Timeline



Nov 21, 2008:

8:37 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) reopened by Nicklas Nordborg
The 'rawbioassay_out.txt' file is missing in the repository. Running …
2:33 PM Changeset [4661] by Nicklas Nordborg
Fixes #1183: Filtering on file size does not accept units Also fixed …
2:33 PM Ticket #1183 (Filtering on file size does not accept units) closed by Nicklas Nordborg
fixed: (In [4661]) Fixes #1183: Filtering on file size does not accept units …
1:35 PM Ticket #1186 (Column display size should not become too large in listings) updated by Nicklas Nordborg
I made some tests with this some time ago. It is rather easy to …
1:20 PM Ticket #1178 (Access a directory through file manager when not all parent ...) updated by Martin Svensson
Summary changed
1:20 PM Ticket #1184 (Default project sharing level should be setable) updated by Nicklas Nordborg
Component, Milestone changed
It should be possible to add this as a property on the project. It …
1:13 PM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
Milestone, Priority changed
It should be possible to link from the overview information on 'Home' …
1:10 PM Ticket #1183 (Filtering on file size does not accept units) updated by Nicklas Nordborg
Priority, Status, Milestone, Owner, Summary changed
File sizes was never added as a units, but it should not be hard to …
1:02 PM Changeset [4660] by Nicklas Nordborg
Fixes #1189: Can't import annotation to raw bioassays
1:02 PM Ticket #1189 (Can't import annotation to raw bioassays) closed by Nicklas Nordborg
fixed: (In [4660]) Fixes #1189: Can't import annotation to raw bioassays
12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) updated by Nicklas Nordborg
Owner, Status changed
12:58 PM Ticket #1189 (Can't import annotation to raw bioassays) created by Nicklas Nordborg
Start a job configuration with the Annotation importer on the 'Raw …
11:45 AM Ticket #522 (Write "Why use BASE" section) updated by Jari Häkkinen
Milestone changed
10:31 AM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) closed by Jari Häkkinen
fixed: (In [4659]) Fixes #1160.
10:31 AM Changeset [4659] by Jari Häkkinen
Fixes #1160.
10:25 AM Ticket #1188 (Create a super batch importer?) created by Jari Häkkinen
With the new really nice batch importers available a natural idea …
10:19 AM Ticket #1187 (Can batch importers be made smart enough to import data to several ...) created by Jari Häkkinen
The use case we would like to support is that the laboratory staff …
10:05 AM Ticket #1186 (Column display size should not become too large in listings) created by Jari Häkkinen
In many cases the table listings are hampered by too much information …
9:51 AM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
Summary, Description changed
9:47 AM Changeset [4658] by Nicklas Nordborg
References #979: Biomaterial LIMS Added BioLIMS to UML diagram.
9:47 AM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
(In [4658]) References #979: Biomaterial LIMS Added BioLIMS to UML …
9:21 AM Ticket #1185 (Manual transform creator) created by Jari Häkkinen
Normally all transforms are created by plug-ins in BASE. However, many …
9:16 AM Ticket #1184 (Default project sharing level should be setable) created by Jari Häkkinen
Currently the sharing level is set but the setting used in the …
9:13 AM Ticket #1183 (Filtering on file size does not accept units) created by Jari Häkkinen
It would be nice to be able to filter on file size using units like kB …
9:06 AM Ticket #727 (Add presentations and publications to the wiki) closed by Jari Häkkinen
wontfix
9:04 AM Changeset [4657] by Jari Häkkinen
Fixing typo.

Nov 20, 2008:

1:36 PM Changeset [4656] by Nicklas Nordborg
References #792: Add support for units to annotation values Test …
1:36 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4656]) References #792: Add support for units to annotation …
1:15 PM Changeset [4655] by Nicklas Nordborg
References #1145 and #1151. Added instructions in the documentation …
1:15 PM Tickets #1145,​1151 batch updated by Nicklas Nordborg
(In [4655]) References #1145 and #1151. Added instructions in the …
1:13 PM Changeset [4654] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
1:13 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4654]) References #1145: Make the generic raw data importer …
12:42 PM Changeset [4653] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
12:42 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4653]) References #1145: Make the generic raw data importer …
12:05 PM Changeset [4652] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Changed …
12:05 PM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
(In [4652]) References #1133: Experimental factors - inherit …
11:59 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
(In [4651]) References #1133: Experimental factors - inherit …
11:59 AM Changeset [4651] by Nicklas Nordborg
References #1133: Experimental factors - inherit annotations Closing …
8:22 AM Ticket #1182 (Groups with hidden members) updated by Nicklas Nordborg
Milestone changed
The EVERYONE groups is very special indeed, because no user is …

Nov 19, 2008:

11:13 PM Ticket #1182 (Groups with hidden members) created by Jari Häkkinen
Two different types of group in BASe would be useful. Actually there …
10:49 PM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Jari Häkkinen
Yes but ... Of course the permission allows the user to accomplish …
4:36 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) updated by Nicklas Nordborg
No, this is not the same as #1178. Yes, I think the fix is easy. …
4:27 PM Changeset [4650] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixed …
4:27 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4650]) References #792: Add support for units to annotation …
2:46 PM Changeset [4649] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
2:46 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4649]) Fixes #1112: Create new items with project default …
1:04 PM Ticket #1171 (Add BioLIMS support to batch importers) updated by Johan Vallon-Christersson
Description changed
12:24 PM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
> It is also be possible for any user to go to Administrate -> …
12:17 PM Ticket #1181 (No navigation path to enclosing directory on single file view page) created by base
I don't think this is related to ticket #1178 ... Example: from a raw …
12:10 PM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status changed
12:10 PM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status changed
12:10 PM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
There is a serious bug in the fix for this that causes all users to …
11:27 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Jari Häkkinen
Replying to nicklas: > A possible workaround if things …
11:27 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
It is also be possible for any user to go to Administrate -> User, …
11:22 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Jari Häkkinen
Summary changed
11:22 AM Ticket #1180 (Quota usage viewing should be possible for standard users) updated by Nicklas Nordborg
The permission you are looking for is "Disk usage". This is the 10th …
11:18 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) updated by Nicklas Nordborg
A workaround is to create a project or an item that it is possible to …
9:48 AM Ticket #1180 (Quota usage viewing should be possible for standard users) created by Jari Häkkinen
Currently a user cannot see a detail view of their disk usage. The …
9:41 AM Ticket #1179 (A user should be able to see which groups he is a part of without any ...) created by Jari Häkkinen

Nov 18, 2008:

6:54 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
A possible workaround if things have been done in the wrong order is …
6:04 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
The utf8 fix must be executed against a 2.8 database BEFORE …
4:41 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Jari Häkkinen
Replying to nicklas: > (In [4636]) References #1169: …
2:51 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) closed by Nicklas Nordborg
fixed: Tested on backup of demo-database. * Database size: 600+600 MB. * …
12:41 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Nicklas Nordborg
(In [4648]) References #1092: Add listing of child items that are the …
12:41 PM Changeset [4648] by Nicklas Nordborg
References #1092: Add listing of child items that are the same type as …
11:35 AM Changeset [4647] by Nicklas Nordborg
Adding 'nice' to test scripts to keep the computer usable while they …
10:53 AM Changeset [4646] by Nicklas Nordborg
References #1112: Create new items with project default properties …
10:53 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
(In [4646]) References #1112: Create new items with project default …
9:58 AM Changeset [4645] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …
9:58 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
(In [4645]) References #1169: Create a function that changes an …
8:47 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) closed by Nicklas Nordborg
duplicate: Replaced by #1178.
8:47 AM Ticket #1178 (Access a directory through file manager when not all parent ...) created by Nicklas Nordborg
See #982 for background. The file manager loads the directory tree …
8:21 AM Changeset [4644] by Nicklas Nordborg
Changes for future release 2.10
8:19 AM Changeset [4643] by Nicklas Nordborg
Forking new minor version 2.9 branch

Nov 17, 2008:

4:21 PM Changeset [4642] by Martin Svensson
Fixes #1176 Version number should be included in title
4:21 PM Ticket #1176 (Version number should be included in title) closed by Martin Svensson
fixed: (In [4642]) Fixes #1176 Version number should be included in title
4:20 PM Ticket #1177 (Building pdf documentation fails) closed by Martin Svensson
fixed: Fixed in [4641]
4:16 PM Changeset [4641] by Martin Svensson
Fixing #1177 Building pdf documentation fails
3:42 PM Ticket #1177 (Building pdf documentation fails) updated by Martin Svensson
Status, Owner changed
3:41 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Nicklas Nordborg
Milestone changed
It is a limitation in the web client. It loads directories top-down …
3:35 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Replying to nicklas: > Are all directories on the path …
2:48 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Nicklas Nordborg
(In [4640]) References #1151: Create a batch-importer version of the …
2:48 PM Changeset [4640] by Nicklas Nordborg
References #1151: Create a batch-importer version of the 'roles' test …
2:46 PM Changeset [4639] by Nicklas Nordborg
References #1149: Mark related items for removal when "parent" item is …
2:46 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Nicklas Nordborg
(In [4639]) References #1149: Mark related items for removal when …
2:25 PM Ticket #1176 (Version number should be included in title) updated by Martin Svensson
Status changed
2:24 PM Ticket #1177 (Building pdf documentation fails) created by Nicklas Nordborg
Last part of the output: […] This is probably a side-effect of …
1:57 PM Ticket #1176 (Version number should be included in title) created by Martin Svensson
The documentation title should include which base-version the text is …
1:53 PM Ticket #1175 (Biomaterial lists) created by Nicklas Nordborg
It should be possible to group biomaterials into lists (similar to …
1:44 PM Milestone BASE 2.8.5 completed
2.8.4 was the last 2.8-related release.
1:42 PM Ticket #966 (Registered and possibly last updated – add to all/most items) closed by Nicklas Nordborg
duplicate: #1166 implements the 'creation date' part and #108 is for the rest.
1:40 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Description changed
1:39 PM Ticket #1174 (Show creation date for items in web interface) created by Nicklas Nordborg
#1166 added support for storing dates to the core. We need to modify …
1:37 PM Ticket #1166 (Store creation date for items) updated by Nicklas Nordborg
Milestone, Summary changed
1:32 PM Ticket #1173 (Make it visually clear when no project is active) created by Nicklas Nordborg
Currently, it is possible to see which project that is active in the …
1:27 PM Ticket #1172 (Make it visually clear when a filter is active.) created by Nicklas Nordborg
The current implementation of the various lists in the web interface …
1:22 PM Ticket #1171 (Add BioLIMS support to batch importers) created by Nicklas Nordborg
The batch importers that works with biomaterial items …
1:18 PM Ticket #979 (Biomaterial LIMS) updated by Nicklas Nordborg
Description, Milestone changed
1:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Nicklas Nordborg
Are all directories on the path shared to UserB? The directory tree …
1:02 PM Changeset [4638] by Nicklas Nordborg
Fixes #1170: Move old update warnings to an appendix
1:02 PM Ticket #1170 (Move old update warnings to an appendix) closed by Nicklas Nordborg
fixed: (In [4638]) Fixes #1170: Move old update warnings to an appendix
11:38 AM Changeset [4637] by Nicklas Nordborg
Fixes #1168: Require UTF-8 to be used as database character set
11:38 AM Ticket #1168 (Require UTF-8 to be used as database character set) closed by Nicklas Nordborg
fixed: (In [4637]) Fixes #1168: Require UTF-8 to be used as database character set
11:29 AM Ticket #1170 (Move old update warnings to an appendix) created by Nicklas Nordborg
The update documentation starts with lots of warnings with important …
9:35 AM Changeset [4636] by Nicklas Nordborg
References #1169: Create a function that changes an existing BASE …
9:35 AM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
(In [4636]) References #1169: Create a function that changes an …

Nov 14, 2008:

4:47 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Johan Vallon-Christersson
Milestone changed
4:47 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Johan Vallon-Christersson
Owner changed
4:45 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Johan Vallon-Christersson
Replying to johan: Have tested in 2.8.4 without …

Nov 12, 2008:

12:53 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) updated by Nicklas Nordborg
Status, Owner changed
12:53 PM Ticket #1168 (Require UTF-8 to be used as database character set) updated by Nicklas Nordborg
Status, Owner, Description changed
12:19 PM Ticket #1169 (Create a function that changes an existing BASE database to use UTF-8) created by Nicklas Nordborg
See #1168 for background info. The script provided with the BASE …
11:45 AM Ticket #1168 (Require UTF-8 to be used as database character set) created by Nicklas Nordborg
A side effect of #792 is that we must be able to store non-latin1 …

Nov 11, 2008:

12:08 PM Changeset [4635] by Nicklas Nordborg
References #792: Add support for units to annotation values Use the …
12:08 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4635]) References #792: Add support for units to annotation …
7:51 AM Changeset [4634] by Nicklas Nordborg
References #792: Add support for units to annotation values Use the …
7:51 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4634]) References #792: Add support for units to annotation …

Nov 10, 2008:

4:35 PM Changeset [4633] by Martin Svensson
Fixes #1151 User role-test can now test batch importers. Documentation …
4:35 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) closed by Martin Svensson
fixed: (In [4633]) Fixes #1151 User role-test can now test batch importers. …

Nov 7, 2008:

2:46 PM Changeset [4632] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes a …
2:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4632]) References #792: Add support for units to annotation …
12:06 PM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) closed by Nicklas Nordborg
fixed: (In [4631]) Fixes #1167: Base1PluginExecutor should handle …
12:06 PM Changeset [4631] by Nicklas Nordborg
Fixes #1167: Base1PluginExecutor should handle reporter-id=0 as null …
11:15 AM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) updated by Nicklas Nordborg
Status, Owner changed
11:15 AM Ticket #1167 (Base1PluginExecutor should handle reporter-id=0 as null in some cases) created by Nicklas Nordborg
There is a problem with some BASE1 plug-ins when a bioassay set has …
9:38 AM Ticket #792 (Add support for units to annotation values) closed by Nicklas Nordborg
fixed: Seems to be working ok.
9:36 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
Milestone, Component, Priority changed
9:36 AM Changeset [4630] by Nicklas Nordborg
Fixes #1133: Experimental factors - inherit annotations
9:36 AM Ticket #1133 (Experimental factors - inherit annotations) closed by Nicklas Nordborg
fixed: (In [4630]) Fixes #1133: Experimental factors - inherit annotations

Nov 6, 2008:

12:56 PM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
Duplicates needs to be manually removed.
12:56 PM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
Status, Owner changed
I'll have a go at this. I am thinking of something like a "Auto …
9:26 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) updated by Nicklas Nordborg
(In [4629]) References #1162: Raw bioassay importer fails with …
9:26 AM Changeset [4629] by Nicklas Nordborg
References #1162: Raw bioassay importer fails with …

Nov 5, 2008:

4:43 PM Changeset [4628] by Martin Svensson
References #1151 Refactored to better use the existing code in the …
4:43 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Martin Svensson
(In [4628]) References #1151 Refactored to better use the existing …
12:06 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) closed by Nicklas Nordborg
wontfix: Well.... this is maybe not so useful after all. It is simple to just …
12:03 PM Ticket #1139 (Display the barcode for array slide in the hybridization information page) updated by Nicklas Nordborg
Milestone changed
12:02 PM Ticket #1139 (Display the barcode for array slide in the hybridization information page) closed by Nicklas Nordborg
fixed: (In [4627]) Fixes #1139: Display the barcode for array slide in the …
12:02 PM Changeset [4627] by Nicklas Nordborg
Fixes #1139: Display the barcode for array slide in the hybridization …
10:56 AM Changeset [4626] by Nicklas Nordborg
Fixes #1164: Reporter importer plug-in displays 'Reporter ID' when …
10:56 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) closed by Nicklas Nordborg
fixed: (In [4626]) Fixes #1164: Reporter importer plug-in displays 'Reporter …

Nov 4, 2008:

4:45 PM Changeset [4625] by Martin Svensson
References #1151 Created new classes which do the power user-role test …
4:45 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Martin Svensson
(In [4625]) References #1151 Created new classes which do the power …
2:59 PM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) updated by Nicklas Nordborg
Status, Owner changed
2:56 PM Changeset [4624] by Nicklas Nordborg
Fixes #1155: Automatic plug-in registration wizard should group …
2:56 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) closed by Nicklas Nordborg
fixed: (In [4624]) Fixes #1155: Automatic plug-in registration wizard should …
11:29 AM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Johan Vallon-Christersson
List of items that would benefit from having registered as a property …
11:26 AM Ticket #1166 (Store creation date for items) created by Johan Vallon-Christersson
Replaces ticket:966 This ticket is about support in the core …
11:19 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) updated by Nicklas Nordborg
I came to think about that it is not a good idea to set the block …
11:14 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) updated by Jari Häkkinen
Replying to nicklas: > This can be done in the …
10:45 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) updated by Nicklas Nordborg
Milestone, Priority changed
This is on line 131 in ReporterFlatFileImporter: …
10:41 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) closed by Nicklas Nordborg
worksforme: This can be done in the configuration settings. Just enter the desired …
10:34 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) created by Johan Vallon-Christersson
When using plugin: Reporter map importer. I have a reporter map with …
10:15 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) created by Jari Häkkinen
In reporter listings there is no 'Reporter ID' column and it takes …

Nov 3, 2008:

11:27 AM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) updated by Nicklas Nordborg
Status, Milestone, Owner changed
9:32 AM Changeset [4623] by Nicklas Nordborg
Fixes #1163: Set name of child bioassay when there is only one parent
9:32 AM Ticket #1163 (Set name of child bioassay when there is only one parent) closed by Nicklas Nordborg
fixed: (In [4623]) Fixes #1163: Set name of child bioassay when there is only …
9:22 AM Ticket #1163 (Set name of child bioassay when there is only one parent) updated by Nicklas Nordborg
Owner, Status changed
9:22 AM Ticket #1163 (Set name of child bioassay when there is only one parent) created by Nicklas Nordborg
Currently, the BioAssaySet.newBioAssay(BioAssay) copies the name of …

Oct 31, 2008:

11:00 AM Changeset [4622] by Nicklas Nordborg
Fixes #1162: Raw bioassay importer fails with …
11:00 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) closed by Nicklas Nordborg
fixed: (In [4622]) Fixes #1162: Raw bioassay importer fails with …
10:58 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) updated by Nicklas Nordborg
Status, Owner changed
10:57 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) created by Nicklas Nordborg
The error message should be an ItemNotFoundException instead so users …
10:51 AM Changeset [4621] by Nicklas Nordborg
Fixes #1158: Improving plugin autodetection
10:51 AM Ticket #1158 (Improving plugin autodetection) closed by Nicklas Nordborg
fixed: (In [4621]) Fixes #1158: Improving plugin autodetection
10:47 AM Ticket #1158 (Improving plugin autodetection) updated by Nicklas Nordborg
Milestone, Status, Owner changed
In other words... * If there is only one configuration for a …
9:54 AM Ticket #394 (Make it possible to export and properly query values in components) updated by Nicklas Nordborg
Milestone changed
9:54 AM Ticket #394 (Make it possible to export and properly query values in components) closed by Nicklas Nordborg
fixed: (In [4620]) Fixes #394: Make it possible to export and properly query …
9:54 AM Changeset [4620] by Nicklas Nordborg
Fixes #394: Make it possible to export and properly query values in …

Oct 30, 2008:

2:35 PM Changeset [4619] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
2:35 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4619]) References #1129: Filtering of child/parent items in table …
11:41 AM Changeset [4618] by Nicklas Nordborg
Fixes #1161: Improve error handling in the extension system
11:41 AM Ticket #1161 (Improve error handling in the extension system) closed by Nicklas Nordborg
fixed: (In [4618]) Fixes #1161: Improve error handling in the extension system
8:33 AM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Martin Svensson
Owner, Status changed
8:19 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) closed by Martin Svensson
fixed: (In [4617]) Fixes #1149 Mark related items for removal when "parent" …
8:19 AM Changeset [4617] by Martin Svensson
Fixes #1149 Mark related items for removal when "parent" item is …

Oct 29, 2008:

12:39 PM Ticket #1161 (Improve error handling in the extension system) updated by Nicklas Nordborg
Owner, Status changed
12:11 PM Ticket #1161 (Improve error handling in the extension system) created by Nicklas Nordborg
The problem is that while an extension may be successfully installed …
11:21 AM Changeset [4616] by Jari Häkkinen
Typo
9:59 AM Changeset [4615] by Nicklas Nordborg
References #1159: Annotation importer should detect non-existing …
9:59 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) updated by Nicklas Nordborg
(In [4615]) References #1159: Annotation importer should detect …
9:58 AM Changeset [4614] by Nicklas Nordborg
Fixes #1159: Annotation importer should detect non-existing column mappings
9:58 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) closed by Nicklas Nordborg
fixed: (In [4614]) Fixes #1159: Annotation importer should detect …
9:24 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) updated by Nicklas Nordborg
Status, Owner changed
9:23 AM Ticket #1129 (Filtering of child/parent items in table listing) closed by Nicklas Nordborg
fixed: (In [4613]) Fixes #1129: Filtering of child/parent items in table …
9:23 AM Changeset [4613] by Nicklas Nordborg
Fixes #1129: Filtering of child/parent items in table listing …

Oct 28, 2008:

4:41 PM Changeset [4612] by Martin Svensson
References #1149 Items that are linked to from a transformation are …
4:41 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Martin Svensson
(In [4612]) References #1149 Items that are linked to from a …
3:00 PM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) updated by Jari Häkkinen
Status changed
3:00 PM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) created by Jari Häkkinen
The three first column headers in MeV export uses Base1 names. These …
2:50 PM Changeset [4611] by Nicklas Nordborg
References #1092: Add listing of child items that are the same type as …
2:50 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Nicklas Nordborg
(In [4611]) References #1092: Add listing of child items that are the …
2:20 PM Changeset [4610] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
2:20 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4610]) References #1129: Filtering of child/parent items in table …
1:22 PM Changeset [4609] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
1:22 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4609]) References #1129: Filtering of child/parent items in table …
1:20 PM Changeset [4608] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes …
1:20 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4608]) References #792: Add support for units to annotation …
9:16 AM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4607]) References #1129: Filtering of child/parent items in table …
9:16 AM Changeset [4607] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …

Oct 27, 2008:

4:32 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Martin Svensson
Owner, Status changed
4:20 PM Changeset [4606] by Martin Svensson
Fixes #1152 Improve transaction handling in Base1PluginExecuter. There …
4:20 PM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) closed by Martin Svensson
fixed: (In [4606]) Fixes #1152 Improve transaction handling in …
10:00 AM Changeset [4605] by Nicklas Nordborg
Merged patch release 2.8.4 to the trunk
9:45 AM Milestone BASE 2.8.4 completed
Bug fixes for 2.8.3. Revision Log: log:branches/2.8-stable@4583:4603
9:45 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.4 (diff)
9:41 AM Changeset [4604] by Nicklas Nordborg
Changes for future release 2.8.5
9:24 AM Changeset [4603] by Nicklas Nordborg
Tagging version 2.8.4
9:23 AM Changeset [4602] by Nicklas Nordborg
Preparing release 2.8.4
9:06 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) created by Nicklas Nordborg
The detection should be done in the job configuration phase and …
9:02 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by Nicklas Nordborg
fixed: (In [4601]) Fixes #1157: Annotation importer fails with …
9:02 AM Changeset [4601] by Nicklas Nordborg
Fixes #1157: Annotation importer fails with NullPointerException in end()
9:01 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Status changed
9:01 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Owner, Status, Milestone, Summary changed
I think the NullPointerException is just masking the real error …
8:30 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) reopened by Nicklas Nordborg
Hmmm... I can't see how a missing Data footer in the file can lead to …

Oct 24, 2008:

4:22 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by Jari Häkkinen
invalid: After getting more details about this I realize that there was a 'Data …
1:43 PM Changeset [4600] by Nicklas Nordborg
Fixes #1156: Add support for ALL and ANY constructs to the Query API
1:43 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) closed by Nicklas Nordborg
fixed: (In [4600]) Fixes #1156: Add support for ALL and ANY constructs to the …
8:39 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
(In [4599]) References #1157: Removed last empty line to check if this …
8:39 AM Changeset [4599] by Nicklas Nordborg
References #1157: Removed last empty line to check if this breaks the …
8:38 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Works on the test code even if I remove the last empty line from the …

Oct 23, 2008:

10:28 PM Ticket #1158 (Improving plugin autodetection) created by Jari Häkkinen
The auto detection of plug-ins can be improved. As it is now starting …
4:16 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) created by Jari Häkkinen
The number of columns is correct. After adding the new line in the …
12:39 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
Owner, Milestone, Status changed
I think I will go for the second alternative. But before this can be …
12:38 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) updated by Nicklas Nordborg
Status, Owner changed
12:38 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) created by Nicklas Nordborg
This is needed for solving #1129. It would allow create queries like …

Oct 22, 2008:

1:41 PM Changeset [4598] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
1:41 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4598]) References #1145: Make the generic raw data importer …
1:07 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) created by Nicklas Nordborg
When there are many plug-in JAR files in the base.plugins directory …
1:00 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) created by Nicklas Nordborg
The plug-in administration page contains more and more plug-ins. It …
11:46 AM Changeset [4597] by Martin Svensson
Fixes #1142 Lack of permission when trying to write to an item or use …
11:46 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) closed by Martin Svensson
fixed: (In [4597]) Fixes #1142 Lack of permission when trying to write to an …
10:46 AM Ticket #1153 (Handling short read transcript sequence data) updated by base
by "documentation purposes" I really mean "archival purposes"
10:43 AM Ticket #1153 (Handling short read transcript sequence data) created by base
This may not be a "core" issue, it might be achieved with core or …
9:19 AM Changeset [4596] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes a …
9:19 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4596]) References #792: Add support for units to annotation …
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