Timeline



Jun 2, 2008:

1:11 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Nicklas Nordborg
Milestone changed
1:11 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') closed by Nicklas Nordborg
worksforme: It is a browser-related problem.
12:22 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') created by Jari Häkkinen
I am not sure if this should be in this ticket system or baseplugins …
11:12 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) updated by Jari Häkkinen
Status changed

May 30, 2008:

12:13 PM services.xml attached to Ticket #1036 by Nicklas Nordborg
Example file for dummy services
12:06 PM Changeset [4323] by Nicklas Nordborg
Fixes #1043: JarClassLoader.getInstance() doesn't create a new class …
12:06 PM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) closed by Nicklas Nordborg
fixed: (In [4323]) Fixes #1043: JarClassLoader.getInstance() doesn't create a …
11:22 AM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) updated by Nicklas Nordborg
Status changed
11:22 AM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) created by Nicklas Nordborg
The documentation on the method says that a new class loader should be …
11:15 AM Changeset [4322] by Nicklas Nordborg
Fixes #1042: Improve error handling in the extensions system
11:15 AM Ticket #1042 (Improve error handling in the extensions system) closed by Nicklas Nordborg
fixed: (In [4322]) Fixes #1042: Improve error handling in the extensions system
10:58 AM Ticket #1042 (Improve error handling in the extensions system) updated by Nicklas Nordborg
Status changed
10:58 AM Ticket #1042 (Improve error handling in the extensions system) created by Nicklas Nordborg
The extensions system contains code like the example below in several …

May 29, 2008:

3:02 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) closed by Nicklas Nordborg
fixed: (In [4321]) Fixes #1041: ZipException: error in opening zip file in …
3:02 PM Changeset [4321] by Nicklas Nordborg
Fixes #1041: ZipException: error in opening zip file in JarClassLoader
2:43 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) updated by Nicklas Nordborg
Status changed
2:43 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) created by Nicklas Nordborg
Here is the interesting parts of the stacktrace: […] The starting …
1:39 PM Changeset [4320] by Nicklas Nordborg
References #1036: Implement 'service' extension point Now it is ready …
1:39 PM Ticket #1036 (Implement 'service' extension point) updated by Nicklas Nordborg
(In [4320]) References #1036: Implement 'service' extension point Now …
11:38 AM Changeset [4319] by Nicklas Nordborg
Fixes #1040: Exceptions when stopping Tomcat
11:38 AM Ticket #1040 (Exceptions when stopping Tomcat) closed by Nicklas Nordborg
fixed: (In [4319]) Fixes #1040: Exceptions when stopping Tomcat
11:25 AM Ticket #1040 (Exceptions when stopping Tomcat) updated by Nicklas Nordborg
Status changed
11:11 AM Ticket #1040 (Exceptions when stopping Tomcat) created by Nicklas Nordborg
This has been around for a long time... When stopping Tomcat using the …

May 28, 2008:

8:21 PM Ticket #1036 (Implement 'service' extension point) updated by Nicklas Nordborg
Status, Owner, Milestone changed
8:21 PM Ticket #408 (Implement FTP server) closed by Nicklas Nordborg
invalid: Moved to http://baseplugins.thep.lu.se/wiki/net.sf.basedb.ftp
8:01 AM Ticket #1039 (link to list of plugins is broken) closed by Martin Svensson
fixed: The link is fixed
8:00 AM WikiStart edited by Martin Svensson
Repaired a broken link (diff)
12:15 AM Ticket #1039 (link to list of plugins is broken) created by Peter Johansson
Link on first page core plug-ins with sample configuration files

May 27, 2008:

12:21 PM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) created by Nicklas Nordborg
Since the 'spotsize' column wasn't added until BASE 2.7 (#999), many …
12:05 PM Ticket #1037 (Add 'id' column to all list pages) updated by Nicklas Nordborg
The most important list pages are the biomaterials section (biosource, …
11:55 AM Ticket #1037 (Add 'id' column to all list pages) created by Nicklas Nordborg
The internal ID of items is not visible anywhere in the web interface. …
11:55 AM Ticket #979 (Biomaterial LIMS) updated by Johan Vallon-Christersson
Owner changed
11:55 AM Ticket #979 (Biomaterial LIMS) updated by Johan Vallon-Christersson
Milestone changed
10:16 AM Ticket #639 (exportPureMatrix method) closed by Jari Häkkinen
fixed: changeset:4318 adds functionality to export 2-channel data. ch1/ch2 …
10:08 AM Changeset [4318] by Jari Häkkinen
Addresses #639. Exporting plain matrix for 1 and 2 channel data.
10:08 AM Ticket #639 (exportPureMatrix method) updated by Jari Häkkinen
(In [4318]) Addresses #639. Exporting plain matrix for 1 and 2 channel …
9:36 AM Ticket #1036 (Implement 'service' extension point) created by Nicklas Nordborg
It could be useful to have an extension point that can be used for …
9:14 AM Ticket #1032 (Apache server complains "Request-URI Too Large") updated by Nicklas Nordborg
Ticket #896 solved a similar problem and also contains some background …
8:44 AM Changeset [4317] by Nicklas Nordborg
Fixes #1022: Add support for using regular expressions in queries
8:44 AM Ticket #1022 (Add support for using regular expressions in queries) closed by Nicklas Nordborg
fixed: (In [4317]) Fixes #1022: Add support for using regular expressions in …
8:17 AM Changeset [4316] by Jari Häkkinen
Removed obsolete/stray code.

May 26, 2008:

2:15 PM Ticket #1022 (Add support for using regular expressions in queries) updated by Nicklas Nordborg
Milestone, Status, Owner changed
2:12 PM Changeset [4315] by Nicklas Nordborg
Fixes #1035: Exception when applying filter on multiple Item type in …
2:12 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) closed by Nicklas Nordborg
fixed: (In [4315]) Fixes #1035: Exception when applying filter on multiple …
2:10 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) updated by Nicklas Nordborg
Summary changed
1:11 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) updated by Nicklas Nordborg
Version, Milestone, Owner, Status, Summary, Priority changed
This problem is present in lists with multiple item types: * View -> …
1:01 PM Ticket #967 (Assign the parent directory permissions to new files/directories) closed by Nicklas Nordborg
fixed: (In [4314]) Fixes #967: Assign the parent directory permissions to new …
1:01 PM Changeset [4314] by Nicklas Nordborg
Fixes #967: Assign the parent directory permissions to new …
11:52 AM Ticket #981 (Share all subdirectories and files when sharing a directory) updated by Nicklas Nordborg
(In [4313]) References #981: Share all subdirectories and files when …
11:52 AM Changeset [4313] by Nicklas Nordborg
References #981: Share all subdirectories and files when sharing a …
9:31 AM Changeset [4312] by Nicklas Nordborg
Fixes #981: Share all subdirectories and files when sharing a directory
9:31 AM Ticket #981 (Share all subdirectories and files when sharing a directory) closed by Nicklas Nordborg
fixed: (In [4312]) Fixes #981: Share all subdirectories and files when …
9:11 AM Ticket #639 (exportPureMatrix method) updated by Jari Häkkinen
Description changed
Just a note to tell you all that I am working on this now.
8:41 AM Ticket #408 (Implement FTP server) updated by Nicklas Nordborg
I have been playing with this a little bit the last week. It was not …
8:22 AM Ticket #981 (Share all subdirectories and files when sharing a directory) updated by Nicklas Nordborg
Milestone, Owner, Status, Description, Summary, Priority changed
8:20 AM Ticket #967 (Assign the parent directory permissions to new files/directories) updated by Nicklas Nordborg
Owner, Summary, Status, Milestone changed
This would be very useful once FTP access (#408) is implemented. It is …

May 23, 2008:

3:12 PM Ticket #1035 (Exception when applying filter on multiple Item type in some list views) created by Johan Vallon-Christersson
Selecting to filter on two Item types in Trashcan table view, e.g., …
2:24 PM Changeset [4311] by Nicklas Nordborg
Fixes #1024: Allow users to select a specific job-agent when creating …
2:24 PM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) closed by Nicklas Nordborg
fixed: (In [4311]) Fixes #1024: Allow users to select a specific job-agent …
2:08 PM Changeset [4310] by Jari Häkkinen
Fixes #1034
2:08 PM Ticket #1034 (Normalization: Lowess. Add information about reporter lists to plug-in ...) closed by Jari Häkkinen
fixed: (In [4310]) Fixes #1034
2:02 PM Ticket #1034 (Normalization: Lowess. Add information about reporter lists to plug-in ...) updated by Jari Häkkinen
Status changed
2:02 PM Ticket #1034 (Normalization: Lowess. Add information about reporter lists to plug-in ...) created by Jari Häkkinen
11:39 AM Ticket #1033 (Mark columns containing unique information in list views) created by Jari Häkkinen
It would be nice if the web interface could highlight information that …
11:33 AM Ticket #1032 (Apache server complains "Request-URI Too Large") created by Jari Häkkinen
In some cases the Apache server complains in the URI size. If one …
9:33 AM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) updated by Nicklas Nordborg
Milestone, Status, Owner changed

May 22, 2008:

3:54 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) updated by Martin Svensson
Status, Owner changed
3:52 PM Ticket #532 (Read "Jobs" section) updated by Martin Svensson
Status, Summary, Priority, Owner changed
3:51 PM Changeset [4309] by Martin Svensson
References #532. Chapter is ready to be read.
3:51 PM Ticket #532 (Read "Jobs" section) updated by Martin Svensson
(In [4309]) References #532. Chapter is ready to be read.

May 21, 2008:

10:49 PM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) closed by Jari Häkkinen
fixed: (In [4308]) Fixes #1030. User selects scaling/subtraction depending on …
10:49 PM Changeset [4308] by Jari Häkkinen
Fixes #1030. User selects scaling/subtraction depending on whether …
10:47 PM Ticket #1031 (Filtering with selection lists) updated by Jari Häkkinen
Replying to nicklas: > It is intentional and needed if …
5:29 PM Changeset [4307] by Martin Svensson
References #532. Written main part of the Job section
5:29 PM Ticket #532 (Read "Jobs" section) updated by Martin Svensson
(In [4307]) References #532. Written main part of the Job section
3:39 PM Changeset [4306] by Nicklas Nordborg
References #1015: Add reporter list from tables that list …
3:39 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Nicklas Nordborg
(In [4306]) References #1015: Add reporter list from tables that list …
1:23 PM Ticket #1031 (Filtering with selection lists) updated by Nicklas Nordborg
Milestone changed
1:22 PM Ticket #1031 (Filtering with selection lists) closed by Nicklas Nordborg
invalid: It is intentional and needed if using only a keybord and follows the …
1:13 PM Ticket #1031 (Filtering with selection lists) created by Jari Häkkinen
The selection list filters in list views works if the green check box …
1:11 PM Changeset [4305] by Nicklas Nordborg
References #1015: Add reporter list from tables that list …
1:11 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Nicklas Nordborg
(In [4305]) References #1015: Add reporter list from tables that list …
9:04 AM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Nicklas Nordborg
Status, Owner changed
8:47 AM Ticket #1027 (Annotation importer should be able to remove annotations) closed by Nicklas Nordborg
fixed: (In [4304]) Fixes #1027: Annotation importer should be able to remove …
8:47 AM Changeset [4304] by Nicklas Nordborg
Fixes #1027: Annotation importer should be able to remove annotations
7:43 AM Ticket #1027 (Annotation importer should be able to remove annotations) updated by Nicklas Nordborg
Status, Owner changed

May 20, 2008:

10:54 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Jari Häkkinen
Status changed
10:54 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) created by Jari Häkkinen
The current implementation translate the data to zero median for each …

May 19, 2008:

4:07 PM Ticket #532 (Read "Jobs" section) updated by Martin Svensson
Status, Milestone, Owner changed
4:05 PM Ticket #617 (Write plate management in array LIMS) updated by Martin Svensson
Owner, Status changed
2:48 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) closed by Martin Svensson
fixed: (In [4303]) Fixes #987 NullPointerException in "Test with file" …
2:48 PM Changeset [4303] by Martin Svensson
Fixes #987 NullPointerException in "Test with file" function if no …
2:07 PM Changeset [4302] by Nicklas Nordborg
References #1016: Filter table using a reporter list I think this …
2:07 PM Ticket #1016 (Filter table using a reporter list) updated by Nicklas Nordborg
(In [4302]) References #1016: Filter table using a reporter list I …

May 16, 2008:

12:08 PM Ticket #1016 (Filter table using a reporter list) updated by Nicklas Nordborg
Owner, Status changed
11:40 AM Changeset [4301] by Nicklas Nordborg
References #1019: Reporter list manager - Create reporter list using …
11:40 AM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) updated by Nicklas Nordborg
(In [4301]) References #1019: Reporter list manager - Create reporter …
11:17 AM Changeset [4300] by Martin Svensson
Removed debug-code

May 15, 2008:

2:15 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Martin Svensson
Owner, Status changed
12:00 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Jari Häkkinen
Priority changed
11:59 AM Ticket #1012 (Information on 'read' access to users needs clarification) updated by Jari Häkkinen
Priority changed
11:59 AM Ticket #925 (A candidate FAQ to Chapter 28. Reporters related FAQs) updated by Jari Häkkinen
Priority changed
11:58 AM Ticket #979 (Biomaterial LIMS) updated by Jari Häkkinen
Priority changed
11:58 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) updated by Jari Häkkinen
Priority changed
11:57 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by Jari Häkkinen
Priority changed
11:55 AM Ticket #639 (exportPureMatrix method) updated by Jari Häkkinen
Version, Milestone, Status, Owner changed
11:47 AM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) updated by Jari Häkkinen
Milestone changed
11:45 AM Ticket #979 (Biomaterial LIMS) updated by Jari Häkkinen
Owner, Milestone changed
11:43 AM Ticket #1027 (Annotation importer should be able to remove annotations) updated by Jari Häkkinen
Milestone changed
11:40 AM Ticket #1023 (Add support for using regular expressions when filtering lists) updated by Jari Häkkinen
Milestone changed
11:39 AM Ticket #1022 (Add support for using regular expressions in queries) updated by Jari Häkkinen
Milestone changed
11:37 AM Ticket #1016 (Filter table using a reporter list) updated by Jari Häkkinen
Milestone changed
11:36 AM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Jari Häkkinen
Milestone changed
11:36 AM Ticket #1014 (Issues listing data after removing items) updated by Jari Häkkinen
Milestone changed
11:35 AM Ticket #1012 (Information on 'read' access to users needs clarification) updated by Jari Häkkinen
Owner, Milestone changed
11:34 AM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Jari Häkkinen
Milestone changed
11:33 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Owner, Milestone changed
Johan check this issue.
11:31 AM Ticket #978 (Unzipped files never inherit file type specified during upload) closed by Jari Häkkinen
wontfix
11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by Jari Häkkinen
worksforme
11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) reopened by Jari Häkkinen
11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by Jari Häkkinen
wontfix: We'll close this ticket for now since we cannot reproduce the problem.
11:26 AM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Jari Häkkinen
Owner, Milestone changed
This ticket should be split to a registered ticket and last updated …
11:21 AM Ticket #925 (A candidate FAQ to Chapter 28. Reporters related FAQs) updated by Jari Häkkinen
Version, Milestone changed
11:19 AM Ticket #903 (Experiment Explorer is slow) updated by Jari Häkkinen
Milestone changed
11:16 AM Ticket #897 (Potential temporary directory clash for plugins running through job agents) closed by Jari Häkkinen
wontfix: This issue is something that the administrator and plugin programmer …
11:00 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) created by Jari Häkkinen
Read the attached file for details. Things to do: - Generate sample …
10:52 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by Jari Häkkinen
Status changed
10:52 AM Ticket #1028 (Plug-in for batch upload/modification of items) created by Jari Häkkinen
References to the latest versions of files (please keep this list up …
10:35 AM Ticket #621 (Write 'Plate' section) updated by Jari Häkkinen
Milestone changed

May 14, 2008:

10:41 AM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) updated by Nicklas Nordborg
Status, Milestone, Owner changed
10:40 AM Ticket #1020 (A reporter list should hold the number of reporters in it) closed by Nicklas Nordborg
fixed: (In [4299]) Fixes #1020: A reporter list should hold the number of …
10:40 AM Changeset [4299] by Nicklas Nordborg
Fixes #1020: A reporter list should hold the number of reporters in it
8:57 AM Ticket #1020 (A reporter list should hold the number of reporters in it) updated by Nicklas Nordborg
Status, Owner, Milestone changed

May 13, 2008:

2:40 PM Ticket #408 (Implement FTP server) updated by Nicklas Nordborg
It seems like the Apache FTP server has been bumped up a level. The …
11:44 AM ReleaseProcedure edited by Nicklas Nordborg
Fixed example links for revision logs (diff)
11:29 AM Milestone BASE 2.7 completed
Major features in this milestone: * Extension system for the web …
11:26 AM Changeset [4298] by Nicklas Nordborg
Merged pre-2.7-release to the trunk.
11:04 AM ReleaseProcedure edited by Nicklas Nordborg
New (temporary) procedure for generating documentation (diff)
10:49 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.7.0 (diff)
9:54 AM ReleaseProcedure edited by Nicklas Nordborg
Fixed item numbering (diff)
9:49 AM Changeset [4297] by Nicklas Nordborg
Changes for future release 2.7.1
9:44 AM Changeset [4296] by Nicklas Nordborg
Tagging version 2.7
9:44 AM Changeset [4295] by Nicklas Nordborg
Preparing relese 2.7

May 12, 2008:

8:20 PM Changeset [4294] by Nicklas Nordborg
References #932: Convert the MeV launcher to an extension Removed MeV …
8:20 PM Ticket #932 (Convert the MeV launcher to an extension) updated by Nicklas Nordborg
(In [4294]) References #932: Convert the MeV launcher to an extension …
2:03 PM ReleaseProcedure edited by Nicklas Nordborg
Added instruction to upload BASE2*.jar files (diff)
12:54 PM Ticket #932 (Convert the MeV launcher to an extension) updated by Nicklas Nordborg
(In [4293]) References #932: Convert the MeV launcher to an extension …
12:54 PM Changeset [4293] by Nicklas Nordborg
References #932: Convert the MeV launcher to an extension Updated …
11:46 AM Changeset [4292] by Nicklas Nordborg
Fixes #997: Read and update installation/upgrade instructions
11:46 AM Ticket #997 (Read and update installation/upgrade instructions) closed by Nicklas Nordborg
fixed: (In [4292]) Fixes #997: Read and update installation/upgrade instructions
10:53 AM Ticket #997 (Read and update installation/upgrade instructions) updated by Nicklas Nordborg
Status, Owner changed
9:49 AM Ticket #1027 (Annotation importer should be able to remove annotations) created by Nicklas Nordborg
If the new value for an annotation is empty(=null) there should be an …
9:31 AM Changeset [4291] by Nicklas Nordborg
Some minor changes to test procedures

May 9, 2008:

2:24 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) updated by Nicklas Nordborg
(In [4290]) References #1011: Select multiple alternatives for a …
2:24 PM Changeset [4290] by Nicklas Nordborg
References #1011: Select multiple alternatives for a filter with a …
12:49 PM Changeset [4289] by Nicklas Nordborg
References #933: Create extension points for some selected places in …
12:49 PM Ticket #933 (Create extension points for some selected places in the web client) updated by Nicklas Nordborg
(In [4289]) References #933: Create extension points for some selected …
12:18 PM Changeset [4288] by Nicklas Nordborg
Fixes #1026: Test programs that need the extended test data should …
12:18 PM Ticket #1026 (Test programs that need the extended test data should check that it ...) closed by Nicklas Nordborg
fixed: (In [4288]) Fixes #1026: Test programs that need the extended test …
11:17 AM Ticket #1026 (Test programs that need the extended test data should check that it ...) created by Nicklas Nordborg
The test data we are referring to is described here …
9:35 AM Changeset [4287] by Nicklas Nordborg
Deleting obsolete branches
8:47 AM Changeset [4286] by Nicklas Nordborg
Changes for future release 2.8
8:46 AM Changeset [4285] by Nicklas Nordborg
Forking new minor version 2.7 branch
8:44 AM Changeset [4284] by Nicklas Nordborg
Merged patch release 2.6.3 to the trunk. Delta: tags/2.6.3 - tags/2.6.2
8:33 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.6.3 (diff)
8:13 AM Milestone BASE 2.6.3 completed
Bug fixes for 2.6.2: Revision log: log:branches/2.6-stable@4230:4283
8:10 AM Changeset [4283] by Nicklas Nordborg
Tagging version 2.6.3
8:08 AM Changeset [4282] by Nicklas Nordborg
Preparing release 2.6.3

May 8, 2008:

10:33 PM Changeset [4281] by Jari Häkkinen
Removed potentially dangerous static declaration.
4:37 PM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) closed by Jari Häkkinen
fixed: (In [4280]) Fixes #1017. 1-channel median normalizarion added.
4:37 PM Changeset [4280] by Jari Häkkinen
Fixes #1017. 1-channel median normalizarion added.
3:09 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) updated by Johan Vallon-Christersson
Replying to nicklas: > I find the description in this …
1:46 PM Changeset [4279] by Nicklas Nordborg
Updating credits.txt before 2.7.0 release.
1:00 PM Ticket #773 (Filter reporter table using array design) closed by Nicklas Nordborg
wontfix: This should be possible when #1015 and #1016 becomes fixed. Eg. first …
12:57 PM Ticket #1007 (Add reference to the Illumina plugin in BASE doc Appendix B) closed by Nicklas Nordborg
wontfix: I think the existing link is enough.
12:52 PM Ticket #933 (Create extension points for some selected places in the web client) closed by Nicklas Nordborg
fixed: Nothing more to do.
12:51 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) closed by Nicklas Nordborg
fixed: (In [4278]) Fixes #1011: Select multiple alternatives for a filter …
12:51 PM Changeset [4278] by Nicklas Nordborg
Fixes #1011: Select multiple alternatives for a filter with a …
12:51 PM Changeset [4277] by Nicklas Nordborg
Fixes #1025: Add Hql.size() expression
12:51 PM Ticket #1025 (Add Hql.size() expression) closed by Nicklas Nordborg
fixed: (In [4277]) Fixes #1025: Add Hql.size() expression
12:50 PM Ticket #1025 (Add Hql.size() expression) created by Nicklas Nordborg
This is a HQL expression that creates a size(collection) expression. …
12:47 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) updated by Nicklas Nordborg
Summary changed
11:49 AM Changeset [4276] by Nicklas Nordborg
References #988: Add support for servlets in extensions Fixed …
11:49 AM Ticket #988 (Add support for servlets in extensions) updated by Nicklas Nordborg
(In [4276]) References #988: Add support for servlets in extensions …
10:48 AM Changeset [4275] by Nicklas Nordborg
References #1011: Allow to select multiple alternatives for a filter …
10:48 AM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) updated by Nicklas Nordborg
(In [4275]) References #1011: Allow to select multiple alternatives …
9:42 AM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) updated by Nicklas Nordborg
Status changed
9:39 AM Changeset [4274] by Martin Svensson
References #1021 Correct value is now returned by the pathCanBeUsed-method
9:39 AM Ticket #1021 (Unclosed DbControler) updated by Martin Svensson
(In [4274]) References #1021 Correct value is now returned by the …
9:29 AM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) created by Nicklas Nordborg
When job agents are used to execute jobs there is limited way to …
9:12 AM Ticket #1022 (Add support for using regular expressions in queries) updated by Nicklas Nordborg
Description changed
9:12 AM Ticket #1023 (Add support for using regular expressions when filtering lists) created by Nicklas Nordborg
This depends on #1022. We could use '~' and '!~' as the operator prefixes.
9:09 AM Ticket #1022 (Add support for using regular expressions in queries) created by Nicklas Nordborg
This is not in the SQL standard, but both Postgres and MySQL have an …
9:05 AM Changeset [4273] by Martin Svensson
Fixes #1021 Unclosed DbControl
9:05 AM Ticket #1021 (Unclosed DbControler) closed by Martin Svensson
fixed: (In [4273]) Fixes #1021 Unclosed DbControl
8:37 AM Ticket #1021 (Unclosed DbControler) updated by Martin Svensson
Status, Owner changed
8:36 AM Ticket #1021 (Unclosed DbControler) created by Martin Svensson
[…]
8:30 AM Changeset [4272] by Nicklas Nordborg
Fixes #1018: Make it possible to filter on null at the same time as a …
8:30 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by Nicklas Nordborg
fixed: (In [4272]) Fixes #1018: Make it possible to filter on null at the …
8:05 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) reopened by Nicklas Nordborg
Hmm... something strange has happened... The code that was checked in …
7:52 AM Ticket #1014 (Issues listing data after removing items) updated by Nicklas Nordborg
Summary changed
This can happen when a user has chosen to display/sort on/filter on a …

May 7, 2008:

11:16 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) updated by Nicklas Nordborg
Hmmm... there is a forth operation as well, but I don't think this …
11:07 PM Ticket #1020 (A reporter list should hold the number of reporters in it) created by Nicklas Nordborg
I think this would be useful information once #1019 is implemented and …
11:04 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) updated by Nicklas Nordborg
I find the description in this ticket a bit confusing... Doesn't the …
4:44 PM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) updated by Johan Vallon-Christersson
Summary changed
4:41 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) created by Johan Vallon-Christersson
Added functionality to manage reporter lists and create new reporter …
4:14 PM Ticket #1008 (Error in API doc for class `SpotExtraValueBatcher<I>`) closed by Martin Svensson
fixed: (In [4271]) Fixes #1008 Updated documentation
4:14 PM Changeset [4271] by Martin Svensson
Fixes #1008 Updated documentation
3:01 PM Changeset [4270] by Nicklas Nordborg
Fixes #1018: Make it possible to filter on null at the same time as a …
3:01 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by Nicklas Nordborg
fixed: (In [4270]) Fixes #1018: Make it possible to filter on null at the …
1:39 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) updated by Nicklas Nordborg
Status changed
1:38 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) created by Nicklas Nordborg
In the web client it is possible to filter on two values by giving a …
9:27 AM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) updated by Jari Häkkinen
Status changed
9:26 AM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) created by Jari Häkkinen
The summary says it all. Remember to change the information on core …

May 6, 2008:

7:30 PM Ticket #1016 (Filter table using a reporter list) created by Johan Vallon-Christersson
For a table that lists reporters/reporter info it would be useful to …
7:11 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) created by Johan Vallon-Christersson
Currently, the functionality to create reporter lists is only …
1:51 PM Ticket #954 (Array slides – Creating array slides using import plugin) closed by Nicklas Nordborg
wontfix: This will be probably be implemented as a more generic import plug-in …
10:07 AM Ticket #1013 (Sharing of items to other users and/or groups fails) updated by Nicklas Nordborg
A workaround is to assign the user to a role that has …
9:23 AM Changeset [4269] by Nicklas Nordborg
Fixes #1013: Sharing of items to other users and/or groups fails This …
9:23 AM Ticket #1013 (Sharing of items to other users and/or groups fails) closed by Nicklas Nordborg
fixed: (In [4269]) Fixes #1013: Sharing of items to other users and/or groups …
9:08 AM Ticket #1014 (Issues listing data after removing items) created by Jari Häkkinen
In some cases listing of spot data fails for me. After deleting …
8:56 AM Ticket #1013 (Sharing of items to other users and/or groups fails) updated by Nicklas Nordborg
Priority, Status, Owner, Milestone changed
8:47 AM Ticket #1013 (Sharing of items to other users and/or groups fails) created by Jari Häkkinen
A user with role 'User' cannot share items to other users nor groups. …
8:41 AM Ticket #1012 (Information on 'read' access to users needs clarification) created by Jari Häkkinen
In …
8:25 AM Changeset [4268] by Jari Häkkinen
Minor change in web client doc.

May 5, 2008:

10:05 PM Changeset [4267] by Nicklas Nordborg
References #974. Revert accidental renaming of method in [4256]
10:05 PM Ticket #974 (Link from raw bioassay to job that imported the raw data) updated by Nicklas Nordborg
(In [4267]) References #974. Revert accidental renaming of method in [4256]
3:02 PM Ticket #964 (Support preset filter list with null/not null values) closed by Nicklas Nordborg
duplicate: Replaced by #1011
3:02 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) closed by Nicklas Nordborg
duplicate: Replaced by #1011
3:01 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) created by Nicklas Nordborg
This ticket replaces #962 and #964. A property of an item that can …
1:24 PM Changeset [4266] by Nicklas Nordborg
Fixes #943: Base1PluginExecuter should import reporterlists
1:24 PM Ticket #943 (Base1PluginExecuter should import reporterlists) closed by Nicklas Nordborg
fixed: (In [4266]) Fixes #943: Base1PluginExecuter should import reporterlists
10:46 AM Ticket #943 (Base1PluginExecuter should import reporterlists) updated by Nicklas Nordborg
Status changed
10:46 AM Ticket #943 (Base1PluginExecuter should import reporterlists) updated by Nicklas Nordborg
Status, Owner changed
9:37 AM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) closed by Nicklas Nordborg
fixed: (In [4265]) Fixes #1001: Plug-ins that use the 'execute immediately' …
9:37 AM Changeset [4265] by Nicklas Nordborg
Fixes #1001: Plug-ins that use the 'execute immediately' option can't …
9:36 AM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) created by Nicklas Nordborg
In the current implementation a window with the message `Do not close …
8:44 AM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) updated by Nicklas Nordborg
Owner, Status changed
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