Timeline
May 21, 2008:
- 10:49 PM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) closed by
- fixed: (In [4308]) Fixes #1030. User selects scaling/subtraction depending on …
- 10:49 PM Changeset [4308] by
- Fixes #1030. User selects scaling/subtraction depending on whether …
- 5:29 PM Changeset [4307] by
- References #532. Written main part of the Job section
- 3:39 PM Changeset [4306] by
- References #1015: Add reporter list from tables that list …
- 1:22 PM Ticket #1031 (Filtering with selection lists) closed by
- invalid: It is intentional and needed if using only a keybord and follows the …
- 1:13 PM Ticket #1031 (Filtering with selection lists) created by
- The selection list filters in list views works if the green check box …
- 1:11 PM Changeset [4305] by
- References #1015: Add reporter list from tables that list …
- 8:47 AM Ticket #1027 (Annotation importer should be able to remove annotations) closed by
- fixed: (In [4304]) Fixes #1027: Annotation importer should be able to remove …
- 8:47 AM Changeset [4304] by
- Fixes #1027: Annotation importer should be able to remove annotations
May 20, 2008:
- 10:54 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) created by
- The current implementation translate the data to zero median for each …
May 19, 2008:
- 2:48 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) closed by
- fixed: (In [4303]) Fixes #987 NullPointerException? in "Test with file" …
- 2:48 PM Changeset [4303] by
- Fixes #987 NullPointerException? in "Test with file" function if no …
- 2:07 PM Changeset [4302] by
- References #1016: Filter table using a reporter list I think this …
May 16, 2008:
- 11:40 AM Changeset [4301] by
- References #1019: Reporter list manager - Create reporter list using …
- 11:17 AM Changeset [4300] by
- Removed debug-code
May 15, 2008:
- 11:31 AM Ticket #978 (Unzipped files never inherit file type specified during upload) closed by
- wontfix
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by
- worksforme
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) reopened by
- 11:30 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) closed by
- wontfix: We'll close this ticket for now since we cannot reproduce the problem.
- 11:16 AM Ticket #897 (Potential temporary directory clash for plugins running through job agents) closed by
- wontfix: This issue is something that the administrator and plugin programmer …
- 11:00 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) created by
- Read the attached file for details. Things to do: - Generate sample …
- 10:52 AM Ticket #1028 (Plug-in for batch upload/modification of items) created by
- References to the latest versions of files (please keep this list up …
May 14, 2008:
- 10:40 AM Ticket #1020 (A reporter list should hold the number of reporters in it) closed by
- fixed: (In [4299]) Fixes #1020: A reporter list should hold the number of …
- 10:40 AM Changeset [4299] by
- Fixes #1020: A reporter list should hold the number of reporters in it
May 13, 2008:
- 11:44 AM ReleaseProcedure edited by
- Fixed example links for revision logs (diff)
- 11:29 AM Milestone BASE 2.7 completed
- Major features in this milestone: * Extension system for the web …
- 11:26 AM Changeset [4298] by
- Merged pre-2.7-release to the trunk.
- 11:04 AM ReleaseProcedure edited by
- New (temporary) procedure for generating documentation (diff)
- 10:49 AM DownloadPage edited by
- Releasing 2.7.0 (diff)
- 9:54 AM ReleaseProcedure edited by
- Fixed item numbering (diff)
- 9:49 AM Changeset [4297] by
- Changes for future release 2.7.1
- 9:44 AM Changeset [4296] by
- Tagging version 2.7
- 9:44 AM Changeset [4295] by
- Preparing relese 2.7
May 12, 2008:
- 8:20 PM Changeset [4294] by
- References #932: Convert the MeV launcher to an extension Removed MeV …
- 2:03 PM ReleaseProcedure edited by
- Added instruction to upload BASE2*.jar files (diff)
- 12:54 PM Changeset [4293] by
- References #932: Convert the MeV launcher to an extension Updated …
- 11:46 AM Changeset [4292] by
- Fixes #997: Read and update installation/upgrade instructions
- 11:46 AM Ticket #997 (Read and update installation/upgrade instructions) closed by
- fixed: (In [4292]) Fixes #997: Read and update installation/upgrade instructions
- 9:49 AM Ticket #1027 (Annotation importer should be able to remove annotations) created by
- If the new value for an annotation is empty(=null) there should be an …
- 9:31 AM Changeset [4291] by
- Some minor changes to test procedures
May 9, 2008:
- 2:24 PM Changeset [4290] by
- References #1011: Select multiple alternatives for a filter with a …
- 12:49 PM Changeset [4289] by
- References #933: Create extension points for some selected places in …
- 12:18 PM Changeset [4288] by
- Fixes #1026: Test programs that need the extended test data should …
- 12:18 PM Ticket #1026 (Test programs that need the extended test data should check that it ...) closed by
- fixed: (In [4288]) Fixes #1026: Test programs that need the extended test …
- 11:17 AM Ticket #1026 (Test programs that need the extended test data should check that it ...) created by
- The test data we are referring to is described here …
- 9:35 AM Changeset [4287] by
- Deleting obsolete branches
- 8:47 AM Changeset [4286] by
- Changes for future release 2.8
- 8:46 AM Changeset [4285] by
- Forking new minor version 2.7 branch
- 8:44 AM Changeset [4284] by
- Merged patch release 2.6.3 to the trunk. Delta: tags/2.6.3 - tags/2.6.2
- 8:33 AM DownloadPage edited by
- Releasing 2.6.3 (diff)
- 8:13 AM Milestone BASE 2.6.3 completed
- Bug fixes for 2.6.2: Revision log: log:branches/2.6-stable@4230:4283
- 8:10 AM Changeset [4283] by
- Tagging version 2.6.3
- 8:08 AM Changeset [4282] by
- Preparing release 2.6.3
May 8, 2008:
- 10:33 PM Changeset [4281] by
- Removed potentially dangerous static declaration.
- 4:37 PM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) closed by
- fixed: (In [4280]) Fixes #1017. 1-channel median normalizarion added.
- 4:37 PM Changeset [4280] by
- Fixes #1017. 1-channel median normalizarion added.
- 1:46 PM Changeset [4279] by
- Updating credits.txt before 2.7.0 release.
- 1:00 PM Ticket #773 (Filter reporter table using array design) closed by
- wontfix: This should be possible when #1015 and #1016 becomes fixed. Eg. first …
- 12:57 PM Ticket #1007 (Add reference to the Illumina plugin in BASE doc Appendix B) closed by
- wontfix: I think the existing link is enough.
- 12:52 PM Ticket #933 (Create extension points for some selected places in the web client) closed by
- fixed: Nothing more to do.
- 12:51 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) closed by
- fixed: (In [4278]) Fixes #1011: Select multiple alternatives for a filter …
- 12:51 PM Changeset [4278] by
- Fixes #1011: Select multiple alternatives for a filter with a …
- 12:51 PM Changeset [4277] by
- Fixes #1025: Add Hql.size() expression
- 12:51 PM Ticket #1025 (Add Hql.size() expression) closed by
- fixed: (In [4277]) Fixes #1025: Add Hql.size() expression
- 12:50 PM Ticket #1025 (Add Hql.size() expression) created by
-
This is a HQL expression that creates a
size(collection)expression. … - 11:49 AM Changeset [4276] by
- References #988: Add support for servlets in extensions Fixed …
- 10:48 AM Changeset [4275] by
- References #1011: Allow to select multiple alternatives for a filter …
- 9:39 AM Changeset [4274] by
- References #1021 Correct value is now returned by the pathCanBeUsed-method
- 9:29 AM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) created by
- When job agents are used to execute jobs there is limited way to …
- 9:12 AM Ticket #1023 (Add support for using regular expressions when filtering lists) created by
- This depends on #1022. We could use '~' and '!~' as the operator prefixes.
- 9:09 AM Ticket #1022 (Add support for using regular expressions in queries) created by
- This is not in the SQL standard, but both Postgres and MySQL have an …
- 9:05 AM Changeset [4273] by
- Fixes #1021 Unclosed DbControl?
- 9:05 AM Ticket #1021 (Unclosed DbControler) closed by
- fixed: (In [4273]) Fixes #1021 Unclosed DbControl?
- 8:36 AM Ticket #1021 (Unclosed DbControler) created by
- […]
- 8:30 AM Changeset [4272] by
- Fixes #1018: Make it possible to filter on null at the same time as a …
- 8:30 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by
- fixed: (In [4272]) Fixes #1018: Make it possible to filter on null at the …
- 8:05 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) reopened by
- Hmm... something strange has happened... The code that was checked in …
May 7, 2008:
- 11:07 PM Ticket #1020 (A reporter list should hold the number of reporters in it) created by
- I think this would be useful information once #1019 is implemented and …
- 4:41 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) created by
- Added functionality to manage reporter lists and create new reporter …
- 4:14 PM Ticket #1008 (Error in API doc for class `SpotExtraValueBatcher<I>`) closed by
- fixed: (In [4271]) Fixes #1008 Updated documentation
- 4:14 PM Changeset [4271] by
- Fixes #1008 Updated documentation
- 3:01 PM Changeset [4270] by
- Fixes #1018: Make it possible to filter on null at the same time as a …
- 3:01 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by
- fixed: (In [4270]) Fixes #1018: Make it possible to filter on null at the …
- 1:38 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) created by
- In the web client it is possible to filter on two values by giving a …
- 9:26 AM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) created by
- The summary says it all. Remember to change the information on core …
May 6, 2008:
- 7:30 PM Ticket #1016 (Filter table using a reporter list) created by
- For a table that lists reporters/reporter info it would be useful to …
- 7:11 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) created by
- Currently, the functionality to create reporter lists is only …
- 1:51 PM Ticket #954 (Array slides – Creating array slides using import plugin) closed by
- wontfix: This will be probably be implemented as a more generic import plug-in …
- 9:23 AM Changeset [4269] by
- Fixes #1013: Sharing of items to other users and/or groups fails This …
- 9:23 AM Ticket #1013 (Sharing of items to other users and/or groups fails) closed by
- fixed: (In [4269]) Fixes #1013: Sharing of items to other users and/or groups …
- 9:08 AM Ticket #1014 (Issues listing data after removing items) created by
- In some cases listing of spot data fails for me. After deleting …
- 8:47 AM Ticket #1013 (Sharing of items to other users and/or groups fails) created by
- A user with role 'User' cannot share items to other users nor groups. …
- 8:41 AM Ticket #1012 (Information on 'read' access to users needs clarification) created by
- In …
- 8:25 AM Changeset [4268] by
- Minor change in web client doc.
May 5, 2008:
- 10:05 PM Changeset [4267] by
- References #974. Revert accidental renaming of method in [4256]
- 3:02 PM Ticket #964 (Support preset filter list with null/not null values) closed by
- duplicate: Replaced by #1011
- 3:02 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) closed by
- duplicate: Replaced by #1011
- 3:01 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) created by
- This ticket replaces #962 and #964. A property of an item that can …
- 1:24 PM Changeset [4266] by
- Fixes #943: Base1PluginExecuter should import reporterlists
- 1:24 PM Ticket #943 (Base1PluginExecuter should import reporterlists) closed by
- fixed: (In [4266]) Fixes #943: Base1PluginExecuter should import reporterlists
- 9:37 AM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) closed by
- fixed: (In [4265]) Fixes #1001: Plug-ins that use the 'execute immediately' …
- 9:37 AM Changeset [4265] by
- Fixes #1001: Plug-ins that use the 'execute immediately' option can't …
- 9:36 AM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) created by
- In the current implementation a window with the message `Do not close …
Apr 30, 2008:
- 12:40 PM Changeset [4264] by
- References #436: Create extension system for the web application …
- 12:39 PM Changeset [4263] by
- References #933: Create extension points for some selected places in …
- 9:54 AM Changeset [4262] by
- References #933: Create extension points for some selected places in …
Apr 29, 2008:
- 1:58 PM Ticket #1009 (Link from array design to job that imported the features) closed by
- fixed: (In [4261]) Fixes #1009: Link from array design to job that imported …
- 1:58 PM Changeset [4261] by
- Fixes #1009: Link from array design to job that imported the features
- 1:58 PM Changeset [4260] by
- References #974. Don't display import information for file-only data sets
- 1:47 PM Changeset [4259] by
- References #974. Changed label on 'import date' column
- 1:42 PM Changeset [4258] by
- Fixes #974: Link from raw bioassay to job that imported the raw data
- 1:42 PM Ticket #974 (Link from raw bioassay to job that imported the raw data) closed by
- fixed: (In [4258]) Fixes #974: Link from raw bioassay to job that imported …
- 12:59 PM Changeset [4257] by
- References #1009: Link from array design to job that imported the …
- 11:39 AM Changeset [4256] by
- References #974: Link from raw bioassay to job that imported the raw …
- 8:26 AM Ticket #1009 (Link from array design to job that imported the features) created by
- This is the same thing for array designs as #974 is for raw bioassays
Apr 28, 2008:
- 11:16 PM Ticket #1008 (Error in API doc for class `SpotExtraValueBatcher<I>`) created by
-
In javadoc section for
Class SpotExtraValueBatcher<I>there should … - 8:29 PM Ticket #1007 (Add reference to the Illumina plugin in BASE doc Appendix B) created by
- The listing of core plugins should reference to baseplugins.thep.lu.se …
- 3:44 PM Changeset [4255] by
- Typo.
- 3:00 PM Changeset [4254] by
- Fixes #972: Assign job to experiment when the job is created The …
- 3:00 PM Ticket #972 (Assign job to experiment when the job is created) closed by
- fixed: (In [4254]) Fixes #972: Assign job to experiment when the job is …
- 12:25 PM Changeset [4253] by
- Undo changes made in [4250] to this file. The code was related to …
- 12:19 PM Ticket #1006 (Make it possible to search for missing annotations) closed by
- fixed: (In [4252]) Fixes #1006: Make it possible to search for missing annotations
- 12:19 PM Changeset [4252] by
- Fixes #1006: Make it possible to search for missing annotations
- 10:54 AM Ticket #1006 (Make it possible to search for missing annotations) created by
- There is an issue that manifests itself when filtering lists of items …
- 10:48 AM Changeset [4251] by
- Fixes #965: Filtering the list – selection list vs. input box for …
- 10:48 AM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) closed by
- fixed: (In [4251]) Fixes #965: Filtering the list ?\226?\128?\147 selection …
Apr 25, 2008:
- 3:41 PM Changeset [4250] by
- References #965: Filtering the list – selection list vs. input box for …
Apr 24, 2008:
- 1:30 PM Changeset [4249] by
- Fixes #1005: Test programs should print out server information just …
- 1:30 PM Ticket #1005 (Test programs should print out server information just like the initdb ...) closed by
- fixed: (In [4249]) Fixes #1005: Test programs should print out server …
- 1:08 PM Changeset [4248] by
- Fixes #1004: Upgrade Postgres JDBC driver to 8.3.603
- 1:08 PM Ticket #1004 (Upgrade Postgres JDBC driver to 8.3.603) closed by
- fixed: (In [4248]) Fixes #1004: Upgrade Postgres JDBC driver to 8.3.603
- 1:07 PM Ticket #1005 (Test programs should print out server information just like the initdb ...) created by
- This is very useful to know and make sure that the test programs run …
- 12:55 PM Changeset [4247] by
- Fixes #1003: Illumina raw data importer – Enhance feature mismatch …
- 12:55 PM Ticket #1003 (Illumina raw data importer – Enhance feature mismatch error handling) closed by
- fixed: (In [4247]) Fixes #1003: Illumina raw data importer ?\226?\128?\147 …
- 12:11 PM Ticket #1004 (Upgrade Postgres JDBC driver to 8.3.603) created by
- We currently have 8.2.506. The documentation on their web page …
- 11:39 AM Changeset [4246] by
- Fixes #968: Raw data importer – Enhance feature mismatch error handling
- 11:39 AM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) closed by
- fixed: (In [4246]) Fixes #968: Raw data importer ?\226?\128?\147 Enhance …
- 10:48 AM Ticket #1003 (Illumina raw data importer – Enhance feature mismatch error handling) created by
- Do the same things with this importer as for the flat file raw data …
- 8:00 AM Changeset [4245] by
- Fixes #1002: Possible PermissionDeniedException? when listing …
- 8:00 AM Ticket #1002 (Possible PermissionDeniedException when listing rawbioassay through ...) closed by
- fixed: (In [4245]) Fixes #1002: Possible PermissionDeniedException? when …
- 7:44 AM Ticket #1002 (Possible PermissionDeniedException when listing rawbioassay through ...) created by
- This happens if one of the raw bioassays the user has access to is …
Apr 23, 2008:
- 3:04 PM Changeset [4244] by
- Fixes #993: Paste multiple barcodes in the Multiple slides wizard
- 3:04 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) closed by
- fixed: (In [4244]) Fixes #993: Paste multiple barcodes in the Multiple slides …
- 1:51 PM Changeset [4243] by
- Fixes #920: Add support for aborting queries using a StatlessSession?
- 1:51 PM Ticket #920 (Add support for aborting queries using a StatlessSession) closed by
- fixed: (In [4243]) Fixes #920: Add support for aborting queries using a …
- 1:50 PM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) created by
- This is true for all plug-ins even those that implements the …
- 1:44 PM Changeset [4242] by
- Fixes #1000: SimpleExport? count items twice
- 1:44 PM Ticket #1000 (SimpleExport count items twice) closed by
- fixed: (In [4242]) Fixes #1000: SimpleExport? count items twice
- 1:40 PM Ticket #1000 (SimpleExport count items twice) created by
-
The
SimpleExportis the plug-in that is used for all table-like …
Apr 22, 2008:
- 2:07 PM Changeset [4241] by
- Fixes #994: Create GAL export plug-in for array designs
- 2:07 PM Ticket #994 (Create GAL export plug-in for array designs) closed by
- fixed: (In [4241]) Fixes #994: Create GAL export plug-in for array designs
- 2:06 PM Changeset [4240] by
- Fixes #999: PrintMapImporter? should import feature diameter from TAM …
- 2:06 PM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) closed by
- fixed: (In [4240]) Fixes #999: PrintMapImporter? should import feature …
- 11:48 AM Changeset [4239] by
- References #994: Create GAL export plug-in for array designs Added …
- 11:36 AM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) created by
- We need a new column in the ArrayDesignBlock table for this. The …
Apr 21, 2008:
- 10:50 AM Ticket #989 (Add support for using extension classes in custom JSP pages) closed by
- fixed
- 10:50 AM Ticket #988 (Add support for servlets in extensions) closed by
- fixed
- 10:49 AM Ticket #436 (Create extension system for the web application) closed by
- fixed
- 10:00 AM Changeset [4238] by
- Fixes #998: Decimal numbers may be incorrectly rounded
- 10:00 AM Ticket #998 (Decimal numbers may be incorrectly rounded) closed by
- fixed: (In [4238]) Fixes #998: Decimal numbers may be incorrectly rounded
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