Timeline



Sep 4, 2008:

8:55 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) created by Nicklas Nordborg
This ticket is similar to #1104.
8:54 PM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) created by Nicklas Nordborg
When a hybridization is created that is attached to an array slide it …
1:44 PM Changeset [4451] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items …
11:51 AM ReleaseProcedure edited by Nicklas Nordborg
(diff)
11:47 AM ReleaseProcedure edited by Nicklas Nordborg
(diff)
11:43 AM MinorReleaseTest created by Nicklas Nordborg
Adding test protocol for minor release
11:17 AM Changeset [4450] by Nicklas Nordborg
References #725: The test documentation is not historical. The 'roles' …
11:11 AM Changeset [4449] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items Do …
11:00 AM Changeset [4448] by Nicklas Nordborg
Do not share batch importers for array lims to EVERYONE.
8:36 AM Changeset [4447] by Nicklas Nordborg
References #1069: New mode for Import reporters to reporterlist - Add …

Sep 3, 2008:

7:40 PM DocBookSupport edited by Jari Häkkinen
Added Illumina mouse annotation file links. The files are needed … (diff)
3:47 PM Changeset [4446] by Jari Häkkinen
Addresses #725. Sample configs moved, restored them to the base wiki …
3:37 PM Changeset [4445] by Nicklas Nordborg
References #1077: Lowess normalization broken Updated images in …
2:27 PM Changeset [4444] by Jari Häkkinen
Addresses #1098.
2:14 PM Changeset [4443] by Jari Häkkinen
Minor change in text.
10:50 AM Changeset [4442] by Nicklas Nordborg
Fixes #1103: Give more examples in description for "Date format" …
10:50 AM Ticket #1103 (Give more examples in description for "Date format" pararameter) closed by Nicklas Nordborg
fixed: (In [4442]) Fixes #1103: Give more examples in description for "Date …
10:31 AM Changeset [4441] by Jari Häkkinen
Spell checked and changed column sample expressions to a table and …
9:44 AM Ticket #1103 (Give more examples in description for "Date format" pararameter) created by Nicklas Nordborg
See net.sf.basedb.plugins.util.Parameters.dateFormatParameter()

Sep 2, 2008:

1:46 PM Changeset [4440] by Nicklas Nordborg
Fixes #1095: The generic "Table exporter" should accept a prefix to …
1:46 PM Ticket #1095 (The generic "Table exporter" should accept a prefix to colum names) closed by Nicklas Nordborg
fixed: (In [4440]) Fixes #1095: The generic "Table exporter" should accept a …
1:22 PM Changeset [4439] by Nicklas Nordborg
Fixes #1096: html generation from docbook source generates an warning
1:22 PM Ticket #1096 (html generation from docbook source generates an warning) closed by Nicklas Nordborg
fixed: (In [4439]) Fixes #1096: html generation from docbook source generates …
1:12 PM Changeset [4438] by Nicklas Nordborg
Fixes #1091: <next> button in plug-in wizard scrolls out of view when …
1:12 PM Ticket #1091 (<next> button in plug-in wizard scrolls out of view when plug-in ...) closed by Nicklas Nordborg
fixed: (In [4438]) Fixes #1091: <next> button in plug-in wizard scrolls out …
11:20 AM Changeset [4437] by Nicklas Nordborg
Fixes #1012: Information on 'read' access to users needs clarification
11:20 AM Ticket #1012 (Information on 'read' access to users needs clarification) closed by Nicklas Nordborg
fixed: (In [4437]) Fixes #1012: Information on 'read' access to users needs …
10:54 AM Ticket #1063 (Read doc/src/docbook/overviewdoc/features.xml) closed by Nicklas Nordborg
fixed: (In [4436]) Fixes #1063: Read doc/src/docbook/overviewdoc/features.xml
10:54 AM Changeset [4436] by Nicklas Nordborg
Fixes #1063: Read doc/src/docbook/overviewdoc/features.xml
10:45 AM Ticket #1102 (Improve use of auto-detectable import plug-ins that can be used with ...) closed by Nicklas Nordborg
fixed: (In [4435]) Fixes #1102: Improve use of auto-detectable import …
10:45 AM Changeset [4435] by Nicklas Nordborg
Fixes #1102: Improve use of auto-detectable import plug-ins that can …
9:46 AM Changeset [4434] by Nicklas Nordborg
References #1028 :Plug-in for batch upload/modification of items …

Sep 1, 2008:

3:43 PM Ticket #1102 (Improve use of auto-detectable import plug-ins that can be used with ...) created by Jari Häkkinen
I noticed some undesired behaviour with the forthcoming batch …
3:35 PM Changeset [4433] by Jari Häkkinen
Ignore obsolete docs when calculating project stats.
2:32 PM DocBookSupport edited by Jari Häkkinen
(diff)
2:21 PM DocBookSupport edited by Jari Häkkinen
Added information about the batch importer sample file (diff)
2:12 PM DocBookSupport created by Jari Häkkinen
First draft to the BASE doc supplement page.
2:10 PM WikiStart edited by Jari Häkkinen
Added link to sample plug-in configuration files. (diff)
11:43 AM Changeset [4432] by Jari Häkkinen
Documentation change: Split import and export of data into two chapters.
10:09 AM Changeset [4431] by Jari Häkkinen
Addresses #1098.
9:03 AM Changeset [4430] by Jari Häkkinen
Corrected minor cut and paste error.
8:48 AM Changeset [4429] by Jari Häkkinen
Removed obsolete <ulink>.
8:09 AM Ticket #1100 (Remove unnecessary @SupressWarnings) closed by Nicklas Nordborg
fixed: (In [4428]) Fixes #1100: Remove unnecessary @SupressWarnings? And …
8:09 AM Changeset [4428] by Nicklas Nordborg
Fixes #1100: Remove unnecessary @SupressWarnings? And removed some …
8:02 AM Changeset [4427] by Nicklas Nordborg
Fixes #1101: Add a regexp for "empty line" to presets for "Ignore" in …
8:02 AM Ticket #1101 (Add a regexp for "empty line" to presets for "Ignore" in the the ...) closed by Nicklas Nordborg
fixed: (In [4427]) Fixes #1101: Add a regexp for "empty line" to presets for …

Aug 29, 2008:

3:02 PM Ticket #1101 (Add a regexp for "empty line" to presets for "Ignore" in the the ...) created by Nicklas Nordborg
[…] may work.
2:56 PM Changeset [4426] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items …
2:54 PM Ticket #1100 (Remove unnecessary @SupressWarnings) created by Nicklas Nordborg
The new Eclipse version (3.4) finds 10+ of those.
8:49 AM Changeset [4425] by Nicklas Nordborg
References #1093: Test-with-file function should try to match …

Aug 28, 2008:

11:43 AM Ticket #1099 (Link to log file from "View job" dialog) closed by Nicklas Nordborg
fixed: (In [4424]) Fixes #1099: Link to log file from "View job" dialog
11:43 AM Changeset [4424] by Nicklas Nordborg
Fixes #1099: Link to log file from "View job" dialog
9:37 AM Ticket #1099 (Link to log file from "View job" dialog) created by Nicklas Nordborg
New features was included in the core by #1064 (dry-run). This …
9:33 AM Changeset [4423] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items …
9:15 AM Changeset [4422] by Nicklas Nordborg
References #1093: Test-with-file function should try to match …

Aug 27, 2008:

4:22 PM Ticket #1098 (Read documentation for the batch uploaders) created by Jari Häkkinen
4:15 PM Changeset [4421] by Jari Häkkinen
Addresses #1063.
1:54 PM Changeset [4420] by Nicklas Nordborg
Fixes #1094: After expanding plug-in error details the + should change …
1:54 PM Ticket #1094 (After expanding plug-in error details the + should change to -) closed by Nicklas Nordborg
fixed: (In [4420]) Fixes #1094: After expanding plug-in error details the + …
1:08 PM Ticket #1097 (Outdated FAQs about raw data files) created by Jari Häkkinen
The answer to …
11:22 AM Ticket #1093 (Test-with-file function should try to match properties to file columns) closed by Nicklas Nordborg
fixed: (In [4419]) Fixes #1093: Test-with-file function should try to match …
11:22 AM Changeset [4419] by Nicklas Nordborg
Fixes #1093: Test-with-file function should try to match properties to …
11:01 AM Changeset [4418] by Jari Häkkinen
Changed chapter title to Developer overview of BASE2
8:53 AM Changeset [4417] by Nicklas Nordborg
Fix for incomplete changeset [4416]

Aug 26, 2008:

4:57 PM Changeset [4416] by Jari Häkkinen
Changed layout of FAQ section.
2:14 PM Ticket #1032 (Apache server complains "Request-URI Too Large") closed by Jari Häkkinen
fixed
11:54 AM Changeset [4415] by Jari Häkkinen
Removed causes to doc generation diagnostics.
11:43 AM Ticket #1096 (html generation from docbook source generates an warning) created by Jari Häkkinen
I suppose we some day should move to <xslt> as advised below […]
9:52 AM Changeset [4414] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items No …

Aug 25, 2008:

1:19 PM Changeset [4413] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items Made …
12:59 PM Ticket #1095 (The generic "Table exporter" should accept a prefix to colum names) created by Nicklas Nordborg
The current implementation uses the same column names in the exported …
12:56 PM Ticket #1094 (After expanding plug-in error details the + should change to -) created by Nicklas Nordborg
If an error is encountered during plug-in/job configuration it is …
12:18 PM Ticket #1093 (Test-with-file function should try to match properties to file columns) created by Nicklas Nordborg
This would be very handy if the file contains a lot of columns. The …
11:15 AM Ticket #1092 (Add listing of child items that are the same type as the parent) created by Jari Häkkinen
To be concrete I'll use Sample as example. Looking at one sample in …
10:43 AM Ticket #1091 (<next> button in plug-in wizard scrolls out of view when plug-in ...) created by Jari Häkkinen
When selecting a plug-in to run the description of the plug-in is in …
8:54 AM Changeset [4412] by Nicklas Nordborg
Fixes #1090: Import plug-ins ignores selected character set when …
8:54 AM Ticket #1090 (Import plug-ins ignores selected character set when validating files) closed by Nicklas Nordborg
fixed: (In [4412]) Fixes #1090: Import plug-ins ignores selected character …
8:28 AM Ticket #1090 (Import plug-ins ignores selected character set when validating files) created by Nicklas Nordborg
Upload a file with a data header that contains non-ascii characters …
8:01 AM Ticket #1089 (Test with file function doesn't remember selected character set) closed by Nicklas Nordborg
fixed: (In [4411]) Fixes #1089: Test with file function doesn't remember …
8:01 AM Changeset [4411] by Nicklas Nordborg
Fixes #1089: Test with file function doesn't remember selected …
7:53 AM Ticket #1089 (Test with file function doesn't remember selected character set) created by Nicklas Nordborg
Select any import plug-in which has a "Character set" parameter as one …

Aug 22, 2008:

11:05 AM Changeset [4410] by Nicklas Nordborg
References #1057: Make it possible to access and change web service …
10:53 AM Changeset [4409] by Nicklas Nordborg
References #1066: Reset all filters functionality request Fixed …
9:21 AM Changeset [4408] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items …
8:02 AM Changeset [4407] by Martin Svensson
Corrected a svn date-tag

Aug 21, 2008:

3:49 PM Changeset [4406] by Jari Häkkinen
Testing the Id tag.
1:09 PM Changeset [4405] by Nicklas Nordborg
Fixes #1014: Issues listing data after removing items This should fix …
1:09 PM Ticket #1014 (Issues listing data after removing items) closed by Nicklas Nordborg
fixed: (In [4405]) Fixes #1014: Issues listing data after removing items …
1:05 PM Changeset [4404] by Martin Svensson
References #725 Moved the rest of the old documents to the …
12:07 PM WikiStart edited by Martin Svensson
Added/updated some more information in the documentation list (diff)
11:45 AM Historical edited by Martin Svensson
Added an outdated list of development ideas (diff)
11:38 AM WikiStart edited by Martin Svensson
Bad spell (diff)
11:36 AM WikiStart edited by Martin Svensson
Moved old specification documents to the new historical page (diff)
11:33 AM Historical created by Martin Svensson
Created a historical page to put the old documentation on. The …
11:11 AM DeveloperInformation edited by Martin Svensson
Moved test procedures from Specifications to this site (diff)
9:50 AM Changeset [4403] by Jari Häkkinen
Fixes #925.
9:50 AM Ticket #925 (A candidate FAQ to Chapter 28. Reporters related FAQs) closed by Jari Häkkinen
fixed: (In [4403]) Fixes #925.
8:49 AM Changeset [4402] by Jari Häkkinen
Spllchecked and clarified one faq.

Aug 20, 2008:

4:36 PM Specifications/Test_procedures/Roles edited by Martin Svensson
Re-arranged the document and added a link to the old manuscript file (diff)
4:02 PM Specifications/Test_procedures edited by Martin Svensson
(diff)
3:58 PM Changeset [4401] by Jari Häkkinen
Improved text and minor change to section order.
3:45 PM Specifications/Test_procedures/Roles edited by Martin Svensson
Decided to only have the summary in wiki (diff)
2:56 PM Changeset [4400] by Jari Häkkinen
Fixes #597
2:56 PM Ticket #597 (Read "Appendix: web.xml reference") closed by Jari Häkkinen
fixed: (In [4400]) Fixes #597
2:12 PM Changeset [4399] by Nicklas Nordborg
References #1057: Make it possible to access and change web service …
2:12 PM Changeset [4398] by Nicklas Nordborg
Fixes #1057: Make it possible to access and change web service options …
2:12 PM Ticket #1057 (Make it possible to access and change web service options on client side) closed by Nicklas Nordborg
fixed: (In [4398]) Fixes #1057: Make it possible to access and change web …

Aug 19, 2008:

5:03 PM Changeset [4397] by Nicklas Nordborg
Fixes #1088: Upgrade to svnant 1.2
5:03 PM Ticket #1088 (Upgrade to svnant 1.2) closed by Nicklas Nordborg
fixed: (In [4397]) Fixes #1088: Upgrade to svnant 1.2
4:55 PM Ticket #1088 (Upgrade to svnant 1.2) created by Nicklas Nordborg
This is related to #1083 and will solve the requirement to use …
8:52 AM Specifications/Test_procedures edited by Martin Svensson
(diff)
8:36 AM Ticket #1086 (initdb.sh and other scripts should include all *.jar files on class ...) closed by Nicklas Nordborg
fixed: Seems to work fine on windows.

Aug 18, 2008:

4:37 PM Specifications/Test_procedures/Roles edited by Martin Svensson
Changed the level of some sections (diff)
4:35 PM Specifications/Test_procedures/Roles created by Martin Svensson
Created the document and the summary of the test procedures are written
1:00 PM Ticket #1082 (Make it possible to re-enter parameters for a failed job) closed by Nicklas Nordborg
fixed: I have not been able to find any plug-ins that have problems with …
12:52 PM Changeset [4396] by Nicklas Nordborg
References #1086:initdb.sh and other scripts should include all *.jar …
9:16 AM Ticket #1087 (Update to Hibernate 3.3.0) created by Nicklas Nordborg
9:15 AM Ticket #1086 (initdb.sh and other scripts should include all *.jar files on class ...) created by Nicklas Nordborg
With the current implementation the set_classpath.sh script has …

Aug 15, 2008:

3:48 PM Specifications/Test_procedures edited by Martin Svensson
Updated the link to mail archive (diff)
3:38 PM Specifications/Test_procedures created by Martin Svensson
First page of the test documents is transferred
1:10 PM Changeset [4395] by Martin Svensson
References #725 Transferred the getting_started document to …

Aug 13, 2008:

4:24 PM Changeset [4394] by Martin Svensson
References #727 Moved old, outdated documentation to a separate …
1:28 PM Ticket #1084 (Add logging to JarClassLoader) closed by Nicklas Nordborg
fixed
1:22 PM Changeset [4393] by Nicklas Nordborg
Fixes #1085: Implement JarClassLoader?.findResources method
1:22 PM Ticket #1085 (Implement JarClassLoader.findResources method) closed by Nicklas Nordborg
fixed: (In [4393]) Fixes #1085: Implement JarClassLoader?.findResources method
11:51 AM Changeset [4392] by Martin Svensson
Removed the docbook-documentation draft. The purpose of this draft is …

Aug 12, 2008:

2:40 PM Ticket #1085 (Implement JarClassLoader.findResources method) created by Nicklas Nordborg
The current implementation only has findResource() which doesn't work …
2:38 PM Changeset [4391] by Nicklas Nordborg
References #1084: Add logging to JarClassLoader?
1:05 PM Changeset [4390] by Nicklas Nordborg
Fixes #1043: JarClassLoader?.getInstance() doesn't create a new class …
1:05 PM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) closed by Nicklas Nordborg
fixed: (In [4390]) Fixes #1043: JarClassLoader?.getInstance() doesn't create a …
1:02 PM Ticket #1084 (Add logging to JarClassLoader) created by Nicklas Nordborg
This is very much needed to debug class loading problems with extensions
12:52 PM Changeset [4389] by Nicklas Nordborg
Fixes #1041: ZipException?: error in opening zip file in JarClassLoader?
12:52 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) closed by Nicklas Nordborg
fixed: (In [4389]) Fixes #1041: ZipException?: error in opening zip file in …
12:51 PM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) reopened by Nicklas Nordborg
This fix broke #1041. When that ticket has been fixed again this …
12:50 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) reopened by Nicklas Nordborg
This fix was broken by #1043. The JarClassLoader? should not throw an …
9:11 AM Changeset [4388] by Nicklas Nordborg
References #597: Write "Appendix: web.xml reference"

Aug 11, 2008:

11:09 AM Ticket #1033 (Mark columns containing unique information in list views) closed by Nicklas Nordborg
fixed: (In [4387]) Fixes #1033: Mark columns containing unique information in …
11:09 AM Changeset [4387] by Nicklas Nordborg
Fixes #1033: Mark columns containing unique information in list views
10:47 AM Ticket #1083 (Project doesn't compile when used with Eclipse 3.4) closed by Nicklas Nordborg
invalid: This problem was not really related to Eclipse or BASE, but to …
8:17 AM Ticket #1083 (Project doesn't compile when used with Eclipse 3.4) created by Nicklas Nordborg
There seems to be a problem with svn versions used by Eclipse and our …

Aug 8, 2008:

2:33 PM Changeset [4386] by Nicklas Nordborg
References #1033: Mark columns containing unique information in list …
1:47 PM Changeset [4385] by Nicklas Nordborg
References #1015: Add reporter list from tables that list …
12:12 PM Changeset [4384] by Nicklas Nordborg
References #1032: Apache server complains "Request-URI Too Large" …

Aug 7, 2008:

1:34 PM Changeset [4383] by Martin Svensson
Fixed javadoc warnings
9:02 AM Changeset [4382] by Nicklas Nordborg
Fixes #1069: New mode for Import reporters to reporterlist - Add …
9:02 AM Ticket #1069 (New mode for Import reporters to reporterlist - Add existing without ...) closed by Nicklas Nordborg
fixed: (In [4382]) Fixes #1069: New mode for Import reporters to reporterlist …

Aug 6, 2008:

1:37 PM Changeset [4381] by Nicklas Nordborg
Fixes #1081: Document how to configure Tomcat 6.0.18
1:37 PM Ticket #1081 (Document how to configure Tomcat 6.0.18) closed by Nicklas Nordborg
fixed: (In [4381]) Fixes #1081: Document how to configure Tomcat 6.0.18
1:30 PM Changeset [4380] by Nicklas Nordborg
Fixes #1064: Add support for dry-run to the plug-in system
1:30 PM Ticket #1064 (Add support for dry-run to the plug-in system) closed by Nicklas Nordborg
fixed: (In [4380]) Fixes #1064: Add support for dry-run to the plug-in system

Aug 5, 2008:

2:22 PM Changeset [4379] by Nicklas Nordborg
References #1082: Make it possible to re-enter parameters for a failed …
1:46 PM Changeset [4378] by Nicklas Nordborg
References #1064, #1082, #1050, #1024, #967 Updated UML diagrams as a …
9:10 AM Ticket #1082 (Make it possible to re-enter parameters for a failed job) created by Nicklas Nordborg
This is actually quite difficult. The main problem is that the …
8:43 AM Changeset [4377] by Nicklas Nordborg
References #1066: Reset all filters functionality request Added …
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