Timeline
Nov 28, 2008:
- 1:38 PM Changeset [4676] by
- References #1196: BASE is trying to set a cookie when editing an …
- 1:35 PM Changeset [4675] by
- Fixes #1196: BASE is trying to set a cookie when editing an …
- 1:35 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) closed by
- fixed: (In [4675]) Fixes #1196: BASE is trying to set a cookie when editing …
- 1:01 PM Changeset [4674] by
- Fixes #1172: Make it visually clear when a filter is active.
- 1:01 PM Ticket #1172 (Make it visually clear when a filter is active.) closed by
- fixed: (In [4674]) Fixes #1172: Make it visually clear when a filter is active.
- 12:52 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) closed by
- invalid: Plese report this error on the BASE plugins site: …
- 12:51 PM Ticket #1197 (Plugin running time unexpected output while executing) closed by
- invalid: This is a server configuration issue. Eg. The job agent has a …
- 12:47 PM Ticket #1198 (Error: The query has already been executed (Illumina detection P-value ...) created by
- When trying to run plugin 'Illumina detection P-value calculation' I …
- 12:11 PM Ticket #1197 (Plugin running time unexpected output while executing) created by
- When running a plugin (Illumina package) the running time reads +6h …
- 11:16 AM Changeset [4673] by
- Fixes #1186: Column display size should not become too large in …
- 11:16 AM Ticket #1186 (Column display size should not become too large in listings) closed by
- fixed: (In [4673]) Fixes #1186: Column display size should not become too …
Nov 27, 2008:
- 10:29 PM Ticket #1196 (BASE is trying to set a cookie when editing an annotations) created by
- 1. Create a new item that supports annotations, for example a …
- 4:39 PM Changeset [4672] by
- References #979 Missed some files in the last commit.
- 4:33 PM Changeset [4671] by
- References #979 Added keyword to svn-properties
- 4:24 PM Changeset [4670] by
- References #979 Added data- and item classes needed by BioMaterial? …
- 4:23 PM Ticket #1195 (Problem when importing negative values for annotations with float as ...) created by
- I tried to annotate a number of my extracts using the annotation …
- 3:58 PM Ticket #1194 (A missing raw data type breaks experiment and raw bioassay views) created by
- Sorting and Filtering in the Experiments List View is not working at …
Nov 26, 2008:
- 12:06 PM Milestone BASE 2.9 completed
- 12:05 PM Changeset [4669] by
- Merged 2.9-stable@4643:4666 to trunk.
- 11:45 AM DownloadPage edited by
- Releasing 2.9.0 (diff)
- 11:30 AM Changeset [4668] by
- Changes for future release 2.9.1
- 11:14 AM Changeset [4667] by
- Tagging version 2.9
- 11:13 AM Changeset [4666] by
- Preparing release 2.9
Nov 25, 2008:
- 11:42 AM Changeset [4665] by
- Updated current BASE team.
Nov 24, 2008:
- 2:49 PM Changeset [4664] by
- Stylesheet is now included in doc/historical/ when running ant dist.
- 2:13 PM Historical edited by
- Changed links to historical documents (diff)
- 11:39 AM Changeset [4663] by
- References #1175: Biomaterial lists Added BioMaterialList? to UML diagram
- 9:25 AM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by
- fixed: The file has been added to the test-data repository.
- 9:17 AM Ticket #1193 (Generic tree-like item overview) created by
- Implement a function that is similar to the "Experiment overview" that …
- 9:03 AM Ticket #1192 (Use biomaterial lists as filters) created by
- This depends on #1175. On any given list page with biomaterials …
- 8:59 AM Ticket #1191 (Biomaterial lists manager API and interface) created by
- This depends on #1175. Add support for merging and manipulating …
- 8:56 AM Ticket #1190 (API and interface for creating biomaterial lists) created by
- This depends on #1175. In the web interface it should be possible to …
- 8:34 AM Changeset [4662] by
- Fixes #1181: No navigation path to enclosing directory on single file …
- 8:34 AM Ticket #1181 (No navigation path to enclosing directory on single file view page) closed by
- fixed: (In [4662]) Fixes #1181: No navigation path to enclosing directory on …
Nov 21, 2008:
- 8:37 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) reopened by
- The 'rawbioassay_out.txt' file is missing in the repository. Running …
- 2:33 PM Changeset [4661] by
- Fixes #1183: Filtering on file size does not accept units Also fixed …
- 2:33 PM Ticket #1183 (Filtering on file size does not accept units) closed by
- fixed: (In [4661]) Fixes #1183: Filtering on file size does not accept units …
- 1:02 PM Changeset [4660] by
- Fixes #1189: Can't import annotation to raw bioassays
- 1:02 PM Ticket #1189 (Can't import annotation to raw bioassays) closed by
- fixed: (In [4660]) Fixes #1189: Can't import annotation to raw bioassays
- 12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) created by
- Start a job configuration with the Annotation importer on the 'Raw …
- 10:31 AM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) closed by
- fixed: (In [4659]) Fixes #1160.
- 10:31 AM Changeset [4659] by
- Fixes #1160.
- 10:25 AM Ticket #1188 (Create a super batch importer?) created by
- With the new really nice batch importers available a natural idea …
- 10:19 AM Ticket #1187 (Can batch importers be made smart enough to import data to several ...) created by
- The use case we would like to support is that the laboratory staff …
- 10:05 AM Ticket #1186 (Column display size should not become too large in listings) created by
- In many cases the table listings are hampered by too much information …
- 9:47 AM Changeset [4658] by
- References #979: Biomaterial LIMS Added BioLIMS to UML diagram.
- 9:21 AM Ticket #1185 (Manual transform creator) created by
- Normally all transforms are created by plug-ins in BASE. However, many …
- 9:16 AM Ticket #1184 (Default project sharing level should be setable) created by
- Currently the sharing level is set but the setting used in the …
- 9:13 AM Ticket #1183 (Filtering on file size does not accept units) created by
- It would be nice to be able to filter on file size using units like kB …
- 9:06 AM Ticket #727 (Add presentations and publications to the wiki) closed by
- wontfix
- 9:04 AM Changeset [4657] by
- Fixing typo.
Nov 20, 2008:
- 1:36 PM Changeset [4656] by
- References #792: Add support for units to annotation values Test …
- 1:15 PM Changeset [4655] by
- References #1145 and #1151. Added instructions in the documentation …
- 1:13 PM Changeset [4654] by
- References #1145: Make the generic raw data importer support batch …
- 12:42 PM Changeset [4653] by
- References #1145: Make the generic raw data importer support batch …
- 12:05 PM Changeset [4652] by
- References #1133: Experimental factors - inherit annotations Changed …
- 11:59 AM Changeset [4651] by
- References #1133: Experimental factors - inherit annotations Closing …
Nov 19, 2008:
- 11:13 PM Ticket #1182 (Groups with hidden members) created by
- Two different types of group in BASe would be useful. Actually there …
- 4:27 PM Changeset [4650] by
- References #792: Add support for units to annotation values Fixed …
- 2:46 PM Changeset [4649] by
- Fixes #1112: Create new items with project default properties from …
- 2:46 PM Ticket #1112 (Create new items with project default properties from active project) closed by
- fixed: (In [4649]) Fixes #1112: Create new items with project default …
- 12:17 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) created by
- I don't think this is related to ticket #1178 ... Example: from a raw …
- 12:10 PM Ticket #1112 (Create new items with project default properties from active project) reopened by
- There is a serious bug in the fix for this that causes all users to …
- 9:48 AM Ticket #1180 (Quota usage viewing should be possible for standard users) created by
- Currently a user cannot see a detail view of their disk usage. The …
- 9:41 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) created by
Nov 18, 2008:
- 2:51 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) closed by
- fixed: Tested on backup of demo-database. * Database size: 600+600 MB. * …
- 12:41 PM Changeset [4648] by
- References #1092: Add listing of child items that are the same type as …
- 11:35 AM Changeset [4647] by
- Adding 'nice' to test scripts to keep the computer usable while they …
- 10:53 AM Changeset [4646] by
- References #1112: Create new items with project default properties …
- 9:58 AM Changeset [4645] by
- References #1169: Create a function that changes an existing BASE …
- 8:47 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) closed by
- duplicate: Replaced by #1178.
- 8:47 AM Ticket #1178 (Access a directory through file manager when not all parent ...) created by
- See #982 for background. The file manager loads the directory tree …
- 8:21 AM Changeset [4644] by
- Changes for future release 2.10
- 8:19 AM Changeset [4643] by
- Forking new minor version 2.9 branch
Nov 17, 2008:
- 4:21 PM Changeset [4642] by
- Fixes #1176 Version number should be included in title
- 4:21 PM Ticket #1176 (Version number should be included in title) closed by
- fixed: (In [4642]) Fixes #1176 Version number should be included in title
- 4:20 PM Ticket #1177 (Building pdf documentation fails) closed by
- fixed: Fixed in [4641]
- 4:16 PM Changeset [4641] by
- Fixing #1177 Building pdf documentation fails
- 2:48 PM Changeset [4640] by
- References #1151: Create a batch-importer version of the 'roles' test …
- 2:46 PM Changeset [4639] by
- References #1149: Mark related items for removal when "parent" item is …
- 2:24 PM Ticket #1177 (Building pdf documentation fails) created by
- Last part of the output: […] This is probably a side-effect of …
- 1:57 PM Ticket #1176 (Version number should be included in title) created by
- The documentation title should include which base-version the text is …
- 1:53 PM Ticket #1175 (Biomaterial lists) created by
- It should be possible to group biomaterials into lists (similar to …
- 1:44 PM Milestone BASE 2.8.5 completed
- 2.8.4 was the last 2.8-related release.
- 1:42 PM Ticket #966 (Registered and possibly last updated – add to all/most items) closed by
- duplicate: #1166 implements the 'creation date' part and #108 is for the rest.
- 1:39 PM Ticket #1174 (Show creation date for items in web interface) created by
- #1166 added support for storing dates to the core. We need to modify …
- 1:32 PM Ticket #1173 (Make it visually clear when no project is active) created by
- Currently, it is possible to see which project that is active in the …
- 1:27 PM Ticket #1172 (Make it visually clear when a filter is active.) created by
- The current implementation of the various lists in the web interface …
- 1:22 PM Ticket #1171 (Add BioLIMS support to batch importers) created by
- The batch importers that works with biomaterial items …
- 1:02 PM Changeset [4638] by
- Fixes #1170: Move old update warnings to an appendix
- 1:02 PM Ticket #1170 (Move old update warnings to an appendix) closed by
- fixed: (In [4638]) Fixes #1170: Move old update warnings to an appendix
- 11:38 AM Changeset [4637] by
- Fixes #1168: Require UTF-8 to be used as database character set
- 11:38 AM Ticket #1168 (Require UTF-8 to be used as database character set) closed by
- fixed: (In [4637]) Fixes #1168: Require UTF-8 to be used as database character set
- 11:29 AM Ticket #1170 (Move old update warnings to an appendix) created by
- The update documentation starts with lots of warnings with important …
- 9:35 AM Changeset [4636] by
- References #1169: Create a function that changes an existing BASE …
Nov 12, 2008:
- 12:19 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) created by
- See #1168 for background info. The script provided with the BASE …
- 11:45 AM Ticket #1168 (Require UTF-8 to be used as database character set) created by
- A side effect of #792 is that we must be able to store non-latin1 …
Nov 11, 2008:
- 12:08 PM Changeset [4635] by
- References #792: Add support for units to annotation values Use the …
- 7:51 AM Changeset [4634] by
- References #792: Add support for units to annotation values Use the …
Nov 10, 2008:
- 4:35 PM Changeset [4633] by
- Fixes #1151 User role-test can now test batch importers. Documentation …
- 4:35 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by
- fixed: (In [4633]) Fixes #1151 User role-test can now test batch importers. …
Nov 7, 2008:
- 2:46 PM Changeset [4632] by
- References #792: Add support for units to annotation values Fixes a …
- 12:06 PM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) closed by
- fixed: (In [4631]) Fixes #1167: Base1PluginExecutor should handle …
- 12:06 PM Changeset [4631] by
- Fixes #1167: Base1PluginExecutor should handle reporter-id=0 as null …
- 11:15 AM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) created by
- There is a problem with some BASE1 plug-ins when a bioassay set has …
- 9:38 AM Ticket #792 (Add support for units to annotation values) closed by
- fixed: Seems to be working ok.
- 9:36 AM Changeset [4630] by
- Fixes #1133: Experimental factors - inherit annotations
- 9:36 AM Ticket #1133 (Experimental factors - inherit annotations) closed by
- fixed: (In [4630]) Fixes #1133: Experimental factors - inherit annotations
Nov 6, 2008:
- 9:26 AM Changeset [4629] by
- References #1162: Raw bioassay importer fails with …
Nov 5, 2008:
- 4:43 PM Changeset [4628] by
- References #1151 Refactored to better use the existing code in the …
- 12:06 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) closed by
- wontfix: Well.... this is maybe not so useful after all. It is simple to just …
- 12:02 PM Ticket #1139 (Display the barcode for array slide in the hybridization information page) closed by
- fixed: (In [4627]) Fixes #1139: Display the barcode for array slide in the …
- 12:02 PM Changeset [4627] by
- Fixes #1139: Display the barcode for array slide in the hybridization …
- 10:56 AM Changeset [4626] by
- Fixes #1164: Reporter importer plug-in displays 'Reporter ID' when …
- 10:56 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) closed by
- fixed: (In [4626]) Fixes #1164: Reporter importer plug-in displays 'Reporter …
Nov 4, 2008:
- 4:45 PM Changeset [4625] by
- References #1151 Created new classes which do the power user-role test …
- 2:56 PM Changeset [4624] by
- Fixes #1155: Automatic plug-in registration wizard should group …
- 2:56 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) closed by
- fixed: (In [4624]) Fixes #1155: Automatic plug-in registration wizard should …
- 11:26 AM Ticket #1166 (Store creation date for items) created by
- Replaces ticket:966 This ticket is about support in the core …
- 10:41 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) closed by
- worksforme: This can be done in the configuration settings. Just enter the desired …
- 10:34 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) created by
- When using plugin: Reporter map importer. I have a reporter map with …
- 10:15 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) created by
- In reporter listings there is no 'Reporter ID' column and it takes …
Nov 3, 2008:
- 9:32 AM Changeset [4623] by
- Fixes #1163: Set name of child bioassay when there is only one parent
- 9:32 AM Ticket #1163 (Set name of child bioassay when there is only one parent) closed by
- fixed: (In [4623]) Fixes #1163: Set name of child bioassay when there is only …
- 9:22 AM Ticket #1163 (Set name of child bioassay when there is only one parent) created by
- Currently, the BioAssaySet?.newBioAssay(BioAssay?) copies the name of …
Oct 31, 2008:
- 11:00 AM Changeset [4622] by
- Fixes #1162: Raw bioassay importer fails with …
- 11:00 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) closed by
- fixed: (In [4622]) Fixes #1162: Raw bioassay importer fails with …
- 10:57 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) created by
- The error message should be an ItemNotFoundException? instead so users …
- 10:51 AM Changeset [4621] by
- Fixes #1158: Improving plugin autodetection
- 10:51 AM Ticket #1158 (Improving plugin autodetection) closed by
- fixed: (In [4621]) Fixes #1158: Improving plugin autodetection
- 9:54 AM Ticket #394 (Make it possible to export and properly query values in components) closed by
- fixed: (In [4620]) Fixes #394: Make it possible to export and properly query …
- 9:54 AM Changeset [4620] by
- Fixes #394: Make it possible to export and properly query values in …
Oct 30, 2008:
- 2:35 PM Changeset [4619] by
- References #1129: Filtering of child/parent items in table listing …
- 11:41 AM Changeset [4618] by
- Fixes #1161: Improve error handling in the extension system
- 11:41 AM Ticket #1161 (Improve error handling in the extension system) closed by
- fixed: (In [4618]) Fixes #1161: Improve error handling in the extension system
- 8:19 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) closed by
- fixed: (In [4617]) Fixes #1149 Mark related items for removal when "parent" …
- 8:19 AM Changeset [4617] by
- Fixes #1149 Mark related items for removal when "parent" item is …
Oct 29, 2008:
- 12:11 PM Ticket #1161 (Improve error handling in the extension system) created by
- The problem is that while an extension may be successfully installed …
- 11:21 AM Changeset [4616] by
- Typo
- 9:59 AM Changeset [4615] by
- References #1159: Annotation importer should detect non-existing …
- 9:58 AM Changeset [4614] by
- Fixes #1159: Annotation importer should detect non-existing column mappings
- 9:58 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) closed by
- fixed: (In [4614]) Fixes #1159: Annotation importer should detect …
- 9:23 AM Ticket #1129 (Filtering of child/parent items in table listing) closed by
- fixed: (In [4613]) Fixes #1129: Filtering of child/parent items in table …
- 9:23 AM Changeset [4613] by
- Fixes #1129: Filtering of child/parent items in table listing …
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