Timeline



Oct 10, 2008:

4:37 PM Changeset [4573] by Martin Svensson
References #1136 Added ownership-jsppages and also started to updated …
4:37 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4573]) References #1136 Added ownership-jsppages and also started …
12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by Nicklas Nordborg
invalid: It is more or less impossible to delete the entries since there are …
11:47 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Jari Häkkinen
Replying to nicklas: > This works as expected in our test …
11:13 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Milestone changed
11:12 AM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) updated by Jari Häkkinen
Milestone changed

Oct 9, 2008:

2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by Nicklas Nordborg
fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
2:56 PM Changeset [4572] by Nicklas Nordborg
Fixes #1141: Spelling error for "Disk usage"
2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by Nicklas Nordborg
It is spelled "Disc usage" in several places, for example in the role …
2:36 PM Changeset [4571] by Nicklas Nordborg
Fixes #1140: Unclosed DbControl
2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by Nicklas Nordborg
fixed: (In [4571]) Fixes #1140: Unclosed DbControl
12:40 PM Ticket #1140 (Unclosed dbcontrol) updated by Martin Svensson
Description changed
12:40 PM Ticket #1140 (Unclosed dbcontrol) created by Martin Svensson
[…]
11:04 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Nicklas Nordborg
This works as expected in our test cases. Are you sure that the …
10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by Jari Häkkinen
Currently the slide name is displayed on the hybridization information …
9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by Jari Häkkinen
We have problems with the SMART option for feature mismatch error …
9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by Jari Häkkinen
Hybs and slides have a 1-to-1 relation so the problem is expected. …

Oct 8, 2008:

2:43 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
Owner, Status changed
2:35 PM Ticket #1125 (Replace existing file in file upload) closed by Martin Svensson
fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
2:35 PM Changeset [4570] by Martin Svensson
Fixes #1125 Replace existing file in file upload
11:35 AM Ticket #1136 (Give away/set owner of items) updated by Nicklas Nordborg
I think the easiest way to implement this functionality is to change …
11:22 AM multi-rawdata-importer-1.txt attached to Ticket #1135 by Nicklas Nordborg
Implementation specifications v.1
10:20 AM Ticket #1136 (Give away/set owner of items) created by Jari Häkkinen
In ticket:348 take ownership was added to BASE, why is set ownership …
9:24 AM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) updated by Nicklas Nordborg
Summary, Owner, Type, Status changed
9:18 AM Changeset [4569] by Nicklas Nordborg
Fixes #1134: Raw bioassays are available for inclusion in root …
9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …
8:55 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Status, Owner changed
8:45 AM Ticket #1125 (Replace existing file in file upload) updated by Martin Svensson
Owner, Status changed

Oct 7, 2008:

10:42 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
I see no reason to go for a more complicated solution now, just add a …
8:24 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
Description changed
The root problem with this is the same as for #1128. The child items …
8:11 PM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
The date is stored as a date only, with no time information. Sorting …
8:09 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) updated by Nicklas Nordborg
Ah... this happens because the new item was deleted (or the title was …
8:02 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
If a note about the "missing raw bioassays" is enough, then it should …
4:03 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
The easy solution seems to be enough if we add a note in the raw …
3:54 PM Changeset [4568] by Martin Svensson
Fixes #1105 Automatically set "array design" on raw bioassay that has …
3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by Martin Svensson
fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
3:00 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Replying to jari: > Replying to nicklas: > > …
2:27 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
Replying to nicklas: > Just to clarify, this ticket is …
2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by Jari Häkkinen
The batch importers now support creation of items down to RawBioAssay …
2:13 PM Changeset [4567] by Nicklas Nordborg
Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
2:13 PM Tickets #1113,​1114 batch updated by Nicklas Nordborg
fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
2:10 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Type changed
Just to clarify, this ticket is about the "Formula intensity …
1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by Jari Häkkinen
Creating a new root bioassay from raw bioassays in some cases fail …
1:39 PM Ticket #1114 (Blocking of log in action) updated by Nicklas Nordborg
Status, Owner changed
11:45 AM Ticket #1113 (Broadcast to currently active BASE users) updated by Nicklas Nordborg
Status, Owner changed
11:37 AM Changeset [4566] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:37 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4566]) References #792: Add support for units to annotation …
11:19 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
It is not trivial to automatically inherit annotations. There must be …
11:13 AM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) updated by Martin Svensson
Owner, Status changed
10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by base
I have in BASE2 created a new annotation at the Biosource level. When …
9:58 AM Changeset [4565] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:58 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4565]) References #792: Add support for units to annotation …
9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by Martin Svensson
fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
9:57 AM Changeset [4564] by Martin Svensson
Fixes #1104 Automatically set "number of arrays" on hybridization that …
9:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
(In [4563]) References #1104, Updating the 'number of arrays'-field …
9:12 AM Changeset [4563] by Martin Svensson
References #1104, Updating the 'number of arrays'-field when an …

Oct 6, 2008:

2:10 PM Changeset [4562] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:10 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4562]) References #792: Add support for units to annotation …
11:18 AM Changeset [4561] by Nicklas Nordborg
References #792: Add support for units to annotation values Updated …
11:18 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4561]) References #792: Add support for units to annotation …
11:14 AM WikiStart edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:27 AM DeveloperInformation edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:22 AM Changeset [4560] by Nicklas Nordborg
References #792: Add support for units to annotation values All list …
9:22 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4560]) References #792: Add support for units to annotation …
8:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
Status, Owner changed

Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:26 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4558]) References #792: Add support for units to annotation …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
12:28 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4557]) References #792: Add support for units to annotation …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …
10:56 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4556]) References #792: Add support for units to annotation …

Oct 2, 2008:

1:55 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4555]) References #792: Add support for units to annotation …
1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
1:01 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
The problem seems to be that the Directory.getNew() method fails if …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker plug-in. …
11:29 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Status, Owner changed

Sep 30, 2008:

2:14 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
Replying to jari: > ... (there are some other problems …
1:35 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
The Base1PluginExecuter selects to store data in a directory based on …
12:03 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Hmmm... I really don't understand this bug report. It is up to the …
11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …

Sep 29, 2008:

11:41 AM Changeset [4552] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:41 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4552]) References #792: Add support for units to annotation …
9:49 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #1130: Batch importer may mix lookup for scanners …
9:48 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
Last commit [4550] was for ticket #1130!
9:47 AM Changeset [4551] by Nicklas Nordborg
Fixes #1127: Batch import: Problem importing labeled extracts - …
9:47 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #1127: Batch import: Problem importing labeled …
9:12 AM Changeset [4550] by Nicklas Nordborg
Fixes #1030: Batch importer may mix lookup for scanners and print robots
9:12 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
(In [4550]) Fixes #1030: Batch importer may mix lookup for scanners …
8:43 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) created by Nicklas Nordborg
The same template query is used for both scanners and print robots. …

Sep 26, 2008:

2:52 PM Changeset [4549] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:52 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4549]) References #792: Add support for units to annotation …
2:29 PM Changeset [4548] by Nicklas Nordborg
References #792: Add support for units to annotation values …
2:29 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4548]) References #792: Add support for units to annotation …
11:41 AM Ticket #1128 (Export of child items) updated by Jari Häkkinen
Maybe we should create a special export that allows inclusion of child …
11:41 AM Ticket #1129 (Filtering of child/parent items in table listing) created by Jari Häkkinen
In many cases it would be nice to be able to filter on child or parent …
11:03 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4547]) References #792: Add support for units to annotation …
11:03 AM Changeset [4547] by Nicklas Nordborg
References #792: Add support for units to annotation values * Added …

Sep 25, 2008:

6:35 PM Ticket #1128 (Export of child items) updated by Nicklas Nordborg
The table exporter plug-in only supports exporting "simple" …
6:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Type, Milestone changed
The description seems correct. The importer doesn't filter on protocol …
5:28 PM DocBookSupport edited by Jari Häkkinen
Added link to on-line version of the sample sheet. (diff)
5:23 PM Ticket #1128 (Export of child items) created by base
Export of items does not allow selection of child items. I think that …
5:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) created by base
I tried to import labeled extracts with a protocol connected (protocol …
2:35 PM Changeset [4546] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
2:35 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4546]) References #792: Add support for units to annotation …
2:13 PM Changeset [4545] by Nicklas Nordborg
References #792: Add support for units to annotation values * Change …
2:13 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4545]) References #792: Add support for units to annotation …
9:01 AM Changeset [4544] by Nicklas Nordborg
References #792: Add support for units to annotation values * Made …
9:01 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4544]) References #792: Add support for units to annotation …

Sep 24, 2008:

11:11 AM Features edited by Jari Häkkinen
Changed info on migration from BASE 1.2 to latest BASE. (diff)

Sep 22, 2008:

2:43 PM Changeset [4543] by Nicklas Nordborg
References #792: Add support for units to annotation values Added web …
2:43 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4543]) References #792: Add support for units to annotation …
9:19 AM Changeset [4542] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
9:19 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4542]) References #792: Add support for units to annotation …
8:50 AM Changeset [4541] by Nicklas Nordborg
References #792: Add support for units to annotation values Major …
8:50 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4541]) References #792: Add support for units to annotation …

Sep 21, 2008:

4:03 PM reporter_map_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:02 PM reporter_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix2.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM reporter_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy5_cy3.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy3_cy5.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen

Sep 19, 2008:

10:27 AM Ticket #903 (Experiment Explorer is slow) updated by Jari Häkkinen
After my move to a more BASE user based position I begin to understand …
7:51 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate: Part of #425.
7:50 AM Changeset [4540] by Nicklas Nordborg
References #425, #1126. Now sets character set correctly when file upload.
7:50 AM Tickets #425,​1126 batch updated by Nicklas Nordborg
(In [4540]) References #425, #1126. Now sets character set correctly …

Sep 18, 2008:

5:16 PM Changeset [4539] by Martin Svensson
References #1092 Two of three biomaterials are updated and …
5:16 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
(In [4539]) References #1092 Two of three biomaterials are updated and …
4:16 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Jari Häkkinen
Of course. Some more details. After the upload clicking on Edit shows …
3:37 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Nicklas Nordborg
Stacktrace?
3:10 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) created by Jari Häkkinen
During upload of the configuration I do not select a charset ... …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Description changed
1:42 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4538]) References #792: Add support for units to annotation …
1:42 PM Changeset [4538] by Nicklas Nordborg
References #792: Add support for units to annotation values First …
11:31 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Status, Owner changed
11:23 AM Changeset [4537] by Nicklas Nordborg
Merged patch release 2.8.2 to the trunk
11:08 AM Milestone BASE 2.8.2 completed
Revision Log: log:branches/2.8-stable@4500:4535
11:07 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed
11:07 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.2 (diff)
11:03 AM Changeset [4536] by Nicklas Nordborg
Changes for future release 2.8.3
10:42 AM Changeset [4535] by Nicklas Nordborg
Tagging version 2.8.2
9:00 AM Changeset [4534] by Nicklas Nordborg
Preparing release 2.8.2
8:55 AM Ticket #1125 (Replace existing file in file upload) created by Nicklas Nordborg
Add option to allow replacing an existing file in "Upload new file" dialog.
8:44 AM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4533]) Fixes #1112: Create new items with project default …
8:44 AM Changeset [4533] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …

Sep 17, 2008:

2:48 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
Status, Owner changed
2:36 PM Changeset [4532] by Nicklas Nordborg
Reverting changes from [4529] to avoid conflicts when merging 2.8.2 …
2:27 PM Changeset [4531] by Nicklas Nordborg
References #1124: Base1PluginExecuter fails to import lines with empty …
2:27 PM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
(In [4531]) References #1124: Base1PluginExecuter fails to import …
12:51 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) closed by Martin Svensson
fixed: The links on the wiki pages will be updated as soon as 2.8.2 is released.
12:48 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") closed by Martin Svensson
fixed
12:38 PM Ticket #1118 (Change problematic forms to use POST instead of GET) closed by Nicklas Nordborg
fixed: Closing this so we can release 2.8.2. Open a new ticket if more forms …
12:36 PM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
(In [4506]) References #1118: Change problematic forms to use POST …
12:36 PM Ticket #118 (Not allowed to change password) updated by Nicklas Nordborg
Previous commit belongs to ticket #1118.
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Status changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Owner, Status changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) reopened by Nicklas Nordborg
There is also a similar problem with extra values being skipped if …
9:22 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed: (In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines …
9:22 AM Changeset [4530] by Nicklas Nordborg
Fixes #1124: Base1PluginExecuter fails to import lines with empty fields
8:58 AM Changeset [4529] by Jari Häkkinen
Addresses #1124. The index counter was not updated properly for number …
8:58 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
(In [4529]) Addresses #1124. The index counter was not updated …
8:52 AM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
See #1123.
8:52 AM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) closed by Nicklas Nordborg
invalid: Seems like a side-effect of a bad implementation of #1112.
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
Status changed
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) created by Jari Häkkinen
I have problems importing BASEFiles that are a mix of serial and …

Sep 16, 2008:

11:31 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Raw data importer and Formula intensity calculator have the same issue.
8:06 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Description changed
The same is true for Base1PluginExecuter. Has something changed in …
7:42 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) created by Jari Häkkinen
I am running rev 4527 on trunk. Setting use permission to yes will …
4:29 PM Changeset [4528] by Martin Svensson
References #1111 Changed two misleading tooltips. Could not find any …
4:29 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Martin Svensson
(In [4528]) References #1111 Changed two misleading tooltips. Could …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
SI units reference: http://physics.nist.gov/cuu/Units/units.html
12:58 PM Changeset [4527] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
12:58 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4527]) Fixes #1112: Create new items with project default …
9:25 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status, Owner changed
8:41 AM Ticket #425 (Store the character encoding for text files) closed by Nicklas Nordborg
fixed
8:39 AM Changeset [4526] by Nicklas Nordborg
References #425: Store the character encoding for text files Updated …
8:39 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4526]) References #425: Store the character encoding for text …
8:31 AM Changeset [4525] by Nicklas Nordborg
References #425: Store the character encoding for text files Adding …
8:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4525]) References #425: Store the character encoding for text …

Sep 15, 2008:

1:34 PM Ticket #1122 (News item sort order should be controllable) created by Jari Häkkinen
The order of the news items in the 'home' listing follows date …
1:28 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) created by Jari Häkkinen
I get the message […] after upgrading from 2.7 to 2.8 (and even …
11:44 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4524]) References #425: Store the character encoding for text …
11:44 AM Changeset [4524] by Nicklas Nordborg
References #425: Store the character encoding for text files Document …
11:18 AM Changeset [4523] by Nicklas Nordborg
References #425: Store the character encoding for text files Export …
11:18 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4523]) References #425: Store the character encoding for text …
9:41 AM Changeset [4522] by Nicklas Nordborg
References #425: Store the character encoding for text files Added …
9:41 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4522]) References #425: Store the character encoding for text …
9:40 AM Changeset [4521] by Nicklas Nordborg
References #425: Store the character encoding for text files "Test …
9:40 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4521]) References #425: Store the character encoding for text …
9:22 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Lots of units and conversion factors: http://www.convertworld.com
8:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4520]) References #425: Store the character encoding for text …
8:31 AM Changeset [4520] by Nicklas Nordborg
References #425: Store the character encoding for text files Fixed in …

Sep 12, 2008:

9:34 AM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Martin Svensson
Owner, Status changed
9:29 AM Ticket #1110 (Update documentation links on Wiki and in docbook-text) updated by Martin Svensson
(In [4519]) References #1110 The update of source files is done. Still …
9:29 AM Changeset [4519] by Martin Svensson
References #1110 The update of source files is done. Still left to …
8:23 AM Ticket #1120 (The dynamic part of BASE should keep track whether intensity data is ...) created by Jari Häkkinen
I know the tradition is to store data non-logged but there have been …

Sep 11, 2008:

10:21 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) closed by Jari Häkkinen
fixed: (In [4518]) Fixes #1119.
10:21 PM Changeset [4518] by Jari Häkkinen
Fixes #1119.
10:11 PM Changeset [4517] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:11 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4517]) Addresses #1106. Missed to change reference wherefrom …
10:09 PM Changeset [4516] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:09 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4516]) Addresses #1106. Missed to change reference wherefrom …
10:08 PM Changeset [4515] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:08 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4515]) Addresses #1106. Missed to change reference wherefrom …
10:07 PM Changeset [4514] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:07 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4514]) Addresses #1106. Missed to change reference wherefrom …
10:06 PM Changeset [4513] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:06 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4513]) Addresses #1106. Missed to change reference wherefrom …
10:05 PM Changeset [4512] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:05 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4512]) Addresses #1106. Missed to change reference wherefrom …
10:04 PM Changeset [4511] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:04 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4511]) Addresses #1106. Missed to change reference wherefrom …
10:03 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4510]) Addresses #1106. Missed to change reference wherefrom …
10:03 PM Changeset [4510] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:01 PM Changeset [4509] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:01 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4509]) Addresses #1106. Missed to change reference wherefrom …
10:00 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4508]) Addresses #1106. Missed to change reference wherefrom …
10:00 PM Changeset [4508] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
8:56 PM Changeset [4507] by Jari Häkkinen
Adding svndigest ignore propery.
8:23 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) updated by Jari Häkkinen
Status changed
8:23 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) created by Jari Häkkinen
11:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
Status changed
11:29 AM Changeset [4506] by Nicklas Nordborg
References #118: Change problematic forms to use POST instead of GET …
11:29 AM Ticket #118 (Not allowed to change password) updated by Nicklas Nordborg
(In [4506]) References #118: Change problematic forms to use POST …
11:15 AM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
Status, Owner changed
8:53 AM Changeset [4505] by Nicklas Nordborg
Fixes #1097: Outdated FAQs about raw data files
8:53 AM Ticket #1097 (Outdated FAQs about raw data files) closed by Nicklas Nordborg
fixed: (In [4505]) Fixes #1097: Outdated FAQs about raw data files
8:52 AM Ticket #1097 (Outdated FAQs about raw data files) updated by Nicklas Nordborg
Status, Owner, Description, Summary changed
8:28 AM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) closed by Jari Häkkinen
fixed
8:22 AM Changeset [4504] by Nicklas Nordborg
Fixes #1080: Extensions: Manual scan fails.
8:22 AM Ticket #1080 (Extensions: Manual scan fails.) closed by Nicklas Nordborg
fixed: (In [4504]) Fixes #1080: Extensions: Manual scan fails.
8:03 AM Ticket #1080 (Extensions: Manual scan fails.) updated by Nicklas Nordborg
Priority, Status, Component, Owner changed
8:01 AM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
Description changed
7:58 AM Ticket #1118 (Change problematic forms to use POST instead of GET) created by Nicklas Nordborg
Problematic forms are forms were the generated GET url get's too long …

Sep 10, 2008:

2:43 PM Changeset [4503] by Nicklas Nordborg
Fixes #1087: Update to Hibernate 3.3.0
2:43 PM Ticket #1087 (Update to Hibernate 3.3.0) closed by Nicklas Nordborg
fixed: (In [4503]) Fixes #1087: Update to Hibernate 3.3.0
1:55 PM Ticket #1032 (Apache server complains "Request-URI Too Large") updated by Johan Vallon-Christersson
Replying to jari: One 'other place' seems to be the filter …
11:52 AM Changeset [4502] by Nicklas Nordborg
Merged patch release 2.8.1 to the trunk.
11:40 AM Milestone BASE 2.8.1 completed
Revision Log: log:branches/2.8-stable@4493:4500
11:39 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.1 (diff)
11:32 AM Changeset [4501] by Nicklas Nordborg
Changes for future release 2.8.2
11:22 AM Changeset [4500] by Nicklas Nordborg
Tagging version 2.8.1
11:21 AM Changeset [4499] by Nicklas Nordborg
Preparing release 2.8.1
11:06 AM Changeset [4498] by Nicklas Nordborg
Fixes #1117: Job agents don't allow a job to be executed when the …
11:06 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) closed by Nicklas Nordborg
fixed: (In [4498]) Fixes #1117: Job agents don't allow a job to be executed …
9:54 AM Changeset [4497] by Nicklas Nordborg
Fixes #1115: Job agent can't execute plug-ins
9:54 AM Ticket #1115 (Job agent can't execute plug-ins) closed by Nicklas Nordborg
fixed: (In [4497]) Fixes #1115: Job agent can't execute plug-ins
9:52 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) updated by Nicklas Nordborg
Status, Owner changed
9:52 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) created by Nicklas Nordborg
When registering a job, the currently active project is also stored so …
9:25 AM Changeset [4496] by Nicklas Nordborg
Fixes #1116: Remove settings for jobagent.log and migration.log in …
9:25 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) closed by Nicklas Nordborg
fixed: (In [4496]) Fixes #1116: Remove settings for jobagent.log and …
9:16 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) updated by Nicklas Nordborg
Owner, Priority, Status changed
Seems like some errors related to #1115 are written to the log file as …
9:09 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) created by Nicklas Nordborg
The settings only cause problems even when they are not used. Anyone …
9:07 AM Ticket #1115 (Job agent can't execute plug-ins) updated by Nicklas Nordborg
Status, Owner changed
9:07 AM Ticket #1115 (Job agent can't execute plug-ins) created by Nicklas Nordborg
It doesn't work for any plug-in. If the job agent uses the …
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