Timeline



Oct 30, 2008:

2:35 PM Changeset [4619] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
2:35 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4619]) References #1129: Filtering of child/parent items in table …
11:41 AM Changeset [4618] by Nicklas Nordborg
Fixes #1161: Improve error handling in the extension system
11:41 AM Ticket #1161 (Improve error handling in the extension system) closed by Nicklas Nordborg
fixed: (In [4618]) Fixes #1161: Improve error handling in the extension system
8:33 AM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) updated by Martin Svensson
Status, Owner changed
8:19 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) closed by Martin Svensson
fixed: (In [4617]) Fixes #1149 Mark related items for removal when "parent" …
8:19 AM Changeset [4617] by Martin Svensson
Fixes #1149 Mark related items for removal when "parent" item is …

Oct 29, 2008:

12:39 PM Ticket #1161 (Improve error handling in the extension system) updated by Nicklas Nordborg
Status, Owner changed
12:11 PM Ticket #1161 (Improve error handling in the extension system) created by Nicklas Nordborg
The problem is that while an extension may be successfully installed …
11:21 AM Changeset [4616] by Jari Häkkinen
Typo
9:59 AM Changeset [4615] by Nicklas Nordborg
References #1159: Annotation importer should detect non-existing …
9:59 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) updated by Nicklas Nordborg
(In [4615]) References #1159: Annotation importer should detect …
9:58 AM Changeset [4614] by Nicklas Nordborg
Fixes #1159: Annotation importer should detect non-existing column mappings
9:58 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) closed by Nicklas Nordborg
fixed: (In [4614]) Fixes #1159: Annotation importer should detect …
9:24 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) updated by Nicklas Nordborg
Owner, Status changed
9:23 AM Ticket #1129 (Filtering of child/parent items in table listing) closed by Nicklas Nordborg
fixed: (In [4613]) Fixes #1129: Filtering of child/parent items in table …
9:23 AM Changeset [4613] by Nicklas Nordborg
Fixes #1129: Filtering of child/parent items in table listing …

Oct 28, 2008:

4:41 PM Changeset [4612] by Martin Svensson
References #1149 Items that are linked to from a transformation are …
4:41 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Martin Svensson
(In [4612]) References #1149 Items that are linked to from a …
3:00 PM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) updated by Jari Häkkinen
Status changed
3:00 PM Ticket #1160 (MeV export: Base1 style column headers should be changed to BASE 2 style) created by Jari Häkkinen
The three first column headers in MeV export uses Base1 names. These …
2:50 PM Changeset [4611] by Nicklas Nordborg
References #1092: Add listing of child items that are the same type as …
2:50 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Nicklas Nordborg
(In [4611]) References #1092: Add listing of child items that are the …
2:20 PM Changeset [4610] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
2:20 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4610]) References #1129: Filtering of child/parent items in table …
1:22 PM Changeset [4609] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …
1:22 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4609]) References #1129: Filtering of child/parent items in table …
1:20 PM Changeset [4608] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes …
1:20 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4608]) References #792: Add support for units to annotation …
9:16 AM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
(In [4607]) References #1129: Filtering of child/parent items in table …
9:16 AM Changeset [4607] by Nicklas Nordborg
References #1129: Filtering of child/parent items in table listing …

Oct 27, 2008:

4:32 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Martin Svensson
Owner, Status changed
4:20 PM Changeset [4606] by Martin Svensson
Fixes #1152 Improve transaction handling in Base1PluginExecuter. There …
4:20 PM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) closed by Martin Svensson
fixed: (In [4606]) Fixes #1152 Improve transaction handling in …
10:00 AM Changeset [4605] by Nicklas Nordborg
Merged patch release 2.8.4 to the trunk
9:45 AM Milestone BASE 2.8.4 completed
Bug fixes for 2.8.3. Revision Log: log:branches/2.8-stable@4583:4603
9:45 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.4 (diff)
9:41 AM Changeset [4604] by Nicklas Nordborg
Changes for future release 2.8.5
9:24 AM Changeset [4603] by Nicklas Nordborg
Tagging version 2.8.4
9:23 AM Changeset [4602] by Nicklas Nordborg
Preparing release 2.8.4
9:06 AM Ticket #1159 (Annotation importer should detect non-existing column mappings) created by Nicklas Nordborg
The detection should be done in the job configuration phase and …
9:02 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by Nicklas Nordborg
fixed: (In [4601]) Fixes #1157: Annotation importer fails with …
9:02 AM Changeset [4601] by Nicklas Nordborg
Fixes #1157: Annotation importer fails with NullPointerException in end()
9:01 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Status changed
9:01 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Summary, Owner, Status, Milestone changed
I think the NullPointerException is just masking the real error …
8:30 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) reopened by Nicklas Nordborg
Hmmm... I can't see how a missing Data footer in the file can lead to …

Oct 24, 2008:

4:22 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) closed by Jari Häkkinen
invalid: After getting more details about this I realize that there was a 'Data …
1:43 PM Changeset [4600] by Nicklas Nordborg
Fixes #1156: Add support for ALL and ANY constructs to the Query API
1:43 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) closed by Nicklas Nordborg
fixed: (In [4600]) Fixes #1156: Add support for ALL and ANY constructs to the …
8:39 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
(In [4599]) References #1157: Removed last empty line to check if this …
8:39 AM Changeset [4599] by Nicklas Nordborg
References #1157: Removed last empty line to check if this breaks the …
8:38 AM Ticket #1157 (Annotation importer fails with NullPointerException in end()) updated by Nicklas Nordborg
Works on the test code even if I remove the last empty line from the …

Oct 23, 2008:

10:28 PM Ticket #1158 (Improving plugin autodetection) created by Jari Häkkinen
The auto detection of plug-ins can be improved. As it is now starting …
4:16 PM Ticket #1157 (Annotation importer fails with NullPointerException in end()) created by Jari Häkkinen
The number of columns is correct. After adding the new line in the …
12:39 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
Status, Owner, Milestone changed
I think I will go for the second alternative. But before this can be …
12:38 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) updated by Nicklas Nordborg
Owner, Status changed
12:38 PM Ticket #1156 (Add support for ALL and ANY constructs to the Query API) created by Nicklas Nordborg
This is needed for solving #1129. It would allow create queries like …

Oct 22, 2008:

1:41 PM Changeset [4598] by Nicklas Nordborg
References #1145: Make the generic raw data importer support batch …
1:41 PM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
(In [4598]) References #1145: Make the generic raw data importer …
1:07 PM Ticket #1155 (Automatic plug-in registration wizard should group plug-ins by JAR file) created by Nicklas Nordborg
When there are many plug-in JAR files in the base.plugins directory …
1:00 PM Ticket #1154 (Add a 'Plug-in package' item for grouping plug-ins) created by Nicklas Nordborg
The plug-in administration page contains more and more plug-ins. It …
11:46 AM Changeset [4597] by Martin Svensson
Fixes #1142 Lack of permission when trying to write to an item or use …
11:46 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) closed by Martin Svensson
fixed: (In [4597]) Fixes #1142 Lack of permission when trying to write to an …
10:46 AM Ticket #1153 (Handling short read transcript sequence data) updated by base
by "documentation purposes" I really mean "archival purposes"
10:43 AM Ticket #1153 (Handling short read transcript sequence data) created by base
This may not be a "core" issue, it might be achieved with core or …
9:19 AM Changeset [4596] by Nicklas Nordborg
References #792: Add support for units to annotation values Fixes a …
9:19 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4596]) References #792: Add support for units to annotation …

Oct 21, 2008:

11:33 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) reopened by Martin Svensson
There are two more cases where the permission handling can be improved.
9:55 AM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) updated by Martin Svensson
Owner, Status changed
9:44 AM Changeset [4595] by Martin Svensson
Fixes #1142 Batch importer plug-ins should handle lack of USE …
9:44 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) closed by Martin Svensson
fixed: (In [4595]) Fixes #1142 Batch importer plug-ins should handle lack of …
9:20 AM Changeset [4594] by Nicklas Nordborg
Fixes #1145: Make the generic raw data importer support batch import
9:20 AM Ticket #1145 (Make the generic raw data importer support batch import) closed by Nicklas Nordborg
fixed: (In [4594]) Fixes #1145: Make the generic raw data importer support …
8:56 AM Ticket #1152 (Improve transaction handling in Base1PluginExecuter) created by Nicklas Nordborg
The Base1PluginExecuter currently opens and closes transactions in …
8:47 AM Changeset [4593] by Nicklas Nordborg
Fixes #1150: Incorrect mapping of BASE1/BASE2 differences by …
8:47 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) closed by Nicklas Nordborg
fixed: (In [4593]) Fixes #1150: Incorrect mapping of BASE1/BASE2 differences …

Oct 20, 2008:

12:58 PM Ticket #1151 (Create a batch-importer version of the 'roles' test procedure) created by Nicklas Nordborg
The 'roles' test program is already 1. A manual test procedure to …
11:08 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) updated by Nicklas Nordborg
Owner, Status changed
11:08 AM Changeset [4592] by Nicklas Nordborg
References #1150: Incorrect mapping of BASE1/BASE2 differences by …
11:08 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) updated by Nicklas Nordborg
(In [4592]) References #1150: Incorrect mapping of BASE1/BASE2 …
9:09 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) updated by Nicklas Nordborg
Owner, Status changed
9:08 AM Changeset [4591] by Nicklas Nordborg
Fixes #1147: Incorrect result from isUsed() method prevents deletion …
9:08 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) closed by Nicklas Nordborg
fixed: (In [4591]) Fixes #1147: Incorrect result from isUsed() method …
9:00 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Nicklas Nordborg
Status, Owner changed
8:53 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Nicklas Nordborg
Priority, Summary changed
I think I can explain this and it is possible to reproduce with the …
8:14 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Nicklas Nordborg
Type, Priority, Milestone, Summary changed
I think I was wrong about this one. I was thinking about the actual …

Oct 17, 2008:

11:19 AM Ticket #1148 (Removing items from trashcan when circular references exists ...) updated by Nicklas Nordborg
The circular reference must be broken. One example is when a user is …
10:21 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Jari Häkkinen
Come to think of it, these directories are created by a failed job. …
10:19 AM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Jari Häkkinen
Could this be a part of explaining ticket:1147?
10:17 AM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Jari Häkkinen
I am sure that no one else made any change during my tests because I …
10:14 AM Ticket #1148 (Removing items from trashcan when circular references exists ...) updated by Jari Häkkinen
So what you mean is that I have to edit the item itself and remove any …
9:18 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) created by Nicklas Nordborg
As an example if a BASE1-plugin asks for 'geneSymbol' the generated …
8:25 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) updated by Martin Svensson
Owner, Status changed

Oct 16, 2008:

10:37 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Nicklas Nordborg
Milestone changed
No, anything created by a transformation is softly linked using …
10:30 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Nicklas Nordborg
Could it be that someone else has deleted the dependency while you …
10:26 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) updated by Nicklas Nordborg
Milestone changed
The trashcan is already "smart" when the items are in a tree. It will …
10:06 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) created by Jari Häkkinen
When a transformation is deleted in the analysis view the created …
10:01 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Jari Häkkinen
Why is there a dependency icon at the first place? There is no …
9:57 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) created by Jari Häkkinen
is probably not easy. However, when an item is blocked by another item …
9:48 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) created by Jari Häkkinen
The trashcan view shows the dependency icon for the item but clicking …
9:26 PM Changeset [4590] by Jari Häkkinen
Fixed typo.
1:23 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) closed by Nicklas Nordborg
fixed: (In [4589]) Fixes #1146: updateindexes.sh should create indexes for …
1:23 PM Changeset [4589] by Nicklas Nordborg
Fixes #1146: updateindexes.sh should create indexes for foreign keys
12:16 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) updated by Nicklas Nordborg
Owner, Status changed
12:13 PM Changeset [4588] by Martin Svensson
Fixes #1136 Give away/set owner of items
12:13 PM Ticket #1136 (Give away/set owner of items) closed by Martin Svensson
fixed: (In [4588]) Fixes #1136 Give away/set owner of items
11:25 AM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) created by Nicklas Nordborg
MySQL automatically generates an index on all foreign key columns, but …
11:04 AM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
Status changed
8:31 AM Ticket #1145 (Make the generic raw data importer support batch import) created by Nicklas Nordborg
This ticket replaces #1135. The multi-import feature should be …
8:28 AM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) updated by Nicklas Nordborg
Owner, Milestone, Status changed
It doesn't work! The Plugin API has not been design for a plug-in …

Oct 15, 2008:

4:40 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4587]) References #1136 Change to fit all jsp-pages, including …
4:40 PM Changeset [4587] by Martin Svensson
References #1136 Change to fit all jsp-pages, including files, and …
3:14 PM Changeset [4586] by Nicklas Nordborg
This directory was added in [4574] by accident.
3:13 PM Changeset [4585] by Nicklas Nordborg
Merged patch release 2.8.3 to the trunk.
2:10 PM Milestone BASE 2.8.3 completed
Revision Log: log:branches/2.8-stable@4535:4583
2:10 PM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.8.3 (diff)
2:05 PM Changeset [4584] by Nicklas Nordborg
Changes for future release 2.8.4
1:44 PM Changeset [4583] by Nicklas Nordborg
Tagging version 2.8.3
1:43 PM Changeset [4582] by Nicklas Nordborg
Preparing release 2.8.3
1:41 PM Changeset [4581] by Nicklas Nordborg
Fixes #1144: Test program for Base1PluginExecuter doesn't report a failure
1:41 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) closed by Nicklas Nordborg
fixed: (In [4581]) Fixes #1144: Test program for Base1PluginExecuter doesn't …
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) updated by Nicklas Nordborg
Owner, Status changed
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) created by Nicklas Nordborg
I was running the test program on Windows which of course fails …
1:34 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
(In [4580]) References #1131: Permission problems creating a new …
1:34 PM Changeset [4580] by Nicklas Nordborg
References #1131: Permission problems creating a new directory in a …
1:10 PM Ticket #1143 (Problems with file browser and Internet Explorer) closed by Nicklas Nordborg
fixed: I have now verified the fix.

Oct 14, 2008:

9:46 AM Changeset [4579] by Nicklas Nordborg
References #1143: Problems with file browser and Internet Explorer I …
9:46 AM Ticket #1143 (Problems with file browser and Internet Explorer) updated by Nicklas Nordborg
(In [4579]) References #1143: Problems with file browser and Internet …
9:00 AM bild4.png attached to Ticket #1143 by Nicklas Nordborg
Filter for the "Type" column
9:00 AM bild3.png attached to Ticket #1143 by Nicklas Nordborg
Third error message
8:59 AM bild2.png attached to Ticket #1143 by Nicklas Nordborg
Second error message
8:59 AM bild1.png attached to Ticket #1143 by Nicklas Nordborg
First error message
8:59 AM Ticket #1143 (Problems with file browser and Internet Explorer) created by Nicklas Nordborg
We have been experiencing some intermittent and strange problems with …

Oct 13, 2008:

4:38 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4578]) References #1136 Updated most of the index-, view- and …
4:38 PM Changeset [4578] by Martin Svensson
References #1136 Updated most of the index-, view- and list-jsp pages …
11:38 AM Changeset [4577] by Nicklas Nordborg
References #792: Add support for units to annotation values Make it …
11:38 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4577]) References #792: Add support for units to annotation …
11:04 AM Ticket #1122 (News item sort order should be controllable) closed by Nicklas Nordborg
fixed: (In [4576]) Fixes #1122: News item sort order should be controllable
11:04 AM Changeset [4576] by Nicklas Nordborg
Fixes #1122: News item sort order should be controllable
10:57 AM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
Priority, Milestone changed
10:57 AM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
Owner, Status changed
Latest added should be displayed first
10:57 AM Changeset [4575] by Nicklas Nordborg
Fixes #1121: News item 'BASE Server installed' is created after …
10:57 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) closed by Nicklas Nordborg
fixed: (In [4575]) Fixes #1121: News item 'BASE Server installed' is created …
10:41 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) updated by Nicklas Nordborg
Owner, Milestone, Status changed
I'll move the news creation to the last step in the Install class.
9:53 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) updated by Nicklas Nordborg
My first approach was to simple filter away array slides that had …
9:52 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) created by Nicklas Nordborg
The current implementation of the batch importer simply ignores all …
9:43 AM Changeset [4574] by Nicklas Nordborg
Fixes #1137: Importing hybridizations fail when association is tried …
9:43 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) closed by Nicklas Nordborg
fixed: (In [4574]) Fixes #1137: Importing hybridizations fail when …
7:56 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) updated by Nicklas Nordborg
Status, Owner changed

Oct 10, 2008:

4:37 PM Changeset [4573] by Martin Svensson
References #1136 Added ownership-jsppages and also started to updated …
4:37 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4573]) References #1136 Added ownership-jsppages and also started …
12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by Nicklas Nordborg
invalid: It is more or less impossible to delete the entries since there are …
11:47 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Jari Häkkinen
Replying to nicklas: > This works as expected in our test …
11:13 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Milestone changed
11:12 AM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) updated by Jari Häkkinen
Milestone changed

Oct 9, 2008:

2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by Nicklas Nordborg
fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
2:56 PM Changeset [4572] by Nicklas Nordborg
Fixes #1141: Spelling error for "Disk usage"
2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by Nicklas Nordborg
It is spelled "Disc usage" in several places, for example in the role …
2:36 PM Changeset [4571] by Nicklas Nordborg
Fixes #1140: Unclosed DbControl
2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by Nicklas Nordborg
fixed: (In [4571]) Fixes #1140: Unclosed DbControl
12:40 PM Ticket #1140 (Unclosed dbcontrol) updated by Martin Svensson
Description changed
12:40 PM Ticket #1140 (Unclosed dbcontrol) created by Martin Svensson
[…]
11:04 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Nicklas Nordborg
This works as expected in our test cases. Are you sure that the …
10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by Jari Häkkinen
Currently the slide name is displayed on the hybridization information …
9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by Jari Häkkinen
We have problems with the SMART option for feature mismatch error …
9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by Jari Häkkinen
Hybs and slides have a 1-to-1 relation so the problem is expected. …

Oct 8, 2008:

2:43 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
Status, Owner changed
2:35 PM Ticket #1125 (Replace existing file in file upload) closed by Martin Svensson
fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
2:35 PM Changeset [4570] by Martin Svensson
Fixes #1125 Replace existing file in file upload
11:35 AM Ticket #1136 (Give away/set owner of items) updated by Nicklas Nordborg
I think the easiest way to implement this functionality is to change …
11:22 AM multi-rawdata-importer-1.txt attached to Ticket #1135 by Nicklas Nordborg
Implementation specifications v.1
10:20 AM Ticket #1136 (Give away/set owner of items) created by Jari Häkkinen
In ticket:348 take ownership was added to BASE, why is set ownership …
9:24 AM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) updated by Nicklas Nordborg
Status, Summary, Type, Owner changed
9:18 AM Changeset [4569] by Nicklas Nordborg
Fixes #1134: Raw bioassays are available for inclusion in root …
9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …
8:55 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Status, Owner changed
8:45 AM Ticket #1125 (Replace existing file in file upload) updated by Martin Svensson
Owner, Status changed

Oct 7, 2008:

10:42 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
I see no reason to go for a more complicated solution now, just add a …
8:24 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
Description changed
The root problem with this is the same as for #1128. The child items …
8:11 PM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
The date is stored as a date only, with no time information. Sorting …
8:09 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) updated by Nicklas Nordborg
Ah... this happens because the new item was deleted (or the title was …
8:02 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
If a note about the "missing raw bioassays" is enough, then it should …
4:03 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
The easy solution seems to be enough if we add a note in the raw …
3:54 PM Changeset [4568] by Martin Svensson
Fixes #1105 Automatically set "array design" on raw bioassay that has …
3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by Martin Svensson
fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
3:00 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Replying to jari: > Replying to nicklas: > > …
2:27 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
Replying to nicklas: > Just to clarify, this ticket is …
2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by Jari Häkkinen
The batch importers now support creation of items down to RawBioAssay …
2:13 PM Changeset [4567] by Nicklas Nordborg
Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
2:13 PM Tickets #1113,​1114 batch updated by Nicklas Nordborg
fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
2:10 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Type changed
Just to clarify, this ticket is about the "Formula intensity …
1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by Jari Häkkinen
Creating a new root bioassay from raw bioassays in some cases fail …
1:39 PM Ticket #1114 (Blocking of log in action) updated by Nicklas Nordborg
Status, Owner changed
11:45 AM Ticket #1113 (Broadcast to currently active BASE users) updated by Nicklas Nordborg
Owner, Status changed
11:37 AM Changeset [4566] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:37 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4566]) References #792: Add support for units to annotation …
11:19 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
It is not trivial to automatically inherit annotations. There must be …
11:13 AM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) updated by Martin Svensson
Status, Owner changed
10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by base
I have in BASE2 created a new annotation at the Biosource level. When …
9:58 AM Changeset [4565] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:58 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4565]) References #792: Add support for units to annotation …
9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by Martin Svensson
fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
9:57 AM Changeset [4564] by Martin Svensson
Fixes #1104 Automatically set "number of arrays" on hybridization that …
9:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
(In [4563]) References #1104, Updating the 'number of arrays'-field …
9:12 AM Changeset [4563] by Martin Svensson
References #1104, Updating the 'number of arrays'-field when an …

Oct 6, 2008:

2:10 PM Changeset [4562] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:10 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4562]) References #792: Add support for units to annotation …
11:18 AM Changeset [4561] by Nicklas Nordborg
References #792: Add support for units to annotation values Updated …
11:18 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4561]) References #792: Add support for units to annotation …
11:14 AM WikiStart edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:27 AM DeveloperInformation edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:22 AM Changeset [4560] by Nicklas Nordborg
References #792: Add support for units to annotation values All list …
9:22 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4560]) References #792: Add support for units to annotation …
8:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
Status, Owner changed

Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:26 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4558]) References #792: Add support for units to annotation …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
12:28 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4557]) References #792: Add support for units to annotation …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …
10:56 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4556]) References #792: Add support for units to annotation …

Oct 2, 2008:

1:55 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4555]) References #792: Add support for units to annotation …
1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
1:01 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
The problem seems to be that the Directory.getNew() method fails if …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker plug-in. …
11:29 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Status, Owner changed

Sep 30, 2008:

2:14 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
Replying to jari: > ... (there are some other problems …
1:35 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
The Base1PluginExecuter selects to store data in a directory based on …
12:03 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Hmmm... I really don't understand this bug report. It is up to the …
11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …
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