Timeline
Jun 12, 2008:
- 11:22 AM Changeset [4332] by
- References #1037 Most of the list pages can now show an item's ID.
Jun 11, 2008:
- 5:16 PM Ticket #1056 (Disk usage does not seem to report disk usage properly for experiments) created by
- Defect? Experiments in BASE2 with lots of bioassaysets (and …
- 2:47 PM Ticket #1055 (Messaging system) created by
- The messaging system should allow users with proper credential to send …
- 9:12 AM Changeset [4331] by
- References #1037 The most important list pages are done.
Jun 10, 2008:
- 3:59 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) closed by
- fixed: (In [4330]) Fixes #1010 Display progress reporter for plug-ins that …
- 3:59 PM Changeset [4330] by
- Fixes #1010 Display progress reporter for plug-ins that are executing …
Jun 5, 2008:
- 2:45 PM Ticket #1054 (Make it possible for the annotation importer to identify items by ...) created by
- The current implementation only supports 'name' or 'externalId' as …
- 8:12 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) closed by
- wontfix: I have found what you are talking about. The issue here is that when …
- 8:01 AM Changeset [4329] by
- Fixes #1047: Type.BOOLEAN.parseString() doesn't convert strings as expected
- 8:01 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) closed by
- fixed: (In [4329]) Fixes #1047: Type.BOOLEAN.parseString() doesn't convert …
- 7:58 AM Changeset [4328] by
- Fixes #1053: Values.getBoolean() is case-sensitive
- 7:58 AM Ticket #1053 (Values.getBoolean() is case-sensitive) closed by
- fixed: (In [4328]) Fixes #1053: Values.getBoolean() is case-sensitive
- 7:55 AM Ticket #1053 (Values.getBoolean() is case-sensitive) created by
- Trying to convert string values to boolean. Using lowercase strings, …
Jun 4, 2008:
- 1:35 PM Ticket #1052 (Core analysis plug-ins need to be aware of bioassaysets that use data ...) created by
- This is related to #1029 and depends on #1050. All existing core …
- 1:29 PM Ticket #1051 (Add support in the GUI for accssing files used to store analysed data) created by
- This is related to to #1029 and depends on #1050. The first thing is …
- 1:22 PM Ticket #1050 (Add core support for storing analysed data in files instead of in the ...) created by
- This is related to #1029, but is only about changes needed in the core …
- 11:45 AM Ticket #1049 (Add the 'quadratic mean' to available Avg. method's for formulas.) created by
- http://en.wikipedia.org/wiki/Quadratic_mean
- 10:56 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) created by
- When testing with file (parsing file) the rows above defined data …
- 10:08 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) created by
- When importing Raw data (type = Agilent), data from the file is mapped …
Jun 3, 2008:
- 4:14 PM Changeset [4327] by
- References #1010 Using the SimpleProgressReporter? to get progress of …
- 3:07 PM Changeset [4326] by
- Fixes #1045. References #1016.
- 3:07 PM Ticket #1045 (File list view creates an exception) closed by
- fixed: (In [4326]) Fixes #1045. References #1016.
- 2:00 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) created by
- Currently, closed nodes in the hierarchical tree of Bioassay sets (in …
- 11:25 AM Changeset [4325] by
- Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
- 11:25 AM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) closed by
- fixed: (In [4325]) Fixes #1038: Provide manual parameter for 'spotsize' in …
- 11:07 AM Ticket #1045 (File list view creates an exception) created by
- When I try to view my files as ordinary user I get the below …
- 10:58 AM Changeset [4324] by
- Fixes #532.
- 10:58 AM Ticket #532 (Read "Jobs" section) closed by
- fixed: (In [4324]) Fixes #532.
- 9:41 AM Ticket #1036 (Implement 'service' extension point) closed by
- fixed: Seems to be working fine right now.
Jun 2, 2008:
- 1:11 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') closed by
- worksforme: It is a browser-related problem.
- 12:22 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') created by
- I am not sure if this should be in this ticket system or baseplugins …
May 30, 2008:
- 12:06 PM Changeset [4323] by
- Fixes #1043: JarClassLoader?.getInstance() doesn't create a new class …
- 12:06 PM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) closed by
- fixed: (In [4323]) Fixes #1043: JarClassLoader?.getInstance() doesn't create a …
- 11:22 AM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) created by
- The documentation on the method says that a new class loader should be …
- 11:15 AM Changeset [4322] by
- Fixes #1042: Improve error handling in the extensions system
- 11:15 AM Ticket #1042 (Improve error handling in the extensions system) closed by
- fixed: (In [4322]) Fixes #1042: Improve error handling in the extensions system
- 10:58 AM Ticket #1042 (Improve error handling in the extensions system) created by
- The extensions system contains code like the example below in several …
May 29, 2008:
- 3:02 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) closed by
- fixed: (In [4321]) Fixes #1041: ZipException?: error in opening zip file in …
- 3:02 PM Changeset [4321] by
- Fixes #1041: ZipException?: error in opening zip file in JarClassLoader? …
- 2:43 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) created by
- Here is the interesting parts of the stacktrace: […] The starting …
- 1:39 PM Changeset [4320] by
- References #1036: Implement 'service' extension point Now it is ready …
- 11:38 AM Changeset [4319] by
- Fixes #1040: Exceptions when stopping Tomcat
- 11:38 AM Ticket #1040 (Exceptions when stopping Tomcat) closed by
- fixed: (In [4319]) Fixes #1040: Exceptions when stopping Tomcat
- 11:11 AM Ticket #1040 (Exceptions when stopping Tomcat) created by
- This has been around for a long time... When stopping Tomcat using the …
May 28, 2008:
- 8:21 PM Ticket #408 (Implement FTP server) closed by
- invalid: Moved to http://baseplugins.thep.lu.se/wiki/net.sf.basedb.ftp
- 8:01 AM Ticket #1039 (link to list of plugins is broken) closed by
- fixed: The link is fixed
- 8:00 AM WikiStart edited by
- Repaired a broken link (diff)
- 12:15 AM Ticket #1039 (link to list of plugins is broken) created by
- Link on first page core plug-ins with sample configuration files …
May 27, 2008:
- 12:21 PM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) created by
- Since the 'spotsize' column wasn't added until BASE 2.7 (#999), many …
- 11:55 AM Ticket #1037 (Add 'id' column to all list pages) created by
- The internal ID of items is not visible anywhere in the web interface. …
- 10:16 AM Ticket #639 (exportPureMatrix method) closed by
- fixed: changeset:4318 adds functionality to export 2-channel data. ch1/ch2 …
- 10:08 AM Changeset [4318] by
- Addresses #639. Exporting plain matrix for 1 and 2 channel data.
- 9:36 AM Ticket #1036 (Implement 'service' extension point) created by
- It could be useful to have an extension point that can be used for …
- 8:44 AM Changeset [4317] by
- Fixes #1022: Add support for using regular expressions in queries
- 8:44 AM Ticket #1022 (Add support for using regular expressions in queries) closed by
- fixed: (In [4317]) Fixes #1022: Add support for using regular expressions in …
- 8:17 AM Changeset [4316] by
- Removed obsolete/stray code.
May 26, 2008:
- 2:12 PM Changeset [4315] by
- Fixes #1035: Exception when applying filter on multiple Item type in …
- 2:12 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) closed by
- fixed: (In [4315]) Fixes #1035: Exception when applying filter on multiple …
- 1:01 PM Ticket #967 (Assign the parent directory permissions to new files/directories) closed by
- fixed: (In [4314]) Fixes #967: Assign the parent directory permissions to new …
- 1:01 PM Changeset [4314] by
- Fixes #967: Assign the parent directory permissions to new …
- 11:52 AM Changeset [4313] by
- References #981: Share all subdirectories and files when sharing a …
- 9:31 AM Changeset [4312] by
- Fixes #981: Share all subdirectories and files when sharing a directory
- 9:31 AM Ticket #981 (Share all subdirectories and files when sharing a directory) closed by
- fixed: (In [4312]) Fixes #981: Share all subdirectories and files when …
May 23, 2008:
- 3:12 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) created by
- Selecting to filter on two Item types in Trashcan table view, e.g., …
- 2:24 PM Changeset [4311] by
- Fixes #1024: Allow users to select a specific job-agent when creating …
- 2:24 PM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) closed by
- fixed: (In [4311]) Fixes #1024: Allow users to select a specific job-agent …
- 2:08 PM Changeset [4310] by
- Fixes #1034
- 2:08 PM Ticket #1034 (Normalization: Lowess. Add information about reporter lists to plug-in ...) closed by
- fixed: (In [4310]) Fixes #1034
- 2:02 PM Ticket #1034 (Normalization: Lowess. Add information about reporter lists to plug-in ...) created by
- 11:39 AM Ticket #1033 (Mark columns containing unique information in list views) created by
- It would be nice if the web interface could highlight information that …
- 11:33 AM Ticket #1032 (Apache server complains "Request-URI Too Large") created by
- In some cases the Apache server complains in the URI size. If one …
May 22, 2008:
- 3:51 PM Changeset [4309] by
- References #532. Chapter is ready to be read.
May 21, 2008:
- 10:49 PM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) closed by
- fixed: (In [4308]) Fixes #1030. User selects scaling/subtraction depending on …
- 10:49 PM Changeset [4308] by
- Fixes #1030. User selects scaling/subtraction depending on whether …
- 5:29 PM Changeset [4307] by
- References #532. Written main part of the Job section
- 3:39 PM Changeset [4306] by
- References #1015: Add reporter list from tables that list …
- 1:22 PM Ticket #1031 (Filtering with selection lists) closed by
- invalid: It is intentional and needed if using only a keybord and follows the …
- 1:13 PM Ticket #1031 (Filtering with selection lists) created by
- The selection list filters in list views works if the green check box …
- 1:11 PM Changeset [4305] by
- References #1015: Add reporter list from tables that list …
- 8:47 AM Ticket #1027 (Annotation importer should be able to remove annotations) closed by
- fixed: (In [4304]) Fixes #1027: Annotation importer should be able to remove …
- 8:47 AM Changeset [4304] by
- Fixes #1027: Annotation importer should be able to remove annotations
May 20, 2008:
- 10:54 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) created by
- The current implementation translate the data to zero median for each …
May 19, 2008:
- 2:48 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) closed by
- fixed: (In [4303]) Fixes #987 NullPointerException? in "Test with file" …
- 2:48 PM Changeset [4303] by
- Fixes #987 NullPointerException? in "Test with file" function if no …
- 2:07 PM Changeset [4302] by
- References #1016: Filter table using a reporter list I think this …
May 16, 2008:
- 11:40 AM Changeset [4301] by
- References #1019: Reporter list manager - Create reporter list using …
- 11:17 AM Changeset [4300] by
- Removed debug-code
May 15, 2008:
- 11:31 AM Ticket #978 (Unzipped files never inherit file type specified during upload) closed by
- wontfix
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by
- worksforme
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) reopened by
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by
- wontfix: We'll close this ticket for now since we cannot reproduce the problem.
- 11:16 AM Ticket #897 (Potential temporary directory clash for plugins running through job agents) closed by
- wontfix: This issue is something that the administrator and plugin programmer …
- 11:00 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) created by
- Read the attached file for details. Things to do: - Generate sample …
- 10:52 AM Ticket #1028 (Plug-in for batch upload/modification of items) created by
- References to the latest versions of files (please keep this list up …
May 14, 2008:
- 10:40 AM Ticket #1020 (A reporter list should hold the number of reporters in it) closed by
- fixed: (In [4299]) Fixes #1020: A reporter list should hold the number of …
- 10:40 AM Changeset [4299] by
- Fixes #1020: A reporter list should hold the number of reporters in it
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