Timeline



Apr 11, 2008:

5:36 PM Ticket #991 (Created date - auto changed from blank when edit sample) created by Johan Vallon-Christersson
When editing a sample that does not have Creation date defined …
5:32 PM Ticket #990 (Change default create date for samples (and other items).) created by Johan Vallon-Christersson
When adding Samples the Created date is by default set to current …
1:57 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) closed by Nicklas Nordborg
fixed
1:54 PM Changeset [4219] by Nicklas Nordborg
References #986: Move example code for web services to the BASE …
11:49 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) closed by Nicklas Nordborg
fixed
11:46 AM DeveloperInformation edited by Nicklas Nordborg
Changed documentation links (diff)
11:41 AM DeveloperInformation edited by Nicklas Nordborg
Link to new site for examples (diff)
10:58 AM Changeset [4218] by Nicklas Nordborg
References #898: Move example code for plug-ins to the BASE plug-ins …

Apr 10, 2008:

9:47 PM Ticket #989 (Add support for using extension classes in custom JSP pages) created by Nicklas Nordborg
An extensions that uses custom JSP pages are currently limited to use …
9:31 PM Ticket #988 (Add support for servlets in extensions) created by Nicklas Nordborg
This is "needed" by the MeV launcher. It currently uses the MevExport?
6:07 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) created by Johan Vallon-Christersson
When using Annotation importer. Input file is small and contains two …
2:34 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) created by Nicklas Nordborg
Was part of #898. Better to have this as it's own ticket.
2:28 PM Changeset [4217] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:23 PM Changeset [4216] by Nicklas Nordborg
Fixes #985: File sizes are not correctly rounded Also fixed so that …
2:23 PM Ticket #985 (File sizes are not correctly rounded) closed by Nicklas Nordborg
fixed: (In [4216]) Fixes #985: File sizes are not correctly rounded Also …
1:58 PM Ticket #985 (File sizes are not correctly rounded) created by Nicklas Nordborg
I uploaded a file which size is 4050 (~3.995Kb) bytes in size. This is …
1:52 PM Changeset [4215] by Nicklas Nordborg
Fixes #984: Bioassays may show up duplicated in list of bioassays The …
1:52 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) closed by Nicklas Nordborg
fixed: (In [4215]) Fixes #984: Bioassays may show up duplicated in list of …
1:45 PM Ticket #983 (update.sh script doesn't validate parameters) closed by Nicklas Nordborg
fixed: (In [4214]) Fixes #983: update.sh script doesn't validate parameters
1:45 PM Changeset [4214] by Nicklas Nordborg
Fixes #983: update.sh script doesn't validate parameters
1:42 PM Changeset [4213] by Nicklas Nordborg
Fixes #980: Items created by jobs are not shared to the active project.
1:42 PM Ticket #980 (Items created by jobs are not shared to the active project.) closed by Nicklas Nordborg
fixed: (In [4213]) Fixes #980: Items created by jobs are not shared to the …
12:53 PM Changeset [4212] by Nicklas Nordborg
References #957: Base1PluginExecuter doesn't import plug-in generated …
12:18 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) created by Nicklas Nordborg
I am not really sure why this is happening. Sometimes a bioassay …
12:09 PM Ticket #983 (update.sh script doesn't validate parameters) created by Jari Häkkinen
I am following the Illumina plug-in installation recipe and read that …

Apr 9, 2008:

4:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) created by Johan Vallon-Christersson
After running a plugin (that creates directories and files and …
3:16 PM Ticket #981 (Share all subdirectories and files when sharing a directory) created by Johan Vallon-Christersson
When sharing a directory, its subdirectories and files are not shared. …
3:15 PM Ticket #980 (Items created by jobs are not shared to the active project.) created by Johan Vallon-Christersson
The user case: When working in an active project I run a plugin in an …
2:44 PM Ticket #979 (Biomaterial LIMS) created by Johan Vallon-Christersson
Enhancing biomaterial management in BASE by adding Biomaterial LIMS …

Apr 8, 2008:

2:16 PM Ticket #978 (Unzipped files never inherit file type specified during upload) created by base
There should perhaps be an option to unpack an uploaded zip file …

Apr 7, 2008:

2:02 PM Changeset [4211] by Nicklas Nordborg
Fixes #970: PluginConfigurationImporter? doesn't support multi-valued …
2:02 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) closed by Nicklas Nordborg
fixed: (In [4211]) Fixes #970: PluginConfigurationImporter? doesn't support …
1:48 PM Changeset [4210] by Nicklas Nordborg
Fixes #977: ClassCastException? in Experiment overview when clicking on …
1:48 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) closed by Nicklas Nordborg
fixed: (In [4210]) Fixes #977: ClassCastException? in Experiment overview when …
1:24 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) created by Nicklas Nordborg
1. Select an experiment which has at least one experimental factor. …
1:19 PM Changeset [4209] by Nicklas Nordborg
Fixes #976: NullPointerException? in Experiment overview
1:19 PM Ticket #976 (NullPointerException in Experiment overview) closed by Nicklas Nordborg
fixed: (In [4209]) Fixes #976: NullPointerException? in Experiment overview
1:01 PM Changeset [4208] by Nicklas Nordborg
References #436: Create extension system for the web application …
12:19 PM Ticket #976 (NullPointerException in Experiment overview) created by Nicklas Nordborg
The original report is found in #975. I have now been able to …

Apr 4, 2008:

6:36 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) created by Johan Vallon-Christersson
Working in an experiment containing 3 raw bioassays, all from the same …
2:44 PM Changeset [4207] by Nicklas Nordborg
References #436: Create extension system for the web application …
8:42 AM Changeset [4206] by Nicklas Nordborg
References #436: Create extension system for the web application …

Apr 3, 2008:

11:34 AM Ticket #974 (Link from raw bioassay to job that imported the raw data) created by Johan Vallon-Christersson
This ticket relates to ticket:750 A user scenario involves going back …

Apr 2, 2008:

8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) closed by Nicklas Nordborg
fixed: (In [4205]) Fixes #973: Add a 'svn.update' target to the build file
8:41 PM Changeset [4205] by Nicklas Nordborg
Fixes #973: Add a 'svn.update' target to the build file
7:54 PM Ticket #973 (Add a 'svn.update' target to the build file) created by Nicklas Nordborg
This would simplify automatic generation of the documentation. After …
5:06 PM Ticket #972 (Assign job to experiment when the job is created) created by Johan Vallon-Christersson
This ticket concerns jobs running in experiments. Typically, a user …
1:46 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) closed by Nicklas Nordborg
invalid: This is problem with Tomcat.
1:20 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) created by base
I just upgraded our dev server (system info below) […] and found …
12:43 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) created by Nicklas Nordborg
From the mailing list: …
10:44 AM Changeset [4204] by Nicklas Nordborg
Fixes #969: Annotation importer doesn't save "Owned by ..." parameter …
10:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) closed by Nicklas Nordborg
fixed: (In [4204]) Fixes #969: Annotation importer doesn't save "Owned by …
9:43 AM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) closed by Nicklas Nordborg
fixed: (In [4203]) Fixes #963: New hybridization... button on labelled …
9:43 AM Changeset [4203] by Nicklas Nordborg
Fixes #963: New hybridization... button on labelled extract page …

Apr 1, 2008:

7:24 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) created by Nicklas Nordborg
It seems like the annotation importer doesn't save which option has …
3:30 PM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) created by Johan Vallon-Christersson
Feature mismatch error handling when importing raw data concerns how …
3:18 PM Ticket #967 (Assign the parent directory permissions to new files/directories) created by base
I made a /home/shared folder and gave it Everyone RU permissions. The …
2:55 PM Changeset [4202] by Nicklas Nordborg
References #436: Create extension system for the web application All …
2:43 PM Ticket #966 (Registered and possibly last updated – add to all/most items) created by Johan Vallon-Christersson
Some items, such as Samples, have a Registered property, i.e., the …
2:25 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) created by Johan Vallon-Christersson
This ticket is somewhat related to ticket:962 but more specifically …

Mar 31, 2008:

8:41 PM Ticket #964 (Support preset filter list with null/not null values) created by Nicklas Nordborg
Currently, when a preset filter uses a list of predefined values you …
2:58 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) created by base
When clicking on the "New hybridization..." action button on a labeled …
12:44 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) created by Johan Vallon-Christersson
When filtering an item list some columns that can only take a few …
12:13 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) created by Johan Vallon-Christersson
If an item list contains many items you may need to use a filter to be …
10:48 AM Changeset [4201] by Nicklas Nordborg
Fixes #958: Document that the migration program is no longer actively …
10:48 AM Ticket #958 (Document that the migration program is no longer actively tested or ...) closed by Nicklas Nordborg
fixed: (In [4201]) Fixes #958: Document that the migration program is no …
10:00 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) closed by Nicklas Nordborg
fixed: (In [4200]) Fixes #960: Removing a user from a group doesn't work if …
10:00 AM Changeset [4200] by Nicklas Nordborg
Fixes #960: Removing a user from a group doesn't work if the user is a …
9:59 AM Ticket #959 (Users may be duplicated in group member list for quota groups) closed by Nicklas Nordborg
fixed: (In [4199]) Fixes #959: Users may be duplicated in group member list …
9:59 AM Changeset [4199] by Nicklas Nordborg
Fixes #959: Users may be duplicated in group member list for quota groups
9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) created by Nicklas Nordborg
How to reproduce: 1. Create a group G and assign it some quota 2. …

Mar 28, 2008:

2:52 PM Ticket #959 (Users may be duplicated in group member list for quota groups) created by Nicklas Nordborg
How to reproduce: 1. Create two groups, A and B. Assign quota to one …
2:42 PM Ticket #958 (Document that the migration program is no longer actively tested or ...) created by Nicklas Nordborg
There is a section about the migration in the docbook documentation.
2:41 PM Changeset [4198] by Nicklas Nordborg
References #436: Create extension system for the web application …

Mar 27, 2008:

8:56 AM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) created by Nicklas Nordborg
The first case was a filtering plug-in which caused the raw data links …
8:36 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) closed by Nicklas Nordborg
fixed: (In [4197]) Fixes #956: Spot image generation throws …
8:36 AM Changeset [4197] by Nicklas Nordborg
Fixes #956: Spot image generation throws NullPointerException? if a …
8:02 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) created by Nicklas Nordborg
Here is the stacktrace (from BASE 2.4.5): […] See also: …

Mar 26, 2008:

7:12 PM Ticket #955 (Array slides – make test for barcode uniqueness) created by Nicklas Nordborg
As mentioned in the BASE core specifications enforcing array slide …
6:16 PM Ticket #954 (Array slides – Creating array slides using import plugin) created by Johan Vallon-Christersson
In BASE2, array slides can be created one-by-one or by using the …

Mar 25, 2008:

10:01 AM Changeset [4196] by Nicklas Nordborg
Fixes #952: Update MySQL JDBC driver to a newer version
10:01 AM Ticket #952 (Update MySQL JDBC driver to a newer version) closed by Nicklas Nordborg
fixed: (In [4196]) Fixes #952: Update MySQL JDBC driver to a newer version
9:08 AM Changeset [4195] by Nicklas Nordborg
Merged patch release 2.6.1 to the trunk.
9:07 AM ReleaseProcedure edited by Nicklas Nordborg
Corrected merge instructions (diff)
9:02 AM ReleaseProcedure edited by Nicklas Nordborg
Updating release procedure (diff)
8:50 AM Milestone BASE 2.6.1 completed
Bug fixes for 2.6. Revision log: log:branches/2.6-stable@4156:4191
8:43 AM DownloadPage edited by Nicklas Nordborg
Added 2.6.1 for download (diff)
8:31 AM Changeset [4194] by Nicklas Nordborg
Changes for future release 2.6.2
8:28 AM Changeset [4193] by Nicklas Nordborg
Tagging version 2.6.1
8:10 AM Changeset [4192] by Nicklas Nordborg
Preparing release 2.6.1

Mar 20, 2008:

1:29 PM Changeset [4191] by Nicklas Nordborg
Fixes #953: Add 'useServerPrepStmts=true' to db.url setting in …
1:29 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) closed by Nicklas Nordborg
fixed: (In [4191]) Fixes #953: Add 'useServerPrepStmts=true' to db.url …
1:02 PM Changeset [4190] by Nicklas Nordborg
Fixed compilation error.
12:51 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) created by Nicklas Nordborg
It may be that the lack of this configuration option disables the use …
12:48 PM Ticket #952 (Update MySQL JDBC driver to a newer version) created by Nicklas Nordborg
We are currently using 5.0.6. 5.0.8 is available and also 5.1.5. We …
12:17 PM Changeset [4189] by Nicklas Nordborg
Deleting obsolete branch
12:16 PM Changeset [4188] by Nicklas Nordborg
Deleting obsolete branch
12:15 PM Changeset [4187] by Nicklas Nordborg
Merged extensions branch into trunk
12:00 PM Changeset [4186] by Nicklas Nordborg
Merged log:trunk#4177:4179 into extensions branch
11:57 AM Changeset [4185] by Nicklas Nordborg
References #436: Create extension system for the web application More …
11:54 AM Changeset [4184] by Nicklas Nordborg
References #436: Create extension system for the web application …

Mar 19, 2008:

1:16 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) closed by Nicklas Nordborg
fixed: (In [4183]) Fixes #951: JarClassLoader?.getInstance always creates a …
1:16 PM Changeset [4183] by Nicklas Nordborg
Fixes #951: JarClassLoader?.getInstance always creates a new class …
12:46 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) created by Nicklas Nordborg
The code that checks for a changed JAR file is incorrect and includes …

Mar 18, 2008:

7:51 PM Ticket #950 (Exception when setting active project to none) closed by Nicklas Nordborg
duplicate: See #947
5:24 PM Ticket #950 (Exception when setting active project to none) created by base
If a user logs in, sets the active project to any project then sets it …
2:00 PM Changeset [4182] by Nicklas Nordborg
Added new image
1:59 PM Changeset [4181] by Nicklas Nordborg
References #436: Create extension system for the web application Most …

Mar 17, 2008:

2:40 PM Changeset [4180] by Nicklas Nordborg
References #436: Create extension system for the web application …
9:28 AM Changeset [4179] by Jari Häkkinen
Corrected typo.

Mar 14, 2008:

12:50 PM RobotsTxt edited by Nicklas Nordborg
Disallow /changeset for robots (diff)
12:40 PM RobotsTxt edited by Nicklas Nordborg
Disallow robots (diff)
11:24 AM ReleaseProcedure edited by Nicklas Nordborg
Changed release manager and merge master (diff)
11:17 AM Changeset [4178] by Nicklas Nordborg
Merged log:trunk#4160:4177 into extensions branch
11:13 AM Changeset [4177] by Nicklas Nordborg
Fixes #948: Change web application to servlet api 2.5 instead of 2.4 …
11:10 AM Changeset [4176] by Nicklas Nordborg
Fixes #948: Change web application to servlet api 2.5 instead of 2.4
11:10 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) closed by Nicklas Nordborg
fixed: (In [4176]) Fixes #948: Change web application to servlet api 2.5 …
9:47 AM Changeset [4175] by Nicklas Nordborg
Fixes #949: Installation documentation has incorrect information about …
9:47 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) closed by Nicklas Nordborg
fixed: (In [4175]) Fixes #949: Installation documentation has incorrect …
9:33 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) created by Nicklas Nordborg
Quotes from the documentation: "Download and install Java SDK 1.5..." …
9:18 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) created by Nicklas Nordborg
I need to get the "context path" (=the root path of the web …

Mar 13, 2008:

8:36 AM Changeset [4174] by Nicklas Nordborg
Fixes #947: "not-null property references a null or transient value" …
8:36 AM Ticket #947 ("not-null property references a null or transient value" error on logout) closed by Nicklas Nordborg
fixed: (In [4174]) Fixes #947: "not-null property references a null or …
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