Timeline



Dec 5, 2008:

2:51 PM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1203: Improve error handling in plug-in …
2:51 PM Changeset [4688] by Nicklas Nordborg
Fixes #1203: Improve error handling in plug-in auto-installation wizard
1:15 PM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) closed by Nicklas Nordborg
fixed: (In [4687]) Fixes #1202: PluginDefinition?.loadPluginInformation throws …
1:15 PM Changeset [4687] by Nicklas Nordborg
Fixes #1202: PluginDefinition?.loadPluginInformation throws strange …
11:30 AM Changeset [4686] by Nicklas Nordborg
Fixes #1194: A missing raw data type breaks experiment and raw …
11:30 AM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) closed by Nicklas Nordborg
fixed: (In [4686]) Fixes #1194: A missing raw data type breaks experiment and …

Dec 4, 2008:

4:34 PM Changeset [4685] by Martin Svensson
References #979 Added some more comments for javadoc and finished the test.
2:26 PM Changeset [4684] by Nicklas Nordborg
Fixes #1201: JAR path fields are not visible or editable for data file …
2:26 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) closed by Nicklas Nordborg
fixed: (In [4684]) Fixes #1201: JAR path fields are not visible or editable …
1:30 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) closed by Nicklas Nordborg
fixed: (In [4683]) Fixes #1199: NullPointerException? when using "Table …
1:29 PM Changeset [4683] by Nicklas Nordborg
Fixes #1199: NullPointerException? when using "Table exporter" to …
9:53 AM Changeset [4682] by Nicklas Nordborg
References #1175: Biomaterial lists Added role key for biomaterial lists
9:29 AM Ticket #1203 (Improve error handling in plug-in auto-installation wizard) created by Nicklas Nordborg
Error information while installing one or more plug-ins with the …
9:24 AM Ticket #1202 (PluginDefinition.loadPluginInformation throws strange error message if ...) created by Nicklas Nordborg
This is typically child item that takes the permissions from a parent …

Dec 3, 2008:

2:04 PM Changeset [4681] by Nicklas Nordborg
References #1175: Biomaterial lists Basic web interface is now in place.
1:40 PM Ticket #1201 (JAR path fields are not visible or editable for data file types) created by Nicklas Nordborg
A data file type may have a validator and/or meta data reader that are …
1:29 PM Ticket #1200 (Biomaterial LIMS as a top-level menu item) created by Nicklas Nordborg
The menu under "View" is growing large since all new items seems to …

Dec 2, 2008:

4:21 PM Changeset [4680] by Jari Häkkinen
Correcting typo.
1:42 PM Ticket #1199 (NullPointerException when using "Table exporter" to export annotations) created by Nicklas Nordborg
Here is the stacktrace: […] This happens when all of the following …
9:37 AM Changeset [4679] by Nicklas Nordborg
References #1175: Biomaterial lists Core and data layer implemented.
9:08 AM Changeset [4678] by Martin Svensson
References #979 Removed compling error in test-class

Dec 1, 2008:

11:36 AM Changeset [4677] by Martin Svensson
References #979 Updated schema_version, implemented the last methods …

Nov 28, 2008:

1:38 PM Changeset [4676] by Nicklas Nordborg
References #1196: BASE is trying to set a cookie when editing an …
1:35 PM Changeset [4675] by Nicklas Nordborg
Fixes #1196: BASE is trying to set a cookie when editing an …
1:35 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) closed by Nicklas Nordborg
fixed: (In [4675]) Fixes #1196: BASE is trying to set a cookie when editing …
1:01 PM Changeset [4674] by Nicklas Nordborg
Fixes #1172: Make it visually clear when a filter is active.
1:01 PM Ticket #1172 (Make it visually clear when a filter is active.) closed by Nicklas Nordborg
fixed: (In [4674]) Fixes #1172: Make it visually clear when a filter is active.
12:52 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) closed by Nicklas Nordborg
invalid: Plese report this error on the BASE plugins site: …
12:51 PM Ticket #1197 (Plugin running time unexpected output while executing) closed by Nicklas Nordborg
invalid: This is a server configuration issue. Eg. The job agent has a …
12:47 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) created by Johan Vallon-Christersson
When trying to run plugin 'Illumina detection P-value calculation' I …
12:11 PM Ticket #1197 (Plugin running time unexpected output while executing) created by Johan Vallon-Christersson
When running a plugin (Illumina package) the running time reads +6h …
11:16 AM Changeset [4673] by Nicklas Nordborg
Fixes #1186: Column display size should not become too large in …
11:16 AM Ticket #1186 (Column display size should not become too large in listings) closed by Nicklas Nordborg
fixed: (In [4673]) Fixes #1186: Column display size should not become too …

Nov 27, 2008:

10:29 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) created by Nicklas Nordborg
1. Create a new item that supports annotations, for example a …
4:39 PM Changeset [4672] by Martin Svensson
References #979 Missed some files in the last commit.
4:33 PM Changeset [4671] by Martin Svensson
References #979 Added keyword to svn-properties
4:24 PM Changeset [4670] by Martin Svensson
References #979 Added data- and item classes needed by BioMaterial?
4:23 PM Ticket #1195 (Problem when importing negative values for annotations with float as ...) created by base
I tried to annotate a number of my extracts using the annotation …
3:58 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) created by base
Sorting and Filtering in the Experiments List View is not working at …

Nov 26, 2008:

12:06 PM Milestone BASE 2.9 completed
12:05 PM Changeset [4669] by Nicklas Nordborg
Merged 2.9-stable@4643:4666 to trunk.
11:45 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.9.0 (diff)
11:30 AM Changeset [4668] by Nicklas Nordborg
Changes for future release 2.9.1
11:14 AM Changeset [4667] by Nicklas Nordborg
Tagging version 2.9
11:13 AM Changeset [4666] by Nicklas Nordborg
Preparing release 2.9

Nov 25, 2008:

11:42 AM Changeset [4665] by Jari Häkkinen
Updated current BASE team.

Nov 24, 2008:

2:49 PM Changeset [4664] by Martin Svensson
Stylesheet is now included in doc/historical/ when running ant dist.
2:13 PM Historical edited by Martin Svensson
Changed links to historical documents (diff)
11:39 AM Changeset [4663] by Nicklas Nordborg
References #1175: Biomaterial lists Added BioMaterialList? to UML diagram
9:25 AM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by Martin Svensson
fixed: The file has been added to the test-data repository.
9:17 AM Ticket #1193 (Generic tree-like item overview) created by Nicklas Nordborg
Implement a function that is similar to the "Experiment overview" that …
9:03 AM Ticket #1192 (Use biomaterial lists as filters) created by Nicklas Nordborg
This depends on #1175. On any given list page with biomaterials …
8:59 AM Ticket #1191 (Biomaterial lists manager API and interface) created by Nicklas Nordborg
This depends on #1175. Add support for merging and manipulating …
8:56 AM Ticket #1190 (API and interface for creating biomaterial lists) created by Nicklas Nordborg
This depends on #1175. In the web interface it should be possible to …
8:34 AM Changeset [4662] by Nicklas Nordborg
Fixes #1181: No navigation path to enclosing directory on single file …
8:34 AM Ticket #1181 (No navigation path to enclosing directory on single file view page) closed by Nicklas Nordborg
fixed: (In [4662]) Fixes #1181: No navigation path to enclosing directory on …

Nov 21, 2008:

8:37 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) reopened by Nicklas Nordborg
The 'rawbioassay_out.txt' file is missing in the repository. Running …
2:33 PM Changeset [4661] by Nicklas Nordborg
Fixes #1183: Filtering on file size does not accept units Also fixed …
2:33 PM Ticket #1183 (Filtering on file size does not accept units) closed by Nicklas Nordborg
fixed: (In [4661]) Fixes #1183: Filtering on file size does not accept units …
1:02 PM Changeset [4660] by Nicklas Nordborg
Fixes #1189: Can't import annotation to raw bioassays
1:02 PM Ticket #1189 (Can't import annotation to raw bioassays) closed by Nicklas Nordborg
fixed: (In [4660]) Fixes #1189: Can't import annotation to raw bioassays
12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) created by Nicklas Nordborg
Start a job configuration with the Annotation importer on the 'Raw …
10:31 AM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) closed by Jari Häkkinen
fixed: (In [4659]) Fixes #1160.
10:31 AM Changeset [4659] by Jari Häkkinen
Fixes #1160.
10:25 AM Ticket #1188 (Create a super batch importer?) created by Jari Häkkinen
With the new really nice batch importers available a natural idea …
10:19 AM Ticket #1187 (Can batch importers be made smart enough to import data to several ...) created by Jari Häkkinen
The use case we would like to support is that the laboratory staff …
10:05 AM Ticket #1186 (Column display size should not become too large in listings) created by Jari Häkkinen
In many cases the table listings are hampered by too much information …
9:47 AM Changeset [4658] by Nicklas Nordborg
References #979: Biomaterial LIMS Added BioLIMS to UML diagram.
9:21 AM Ticket #1185 (Manual transform creator) created by Jari Häkkinen
Normally all transforms are created by plug-ins in BASE. However, many …
9:16 AM Ticket #1184 (Default project sharing level should be setable) created by Jari Häkkinen
Currently the sharing level is set but the setting used in the …
9:13 AM Ticket #1183 (Filtering on file size does not accept units) created by Jari Häkkinen
It would be nice to be able to filter on file size using units like kB …
9:06 AM Ticket #727 (Add presentations and publications to the wiki) closed by Jari Häkkinen
wontfix
9:04 AM Changeset [4657] by Jari Häkkinen
Fixing typo.

Nov 20, 2008:

1:36 PM Changeset [4656] by Nicklas Nordborg
References #792: Add support for units to annotation values Test …
1:15 PM Changeset [4655] by Nicklas Nordborg
References #1145 and #1151. Added instructions in the documentation …
1:13 PM Changeset [4654] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
12:42 PM Changeset [4653] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
12:05 PM Changeset [4652] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Changed …
11:59 AM Changeset [4651] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Closing …

Nov 19, 2008:

11:13 PM Ticket #1182 (Groups with hidden members) created by Jari Häkkinen
Two different types of group in BASe would be useful. Actually there …
4:27 PM Changeset [4650] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixed …
2:46 PM Changeset [4649] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
2:46 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4649]) Fixes #1112: Create new items with project default …
12:17 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) created by base
I don't think this is related to ticket #1178 ... Example: from a raw …
12:10 PM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
There is a serious bug in the fix for this that causes all users to …
9:48 AM Ticket #1180 (Quota usage viewing should be possible for standard users) created by Jari Häkkinen
Currently a user cannot see a detail view of their disk usage. The …
9:41 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) created by Jari Häkkinen

Nov 18, 2008:

2:51 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) closed by Nicklas Nordborg
fixed: Tested on backup of demo-database. * Database size: 600+600 MB. * …
12:41 PM Changeset [4648] by Nicklas Nordborg
References #1092: Add listing of child items that are the same type as …
11:35 AM Changeset [4647] by Nicklas Nordborg
Adding 'nice' to test scripts to keep the computer usable while they …
10:53 AM Changeset [4646] by Nicklas Nordborg
References #1112: Create new items with project default properties …
9:58 AM Changeset [4645] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …
8:47 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) closed by Nicklas Nordborg
duplicate: Replaced by #1178.
8:47 AM Ticket #1178 (Access a directory through file manager when not all parent ...) created by Nicklas Nordborg
See #982 for background. The file manager loads the directory tree …
8:21 AM Changeset [4644] by Nicklas Nordborg
Changes for future release 2.10
8:19 AM Changeset [4643] by Nicklas Nordborg
Forking new minor version 2.9 branch

Nov 17, 2008:

4:21 PM Changeset [4642] by Martin Svensson
Fixes #1176 Version number should be included in title
4:21 PM Ticket #1176 (Version number should be included in title) closed by Martin Svensson
fixed: (In [4642]) Fixes #1176 Version number should be included in title
4:20 PM Ticket #1177 (Building pdf documentation fails) closed by Martin Svensson
fixed: Fixed in [4641]
4:16 PM Changeset [4641] by Martin Svensson
Fixing #1177 Building pdf documentation fails
2:48 PM Changeset [4640] by Nicklas Nordborg
References #1151: Create a batch-importer version of the 'roles' test …
2:46 PM Changeset [4639] by Nicklas Nordborg
References #1149: Mark related items for removal when "parent" item is …
2:24 PM Ticket #1177 (Building pdf documentation fails) created by Nicklas Nordborg
Last part of the output: […] This is probably a side-effect of …
1:57 PM Ticket #1176 (Version number should be included in title) created by Martin Svensson
The documentation title should include which base-version the text is …
1:53 PM Ticket #1175 (Biomaterial lists) created by Nicklas Nordborg
It should be possible to group biomaterials into lists (similar to …
1:44 PM Milestone BASE 2.8.5 completed
2.8.4 was the last 2.8-related release.
1:42 PM Ticket #966 (Registered and possibly last updated – add to all/most items) closed by Nicklas Nordborg
duplicate: #1166 implements the 'creation date' part and #108 is for the rest.
1:39 PM Ticket #1174 (Show creation date for items in web interface) created by Nicklas Nordborg
#1166 added support for storing dates to the core. We need to modify …
1:32 PM Ticket #1173 (Make it visually clear when no project is active) created by Nicklas Nordborg
Currently, it is possible to see which project that is active in the …
1:27 PM Ticket #1172 (Make it visually clear when a filter is active.) created by Nicklas Nordborg
The current implementation of the various lists in the web interface …
1:22 PM Ticket #1171 (Add BioLIMS support to batch importers) created by Nicklas Nordborg
The batch importers that works with biomaterial items …
1:02 PM Changeset [4638] by Nicklas Nordborg
Fixes #1170: Move old update warnings to an appendix
1:02 PM Ticket #1170 (Move old update warnings to an appendix) closed by Nicklas Nordborg
fixed: (In [4638]) Fixes #1170: Move old update warnings to an appendix
11:38 AM Changeset [4637] by Nicklas Nordborg
Fixes #1168: Require UTF-8 to be used as database character set
11:38 AM Ticket #1168 (Require UTF-8 to be used as database character set) closed by Nicklas Nordborg
fixed: (In [4637]) Fixes #1168: Require UTF-8 to be used as database character set
11:29 AM Ticket #1170 (Move old update warnings to an appendix) created by Nicklas Nordborg
The update documentation starts with lots of warnings with important …
9:35 AM Changeset [4636] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …

Nov 12, 2008:

12:19 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) created by Nicklas Nordborg
See #1168 for background info. The script provided with the BASE …
11:45 AM Ticket #1168 (Require UTF-8 to be used as database character set) created by Nicklas Nordborg
A side effect of #792 is that we must be able to store non-latin1 …

Nov 11, 2008:

12:08 PM Changeset [4635] by Nicklas Nordborg
References #792: Add support for units to annotation values Use the …
7:51 AM Changeset [4634] by Nicklas Nordborg
References #792: Add support for units to annotation values Use the …

Nov 10, 2008:

4:35 PM Changeset [4633] by Martin Svensson
Fixes #1151 User role-test can now test batch importers. Documentation …
4:35 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by Martin Svensson
fixed: (In [4633]) Fixes #1151 User role-test can now test batch importers. …

Nov 7, 2008:

2:46 PM Changeset [4632] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes a …
12:06 PM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) closed by Nicklas Nordborg
fixed: (In [4631]) Fixes #1167: Base1PluginExecutor should handle …
12:06 PM Changeset [4631] by Nicklas Nordborg
Fixes #1167: Base1PluginExecutor should handle reporter-id=0 as null …
11:15 AM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) created by Nicklas Nordborg
There is a problem with some BASE1 plug-ins when a bioassay set has …
9:38 AM Ticket #792 (Add support for units to annotation values) closed by Nicklas Nordborg
fixed: Seems to be working ok.
9:36 AM Changeset [4630] by Nicklas Nordborg
Fixes #1133: Experimental factors - inherit annotations
9:36 AM Ticket #1133 (Experimental factors - inherit annotations) closed by Nicklas Nordborg
fixed: (In [4630]) Fixes #1133: Experimental factors - inherit annotations
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