Timeline
Nov 6, 2008:
- 9:26 AM Changeset [4629] by
- References #1162: Raw bioassay importer fails with …
Nov 5, 2008:
- 4:43 PM Changeset [4628] by
- References #1151 Refactored to better use the existing code in the …
- 12:06 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) closed by
- wontfix: Well.... this is maybe not so useful after all. It is simple to just …
- 12:02 PM Ticket #1139 (Display the barcode for array slide in the hybridization information page) closed by
- fixed: (In [4627]) Fixes #1139: Display the barcode for array slide in the …
- 12:02 PM Changeset [4627] by
- Fixes #1139: Display the barcode for array slide in the hybridization …
- 10:56 AM Changeset [4626] by
- Fixes #1164: Reporter importer plug-in displays 'Reporter ID' when …
- 10:56 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) closed by
- fixed: (In [4626]) Fixes #1164: Reporter importer plug-in displays 'Reporter …
Nov 4, 2008:
- 4:45 PM Changeset [4625] by
- References #1151 Created new classes which do the power user-role test …
- 2:56 PM Changeset [4624] by
- Fixes #1155: Automatic plug-in registration wizard should group …
- 2:56 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) closed by
- fixed: (In [4624]) Fixes #1155: Automatic plug-in registration wizard should …
- 11:26 AM Ticket #1166 (Store creation date for items) created by
- Replaces ticket:966 This ticket is about support in the core …
- 10:41 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) closed by
- worksforme: This can be done in the configuration settings. Just enter the desired …
- 10:34 AM Ticket #1165 (Option to insert Block number when importing reporter map with Meta ...) created by
- When using plugin: Reporter map importer. I have a reporter map with …
- 10:15 AM Ticket #1164 (Reporter importer plug-in displays 'Reporter ID' when setting column ...) created by
- In reporter listings there is no 'Reporter ID' column and it takes …
Nov 3, 2008:
- 9:32 AM Changeset [4623] by
- Fixes #1163: Set name of child bioassay when there is only one parent
- 9:32 AM Ticket #1163 (Set name of child bioassay when there is only one parent) closed by
- fixed: (In [4623]) Fixes #1163: Set name of child bioassay when there is only …
- 9:22 AM Ticket #1163 (Set name of child bioassay when there is only one parent) created by
- Currently, the BioAssaySet?.newBioAssay(BioAssay?) copies the name of …
Oct 31, 2008:
- 11:00 AM Changeset [4622] by
- Fixes #1162: Raw bioassay importer fails with …
- 11:00 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) closed by
- fixed: (In [4622]) Fixes #1162: Raw bioassay importer fails with …
- 10:57 AM Ticket #1162 (Raw bioassay importer fails with InvalidUseOfNullException when raw ...) created by
- The error message should be an ItemNotFoundException? instead so users …
- 10:51 AM Changeset [4621] by
- Fixes #1158: Improving plugin autodetection
- 10:51 AM Ticket #1158 (Improving plugin autodetection) closed by
- fixed: (In [4621]) Fixes #1158: Improving plugin autodetection
- 9:54 AM Ticket #394 (Make it possible to export and properly query values in components) closed by
- fixed: (In [4620]) Fixes #394: Make it possible to export and properly query …
- 9:54 AM Changeset [4620] by
- Fixes #394: Make it possible to export and properly query values in …
Oct 30, 2008:
- 2:35 PM Changeset [4619] by
- References #1129: Filtering of child/parent items in table listing …
- 11:41 AM Changeset [4618] by
- Fixes #1161: Improve error handling in the extension system
- 11:41 AM Ticket #1161 (Improve error handling in the extension system) closed by
- fixed: (In [4618]) Fixes #1161: Improve error handling in the extension system
- 8:19 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) closed by
- fixed: (In [4617]) Fixes #1149 Mark related items for removal when "parent" …
- 8:19 AM Changeset [4617] by
- Fixes #1149 Mark related items for removal when "parent" item is …
Oct 29, 2008:
- 12:11 PM Ticket #1161 (Improve error handling in the extension system) created by
- The problem is that while an extension may be successfully installed …
- 11:21 AM Changeset [4616] by
- Typo
- 9:59 AM Changeset [4615] by
- References #1159: Annotation importer should detect non-existing …
- 9:58 AM Changeset [4614] by
- Fixes #1159: Annotation importer should detect non-existing column mappings
- 9:58 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) closed by
- fixed: (In [4614]) Fixes #1159: Annotation importer should detect …
- 9:23 AM Ticket #1129 (Filtering of child/parent items in table listing) closed by
- fixed: (In [4613]) Fixes #1129: Filtering of child/parent items in table …
- 9:23 AM Changeset [4613] by
- Fixes #1129: Filtering of child/parent items in table listing …
Oct 28, 2008:
- 4:41 PM Changeset [4612] by
- References #1149 Items that are linked to from a transformation are …
- 3:00 PM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) created by
- The three first column headers in MeV export uses Base1 names. These …
- 2:50 PM Changeset [4611] by
- References #1092: Add listing of child items that are the same type as …
- 2:20 PM Changeset [4610] by
- References #1129: Filtering of child/parent items in table listing …
- 1:22 PM Changeset [4609] by
- References #1129: Filtering of child/parent items in table listing …
- 1:20 PM Changeset [4608] by
- References #792: Add support for units to annotation values Fixes …
- 9:16 AM Changeset [4607] by
- References #1129: Filtering of child/parent items in table listing …
Oct 27, 2008:
- 4:20 PM Changeset [4606] by
- Fixes #1152 Improve transaction handling in Base1PluginExecuter. There …
- 4:20 PM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) closed by
- fixed: (In [4606]) Fixes #1152 Improve transaction handling in …
- 10:00 AM Changeset [4605] by
- Merged patch release 2.8.4 to the trunk
- 9:45 AM Milestone BASE 2.8.4 completed
- Bug fixes for 2.8.3. Revision Log: log:branches/2.8-stable@4583:4603
- 9:45 AM DownloadPage edited by
- Releasing 2.8.4 (diff)
- 9:41 AM Changeset [4604] by
- Changes for future release 2.8.5
- 9:24 AM Changeset [4603] by
- Tagging version 2.8.4
- 9:23 AM Changeset [4602] by
- Preparing release 2.8.4
- 9:06 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) created by
- The detection should be done in the job configuration phase and …
- 9:02 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by
- fixed: (In [4601]) Fixes #1157: Annotation importer fails with …
- 9:02 AM Changeset [4601] by
- Fixes #1157: Annotation importer fails with NullPointerException? in end()
- 8:30 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) reopened by
- Hmmm... I can't see how a missing Data footer in the file can lead to …
Oct 24, 2008:
- 4:22 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by
- invalid: After getting more details about this I realize that there was a 'Data …
- 1:43 PM Changeset [4600] by
- Fixes #1156: Add support for ALL and ANY constructs to the Query API
- 1:43 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) closed by
- fixed: (In [4600]) Fixes #1156: Add support for ALL and ANY constructs to the …
- 8:39 AM Changeset [4599] by
- References #1157: Removed last empty line to check if this breaks the …
Oct 23, 2008:
- 10:28 PM Ticket #1158 (Improving plugin autodetection) created by
- The auto detection of plug-ins can be improved. As it is now starting …
- 4:16 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) created by
- The number of columns is correct. After adding the new line in the …
- 12:38 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) created by
- This is needed for solving #1129. It would allow create queries like …
Oct 22, 2008:
- 1:41 PM Changeset [4598] by
- References #1145: Make the generic raw data importer support batch …
- 1:07 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) created by
-
When there are many plug-in JAR files in the
base.pluginsdirectory … - 1:00 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) created by
- The plug-in administration page contains more and more plug-ins. It …
- 11:46 AM Changeset [4597] by
- Fixes #1142 Lack of permission when trying to write to an item or use …
- 11:46 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) closed by
- fixed: (In [4597]) Fixes #1142 Lack of permission when trying to write to an …
- 10:43 AM Ticket #1153 (Handling short read transcript sequence data) created by
- This may not be a "core" issue, it might be achieved with core or …
- 9:19 AM Changeset [4596] by
- References #792: Add support for units to annotation values Fixes a …
Oct 21, 2008:
- 11:33 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) reopened by
- There are two more cases where the permission handling can be improved.
- 9:44 AM Changeset [4595] by
- Fixes #1142 Batch importer plug-ins should handle lack of USE …
- 9:44 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) closed by
- fixed: (In [4595]) Fixes #1142 Batch importer plug-ins should handle lack of …
- 9:20 AM Changeset [4594] by
- Fixes #1145: Make the generic raw data importer support batch import
- 9:20 AM Ticket #1145 (Make the generic raw data importer support batch import) closed by
- fixed: (In [4594]) Fixes #1145: Make the generic raw data importer support …
- 8:56 AM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) created by
- The Base1PluginExecuter currently opens and closes transactions in …
- 8:47 AM Changeset [4593] by
- Fixes #1150: Incorrect mapping of BASE1/BASE2 differences by …
- 8:47 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) closed by
- fixed: (In [4593]) Fixes #1150: Incorrect mapping of BASE1/BASE2 differences …
Oct 20, 2008:
- 12:58 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) created by
- The 'roles' test program is already 1. A manual test procedure to …
- 11:08 AM Changeset [4592] by
- References #1150: Incorrect mapping of BASE1/BASE2 differences by …
- 9:08 AM Changeset [4591] by
- Fixes #1147: Incorrect result from isUsed() method prevents deletion …
- 9:08 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) closed by
- fixed: (In [4591]) Fixes #1147: Incorrect result from isUsed() method …
Oct 17, 2008:
- 9:18 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) created by
- As an example if a BASE1-plugin asks for 'geneSymbol' the generated …
Oct 16, 2008:
- 10:06 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) created by
- When a transformation is deleted in the analysis view the created …
- 9:57 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) created by
- is probably not easy. However, when an item is blocked by another item …
- 9:48 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) created by
- The trashcan view shows the dependency icon for the item but clicking …
- 9:26 PM Changeset [4590] by
- Fixed typo.
- 1:23 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) closed by
- fixed: (In [4589]) Fixes #1146: updateindexes.sh should create indexes for …
- 1:23 PM Changeset [4589] by
- Fixes #1146: updateindexes.sh should create indexes for foreign keys
- 12:13 PM Changeset [4588] by
- Fixes #1136 Give away/set owner of items
- 12:13 PM Ticket #1136 (Give away/set owner of items) closed by
- fixed: (In [4588]) Fixes #1136 Give away/set owner of items
- 11:25 AM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) created by
- MySQL automatically generates an index on all foreign key columns, but …
- 8:31 AM Ticket #1145 (Make the generic raw data importer support batch import) created by
- This ticket replaces #1135. The multi-import feature should be …
Oct 15, 2008:
- 4:40 PM Changeset [4587] by
- References #1136 Change to fit all jsp-pages, including files, and …
- 3:14 PM Changeset [4586] by
- This directory was added in [4574] by accident.
- 3:13 PM Changeset [4585] by
- Merged patch release 2.8.3 to the trunk.
- 2:10 PM Milestone BASE 2.8.3 completed
- Revision Log: log:branches/2.8-stable@4535:4583
- 2:10 PM DownloadPage edited by
- Releasing BASE 2.8.3 (diff)
- 2:05 PM Changeset [4584] by
- Changes for future release 2.8.4
- 1:44 PM Changeset [4583] by
- Tagging version 2.8.3
- 1:43 PM Changeset [4582] by
- Preparing release 2.8.3
- 1:41 PM Changeset [4581] by
- Fixes #1144: Test program for Base1PluginExecuter doesn't report a failure
- 1:41 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) closed by
- fixed: (In [4581]) Fixes #1144: Test program for Base1PluginExecuter doesn't …
- 1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) created by
- I was running the test program on Windows which of course fails …
- 1:34 PM Changeset [4580] by
- References #1131: Permission problems creating a new directory in a …
- 1:10 PM Ticket #1143 (Problems with file browser and Internet Explorer) closed by
- fixed: I have now verified the fix.
Oct 14, 2008:
- 9:46 AM Changeset [4579] by
- References #1143: Problems with file browser and Internet Explorer I …
- 8:59 AM Ticket #1143 (Problems with file browser and Internet Explorer) created by
- We have been experiencing some intermittent and strange problems with …
Oct 13, 2008:
- 4:38 PM Changeset [4578] by
- References #1136 Updated most of the index-, view- and list-jsp pages …
- 11:38 AM Changeset [4577] by
- References #792: Add support for units to annotation values Make it …
- 11:04 AM Ticket #1122 (News item sort order should be controllable) closed by
- fixed: (In [4576]) Fixes #1122: News item sort order should be controllable
- 11:04 AM Changeset [4576] by
- Fixes #1122: News item sort order should be controllable
- 10:57 AM Changeset [4575] by
- Fixes #1121: News item 'BASE Server installed' is created after …
- 10:57 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) closed by
- fixed: (In [4575]) Fixes #1121: News item 'BASE Server installed' is created …
- 9:52 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) created by
- The current implementation of the batch importer simply ignores all …
- 9:43 AM Changeset [4574] by
- Fixes #1137: Importing hybridizations fail when association is tried …
- 9:43 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) closed by
- fixed: (In [4574]) Fixes #1137: Importing hybridizations fail when …
Oct 10, 2008:
- 4:37 PM Changeset [4573] by
- References #1136 Added ownership-jsppages and also started to updated …
- 12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by
- invalid: It is more or less impossible to delete the entries since there are …
Oct 9, 2008:
- 2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by
- fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
- 2:56 PM Changeset [4572] by
- Fixes #1141: Spelling error for "Disk usage"
- 2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by
- It is spelled "Disc usage" in several places, for example in the role …
- 2:36 PM Changeset [4571] by
- Fixes #1140: Unclosed DbControl?
- 2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by
- fixed: (In [4571]) Fixes #1140: Unclosed DbControl?
- 12:40 PM Ticket #1140 (Unclosed dbcontrol) created by
- […]
- 10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by
- Currently the slide name is displayed on the hybridization information …
- 9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by
- We have problems with the SMART option for feature mismatch error …
- 9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by
- Hybs and slides have a 1-to-1 relation so the problem is expected. …
Oct 8, 2008:
- 2:35 PM Ticket #1125 (Replace existing file in file upload) closed by
- fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
- 2:35 PM Changeset [4570] by
- Fixes #1125 Replace existing file in file upload
- 10:20 AM Ticket #1136 (Give away/set owner of items) created by
- In ticket:348 take ownership was added to BASE, why is set ownership …
- 9:18 AM Changeset [4569] by
- Fixes #1134: Raw bioassays are available for inclusion in root …
- 9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by
- fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …
Oct 7, 2008:
- 3:54 PM Changeset [4568] by
- Fixes #1105 Automatically set "array design" on raw bioassay that has …
- 3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by
- fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
- 2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by
- The batch importers now support creation of items down to RawBioAssay …
- 2:13 PM Changeset [4567] by
- Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
- 2:13 PM Tickets #1113,1114 batch updated by
- fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
- 1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by
- Creating a new root bioassay from raw bioassays in some cases fail …
- 11:37 AM Changeset [4566] by
- References #792: Add support for units to annotation values Added …
- 10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by
- I have in BASE2 created a new annotation at the Biosource level. When …
- 9:58 AM Changeset [4565] by
- References #792: Add support for units to annotation values Added …
- 9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by
- fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
- 9:57 AM Changeset [4564] by
- Fixes #1104 Automatically set "number of arrays" on hybridization that …
- 9:12 AM Changeset [4563] by
- References #1104, Updating the 'number of arrays'-field when an …
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