Timeline
Jul 4, 2008:
- 2:23 PM Ticket #1079 (Raw data import takes very long time to fail when user exceeds quota) updated by
- I just tested this on my development machine, and the failure happened …
- 2:04 PM Ticket #1066 (Reset all filters functionality request) closed by
- fixed: (In [4376]) Fixes #1066: Reset all filters functionality request
- 2:04 PM Changeset [4376] by
- Fixes #1066: Reset all filters functionality request
- 1:48 PM Ticket #1079 (Raw data import takes very long time to fail when user exceeds quota) created by
- Raw data imports that usually takes 30-40 seconds to successfully …
- 12:54 PM Ticket #1066 (Reset all filters functionality request) updated by
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Status, Priority, Milestone, Owner changed
- 12:15 PM Ticket #1078 (Copyright in 'About' BASE should contain year 2008) closed by
- fixed: (In [4375]) Fixes #1078: Copyright in 'About' BASE should contain year 2008
- 12:15 PM Changeset [4375] by
- Fixes #1078: Copyright in 'About' BASE should contain year 2008
- 12:15 PM Ticket #1078 (Copyright in 'About' BASE should contain year 2008) updated by
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Priority, Status, Owner, Milestone changed
- 12:14 PM Changeset [4374] by
- Fixes #1046: Remember closed/expanded node status in the hierarchical …
- 12:14 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) closed by
- fixed: (In [4374]) Fixes #1046: Remember closed/expanded node status in the …
- 12:13 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) updated by
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Milestone, Priority, Owner, Status changed
- 11:37 AM Changeset [4373] by
- Fixes #1071: Help text for default configuration selection for …
- 11:37 AM Ticket #1071 (Help text for default configuration selection for Base1PluginExecuter ...) closed by
- fixed: (In [4373]) Fixes #1071: Help text for default configuration selection …
- 11:37 AM Ticket #1071 (Help text for default configuration selection for Base1PluginExecuter ...) updated by
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Status, Priority, Owner, Milestone changed
- 11:23 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
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Description changed
- 11:22 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
- (In [4372]) References #1028: Plug-in for batch upload/modification of …
- 11:22 AM Changeset [4372] by
- References #1028: Plug-in for batch upload/modification of items …
Jul 3, 2008:
- 7:51 AM Changeset [4371] by
- Merged patch release 2.7.2 to the trunk.
Jul 2, 2008:
- 10:36 PM Ticket #1078 (Copyright in 'About' BASE should contain year 2008) created by
- 7:11 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) updated by
- Noticed that it is not remembered after logout/login. Could this be …
- 4:30 PM Milestone BASE 2.7.2 completed
- Bug fixes for 2.7.1. Revision log: log:branches/2.7-stable@4345:4369
- 4:29 PM DownloadPage edited by
- Releasing 2.7.2 (diff)
- 4:22 PM Changeset [4370] by
- Changes for the future release 2.7.3
- 3:55 PM Changeset [4369] by
- Tagging version 2.7.2
- 3:54 PM Changeset [4368] by
- Preparing release 2.7.2
- 3:51 PM Changeset [4367] by
- Fixes #1077. Changed help text on step parameter, also changed default …
- 3:51 PM Ticket #1077 (Lowess normalization broken) closed by
- fixed: (In [4367]) Fixes #1077. Changed help text on step parameter, also …
- 1:23 PM Changeset [4366] by
- References #1028: Plug-in for batch upload/modification of items …
- 1:23 PM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
- (In [4366]) References #1028: Plug-in for batch upload/modification of …
- 1:13 PM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
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Summary changed
- 10:33 AM Changeset [4365] by
- Minor changes to text.
- 9:04 AM Changeset [4364] by
- References #1077: Lowess normalization broken Added warning in update …
- 9:04 AM Ticket #1077 (Lowess normalization broken) updated by
- (In [4364]) References #1077: Lowess normalization broken Added …
- 8:56 AM Changeset [4363] by
- Addresses #1077. A couple of more issues found. Further quality …
- 8:56 AM Ticket #1077 (Lowess normalization broken) updated by
- (In [4363]) Addresses #1077. A couple of more issues found. Further …
- 8:47 AM Ticket #1077 (Lowess normalization broken) reopened by
- 8:47 AM Ticket #1077 (Lowess normalization broken) updated by
- Further issues found, reopening this ticket.
Jul 1, 2008:
- 4:30 PM Changeset [4362] by
- Fixes #1074.
- 4:30 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) closed by
- fixed: (In [4362]) Fixes #1074.
- 4:30 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) updated by
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Description changed
- 4:25 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) updated by
- BASE 1 field type string and text will be parsed and new line is …
- 1:44 PM Ticket #1077 (Lowess normalization broken) updated by
- (In [4361]) References #1077: Lowess normalization broken Added …
- 1:43 PM Changeset [4361] by
- References #1077: Lowess normalization broken Added script for …
- 11:59 AM Changeset [4360] by
- Fixes #1077.
- 11:59 AM Ticket #1077 (Lowess normalization broken) closed by
- fixed: (In [4360]) Fixes #1077.
- 11:42 AM Ticket #1077 (Lowess normalization broken) updated by
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Owner, Status, Description changed
- 11:40 AM Changeset [4359] by
- Fixes #1076: Backwards incompatible change in MedianRatioNormalization …
- 11:40 AM Ticket #1076 (Backwards incompatible change in MedianRatioNormalization plugin) closed by
- fixed: (In [4359]) Fixes #1076: Backwards incompatible change in …
- 11:26 AM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) updated by
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Summary changed
- 11:16 AM Ticket #1076 (Backwards incompatible change in MedianRatioNormalization plugin) updated by
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Owner, Status changed
- 11:10 AM Ticket #1077 (Lowess normalization broken) created by
- This problem affects all versions of BASE2. As pointed out in the …
- 11:08 AM Changeset [4358] by
- Fixes #1075: Lowess normaliztion fails on trunk but works on latest …
- 11:08 AM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) closed by
- fixed: (In [4358]) Fixes #1075: Lowess normaliztion fails on trunk but works …
- 9:51 AM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) updated by
- The same problem exists in the Median-ratio normalization plug-in.
- 9:19 AM Ticket #1076 (Backwards incompatible change in MedianRatioNormalization plugin) created by
- The fix to #1030 which was included in the 2.7.1 release, removed the …
- 8:49 AM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) updated by
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Owner, Status, Component changed
I get the same error. Looking at the SQL, it seems like the table …
Jun 30, 2008:
- 10:51 PM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) created by
- Running trunk version lowess on my development machine creates the …
- 7:31 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) updated by
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Status changed
- 7:31 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) created by
- Text field parameters in BASE1 are treated specially in that they are …
- 2:48 PM Changeset [4357] by
- References #1072: Core plug-in versions should follow BASE versions …
- 2:48 PM Ticket #1072 (Core plug-in versions should follow BASE versions) updated by
- (In [4357]) References #1072: Core plug-in versions should follow BASE …
- 2:47 PM Ticket #1072 (Core plug-in versions should follow BASE versions) closed by
- fixed: (In [4356]) Fixes #1072: Core plug-in versions should follow BASE versions
- 2:47 PM Changeset [4356] by
- Fixes #1072: Core plug-in versions should follow BASE versions
- 2:32 PM Ticket #1072 (Core plug-in versions should follow BASE versions) updated by
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Owner, Status changed
- 2:32 PM Ticket #1073 (Store current plug-in version when running a job) closed by
- fixed: (In [4355]) Fixes #1073: Store current plug-in version when running a job
- 2:32 PM Changeset [4355] by
- Fixes #1073: Store current plug-in version when running a job
- 1:55 PM Ticket #1073 (Store current plug-in version when running a job) updated by
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Status, Owner changed
- 11:10 AM Ticket #1073 (Store current plug-in version when running a job) created by
- It may be useful to know the version number of a plug-in that was used …
- 11:06 AM Ticket #1072 (Core plug-in versions should follow BASE versions) created by
- The version number of the core plug-ins as reported by the …
- 8:41 AM Changeset [4354] by
- Fixes #1070: Excess memory usage when creating root bioassayset with …
- 8:41 AM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) closed by
- fixed: (In [4354]) Fixes #1070: Excess memory usage when creating root …
Jun 27, 2008:
- 2:45 PM Ticket #1071 (Help text for default configuration selection for Base1PluginExecuter ...) created by
- Selecting the Base1PluginExecuter as plug-in to run will show the …
- 2:34 PM Changeset [4353] by
- References #1070: Excess memory usage when creating root bioassayset …
- 2:34 PM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) updated by
- (In [4353]) References #1070: Excess memory usage when creating root …
- 2:34 PM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) updated by
- I think this may be fixed now. The memory usage is is much lower. Here …
- 9:24 AM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) updated by
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Status, Owner changed
Jun 26, 2008:
- 8:38 PM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) created by
- Although the implementation is correct I tag this as a defect since …
- 11:11 AM Ticket #1069 (New mode for Import reporters to reporterlist - Add existing without ...) created by
- When importing reporters to a reporterlist from file (using Reporter …
- 9:51 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) closed by
- fixed: (In [4352]) Fixes #1068: Sorting spotdata on a formula-based column …
- 9:51 AM Changeset [4352] by
- Fixes #1068: Sorting spotdata on a formula-based column where the …
- 9:33 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) updated by
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Status, Owner changed
There is a similar problem in Experiment explorer: […] - 9:32 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) created by
- […]
- 9:30 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) closed by
- duplicate: I think the fix in #1067 is better. * Using CAST in the SQL will …
- 9:25 AM Changeset [4351] by
- Fixes #1067: Can't display spot-data columns that are based on …
- 9:25 AM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) closed by
- fixed: (In [4351]) Fixes #1067: Can't display spot-data columns that are …
Jun 25, 2008:
- 3:42 PM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) updated by
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Description changed
- 3:42 PM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) created by
- This is the same problem as in ticket #1065. I have been investigating …
- 1:02 PM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) updated by
- I have now checked MySQL also and the result is different from …
- 12:47 PM Ticket #1066 (Reset all filters functionality request) updated by
- I think we can have two levels: * Reset in-memory settings * Reset …
- 12:28 PM Ticket #1066 (Reset all filters functionality request) created by
- In some cases filtering of list views and inclusion of columns to list …
- 12:13 PM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) updated by
- I made a quick check and the result is that the return type is varying …
- 11:50 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) updated by
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Summary, Priority, Milestone, Component changed
It seems like thechromosomecolumn in question comes from a formula … - 10:54 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) created by
- See also #1067. I was looking at spot data and with a few columns …
- 9:57 AM Ticket #1064 (Add support for dry-run to the plug-in system) created by
- There is a wish in ticket #1028 that it should be possible to run a …
Jun 24, 2008:
- 3:01 PM Ticket #1063 (Read doc/src/docbook/overviewdoc/features.xml) updated by
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Summary changed
- 3:00 PM Changeset [4350] by
- Fixes #1062.
- 3:00 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) closed by
- fixed: (In [4350]) Fixes #1062.
Jun 23, 2008:
- 10:35 PM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
-
Description changed
Major revision of the user perspective, and the sample openoffice is … - 9:32 PM Ticket #1063 (Read doc/src/docbook/overviewdoc/features.xml) created by
- Was: Add information about supported microarray platforms to web site …
- 9:28 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) updated by
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Status changed
- 9:28 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) created by
- 2:43 PM Ticket #1037 (Add 'id' column to all list pages) updated by
- (In [4349]) References #1037: Add 'id' column to all list pages Fixed …
- 2:43 PM Changeset [4349] by
- References #1037: Add 'id' column to all list pages Fixed incorrect …
- 8:07 AM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) closed by
- invalid: I don't think this has anything to do with the 2.7.1 update. It is …
- 7:56 AM Ticket #1061 (Error: Run plugin: Formula intensity calculator) closed by
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invalid: You need to give the
base2@myserver.eduuser access to the dynamic …
Jun 19, 2008:
- 11:37 PM Ticket #1061 (Error: Run plugin: Formula intensity calculator) created by
- When attempting to run this plugin, I get this MySQL error: CREATE …
- 4:34 PM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) created by
- After updating to BASE 2.7.1 (Lund onk installation) overview plots …
- 10:46 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by
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Description changed
Updated spreadsheet, sample information to the labeled extracts step … - 8:29 AM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) updated by
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Summary, Version, Priority changed
I have checked with IBM's java runtime (version 6) and I get the same …
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