 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
A possible workaround if things have been done in the wrong order is …
6:04 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
The utf8 fix must be executed against a 2.8 database BEFORE …
4:41 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Jari Häkkinen
Replying to nicklas: > (In [4636]) References #1169: …
2:51 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) closed by Nicklas Nordborg
fixed: Tested on backup of demo-database. * Database size: 600+600 MB. * …
12:41 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Nicklas Nordborg
(In [4648]) References #1092: Add listing of child items that are the …
12:41 PM Changeset [4648] by Nicklas Nordborg
References #1092: Add listing of child items that are the same type as …
11:35 AM Changeset [4647] by Nicklas Nordborg
Adding 'nice' to test scripts to keep the computer usable while they …
10:53 AM Changeset [4646] by Nicklas Nordborg
References #1112: Create new items with project default properties …
10:53 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
(In [4646]) References #1112: Create new items with project default …
9:58 AM Changeset [4645] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …
9:58 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
(In [4645]) References #1169: Create a function that changes an …
8:47 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) closed by Nicklas Nordborg
duplicate: Replaced by #1178.
8:47 AM Ticket #1178 (Access a directory through file manager when not all parent ...) created by Nicklas Nordborg
See #982 for background. The file manager loads the directory tree …
8:21 AM Changeset [4644] by Nicklas Nordborg
Changes for future release 2.10
8:19 AM Changeset [4643] by Nicklas Nordborg
Forking new minor version 2.9 branch

Nov 17, 2008:

4:21 PM Changeset [4642] by Martin Svensson
Fixes #1176 Version number should be included in title
4:21 PM Ticket #1176 (Version number should be included in title) closed by Martin Svensson
fixed: (In [4642]) Fixes #1176 Version number should be included in title
4:20 PM Ticket #1177 (Building pdf documentation fails) closed by Martin Svensson
fixed: Fixed in [4641]
4:16 PM Changeset [4641] by Martin Svensson
Fixing #1177 Building pdf documentation fails
3:42 PM Ticket #1177 (Building pdf documentation fails) updated by Martin Svensson
Status, Owner changed
3:41 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Nicklas Nordborg
Milestone changed
It is a limitation in the web client. It loads directories top-down …
3:35 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Replying to nicklas: > Are all directories on the path …
2:48 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Nicklas Nordborg
(In [4640]) References #1151: Create a batch-importer version of the …
2:48 PM Changeset [4640] by Nicklas Nordborg
References #1151: Create a batch-importer version of the 'roles' test …
2:46 PM Changeset [4639] by Nicklas Nordborg
References #1149: Mark related items for removal when "parent" item is …
2:46 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Nicklas Nordborg
(In [4639]) References #1149: Mark related items for removal when …
2:25 PM Ticket #1176 (Version number should be included in title) updated by Martin Svensson
Status changed
2:24 PM Ticket #1177 (Building pdf documentation fails) created by Nicklas Nordborg
Last part of the output: […] This is probably a side-effect of …
1:57 PM Ticket #1176 (Version number should be included in title) created by Martin Svensson
The documentation title should include which base-version the text is …
1:53 PM Ticket #1175 (Biomaterial lists) created by Nicklas Nordborg
It should be possible to group biomaterials into lists (similar to …
1:44 PM Milestone BASE 2.8.5 completed
2.8.4 was the last 2.8-related release.
1:42 PM Ticket #966 (Registered and possibly last updated – add to all/most items) closed by Nicklas Nordborg
duplicate: #1166 implements the 'creation date' part and #108 is for the rest.
1:40 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Description changed
1:39 PM Ticket #1174 (Show creation date for items in web interface) created by Nicklas Nordborg
#1166 added support for storing dates to the core. We need to modify …
1:37 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Milestone, Summary changed
1:32 PM Ticket #1173 (Make it visually clear when no project is active) created by Nicklas Nordborg
Currently, it is possible to see which project that is active in the …
1:27 PM Ticket #1172 (Make it visually clear when a filter is active.) created by Nicklas Nordborg
The current implementation of the various lists in the web interface …
1:22 PM Ticket #1171 (Add BioLIMS support to batch importers) created by Nicklas Nordborg
The batch importers that works with biomaterial items …
1:18 PM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
Milestone, Description changed
1:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Nicklas Nordborg
Are all directories on the path shared to UserB? The directory tree …
1:02 PM Changeset [4638] by Nicklas Nordborg
Fixes #1170: Move old update warnings to an appendix
1:02 PM Ticket #1170 (Move old update warnings to an appendix) closed by Nicklas Nordborg
fixed: (In [4638]) Fixes #1170: Move old update warnings to an appendix
11:38 AM Changeset [4637] by Nicklas Nordborg
Fixes #1168: Require UTF-8 to be used as database character set
11:38 AM Ticket #1168 (Require UTF-8 to be used as database character set) closed by Nicklas Nordborg
fixed: (In [4637]) Fixes #1168: Require UTF-8 to be used as database character set
11:29 AM Ticket #1170 (Move old update warnings to an appendix) created by Nicklas Nordborg
The update documentation starts with lots of warnings with important …
9:35 AM Changeset [4636] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …
9:35 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
(In [4636]) References #1169: Create a function that changes an …
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