Timeline
Apr 7, 2008:
- 2:09 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by
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Status changed
- 2:02 PM Changeset [4211] by
- Fixes #970: PluginConfigurationImporter doesn't support multi-valued …
- 2:02 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) closed by
- fixed: (In [4211]) Fixes #970: PluginConfigurationImporter doesn't support …
- 1:48 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) updated by
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Status, Owner changed
- 1:48 PM Changeset [4210] by
- Fixes #977: ClassCastException in Experiment overview when clicking on …
- 1:48 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) closed by
- fixed: (In [4210]) Fixes #977: ClassCastException in Experiment overview when …
- 1:25 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) updated by
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Status, Owner changed
- 1:24 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) created by
- 1. Select an experiment which has at least one experimental factor. …
- 1:19 PM Changeset [4209] by
- Fixes #976: NullPointerException in Experiment overview
- 1:19 PM Ticket #976 (NullPointerException in Experiment overview) closed by
- fixed: (In [4209]) Fixes #976: NullPointerException in Experiment overview
- 1:03 PM Ticket #976 (NullPointerException in Experiment overview) updated by
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Status, Owner changed
- 1:01 PM Changeset [4208] by
- References #436: Create extension system for the web application …
- 1:01 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4208]) References #436: Create extension system for the web …
- 12:21 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by
- I think I have found the source for the NullPointerException. See #976.
- 12:19 PM Ticket #976 (NullPointerException in Experiment overview) created by
- The original report is found in #975. I have now been able to …
- 8:09 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by
- I don't think the NullPointerException has anything to do with the …
Apr 4, 2008:
- 6:37 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by
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Description changed
- 6:36 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) created by
- Working in an experiment containing 3 raw bioassays, all from the same …
- 2:44 PM Changeset [4207] by
- References #436: Create extension system for the web application …
- 2:44 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4207]) References #436: Create extension system for the web …
- 1:46 PM Ticket #954 (Array slides – Creating array slides using import plugin) updated by
- We have plans to create specifications for a more general item …
- 8:42 AM Changeset [4206] by
- References #436: Create extension system for the web application …
- 8:42 AM Ticket #436 (Create extension system for the web application) updated by
- (In [4206]) References #436: Create extension system for the web …
Apr 3, 2008:
- 8:24 PM Ticket #972 (Assign job to experiment when the job is created) updated by
- Plug-ins may do that, but none of them do it today except intensity …
- 8:05 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by
- The 'registered' property would be easier. This could be hooked into …
- 11:51 AM Ticket #972 (Assign job to experiment when the job is created) updated by
- Replying to nicklas: > Hmmm... the problem is that a job …
- 11:34 AM Ticket #974 (Link from raw bioassay to job that imported the raw data) created by
- This ticket relates to ticket:750 A user scenario involves going back …
Apr 2, 2008:
- 8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) updated by
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Description, Summary changed
- 8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) closed by
- fixed: (In [4205]) Fixes #973: Add a 'svn.update' target to the build file
- 8:41 PM Changeset [4205] by
- Fixes #973: Add a 'svn.update' target to the build file
- 7:54 PM Ticket #973 (Add a 'svn.update' target to the build file) created by
- This would simplify automatic generation of the documentation. After …
- 7:42 PM Ticket #972 (Assign job to experiment when the job is created) updated by
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Component, Type changed
Hmmm... the problem is that a job doesn't become part of an experiment … - 6:25 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by
- Basing the decision about creating a new data cube or not on …
- 5:44 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by
- As the 'registered' property and 'last updated' property can be …
- 5:06 PM Ticket #972 (Assign job to experiment when the job is created) created by
- This ticket concerns jobs running in experiments. Typically, a user …
- 1:46 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) closed by
- invalid: This is problem with Tomcat.
- 1:26 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) updated by
- I just stopped base2 in tomcat manager, deleted the …
- 1:20 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) created by
- I just upgraded our dev server (system info below) […] and found …
- 12:43 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) created by
- From the mailing list: …
- 12:43 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) updated by
- Great, thanks. Tested. Works :-)
- 10:44 AM Changeset [4204] by
- Fixes #969: Annotation importer doesn't save "Owned by ..." parameter …
- 10:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) closed by
- fixed: (In [4204]) Fixes #969: Annotation importer doesn't save "Owned by …
- 9:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) updated by
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Status, Owner changed
- 9:43 AM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) closed by
- fixed: (In [4203]) Fixes #963: New hybridization... button on labelled …
- 9:43 AM Changeset [4203] by
- Fixes #963: New hybridization... button on labelled extract page …
- 9:25 AM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by
- This ticket is a bit related to #108. In fact, both can be solved at …
Apr 1, 2008:
- 8:07 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) updated by
- Thanks for looking into it.
- 7:41 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by
- The current limit is hardcoded in the code: …
- 7:39 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) updated by
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Type changed
- 7:39 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by
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Type changed
- 7:39 PM Ticket #967 (Assign the parent directory permissions to new files/directories) updated by
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Type changed
- 7:24 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) created by
- It seems like the annotation importer doesn't save which option has …
- 3:30 PM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) created by
- Feature mismatch error handling when importing raw data concerns how …
- 3:19 PM Ticket #967 (Assign the parent directory permissions to new files/directories) updated by
- sorry... this is not a defect, it's a suggestion, please edit!
- 3:18 PM Ticket #967 (Assign the parent directory permissions to new files/directories) created by
- I made a /home/shared folder and gave it Everyone RU permissions. The …
- 2:55 PM Changeset [4202] by
- References #436: Create extension system for the web application All …
- 2:55 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4202]) References #436: Create extension system for the web …
- 2:43 PM Ticket #966 (Registered and possibly last updated – add to all/most items) created by
- Some items, such as Samples, have a Registered property, i.e., the …
- 2:25 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) created by
- This ticket is somewhat related to ticket:962 but more specifically …
- 2:06 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by
- Will changing the limitation involve code changes or is it something …
Mar 31, 2008:
- 9:43 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) updated by
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Milestone, Owner, Status changed
- 8:56 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by
- The more complex a query is the longer time it will take to execute …
- 8:43 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) updated by
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Description changed
Hmm... would it be possible to convert the list to something that … - 8:41 PM Ticket #964 (Support preset filter list with null/not null values) created by
- Currently, when a preset filter uses a list of predefined values you …
- 2:59 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by
- I will test this soon. Thanks for the fix. Bob.
- 2:58 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) created by
- When clicking on the "New hybridization..." action button on a labeled …
- 12:44 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) created by
- When filtering an item list some columns that can only take a few …
- 12:13 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) created by
- If an item list contains many items you may need to use a filter to be …
- 10:48 AM Changeset [4201] by
- Fixes #958: Document that the migration program is no longer actively …
- 10:48 AM Ticket #958 (Document that the migration program is no longer actively tested or ...) closed by
- fixed: (In [4201]) Fixes #958: Document that the migration program is no …
- 10:00 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) closed by
- fixed: (In [4200]) Fixes #960: Removing a user from a group doesn't work if …
- 10:00 AM Changeset [4200] by
- Fixes #960: Removing a user from a group doesn't work if the user is a …
- 9:59 AM Ticket #959 (Users may be duplicated in group member list for quota groups) closed by
- fixed: (In [4199]) Fixes #959: Users may be duplicated in group member list …
- 9:59 AM Changeset [4199] by
- Fixes #959: Users may be duplicated in group member list for quota groups
- 9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) updated by
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Status, Owner changed
- 9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) created by
- How to reproduce: 1. Create a group G and assign it some quota 2. …
Mar 28, 2008:
- 2:54 PM Ticket #959 (Users may be duplicated in group member list for quota groups) updated by
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Owner, Status changed
- 2:52 PM Ticket #959 (Users may be duplicated in group member list for quota groups) created by
- How to reproduce: 1. Create two groups, A and B. Assign quota to one …
- 2:42 PM Ticket #958 (Document that the migration program is no longer actively tested or ...) created by
- There is a section about the migration in the docbook documentation.
- 2:41 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4198]) References #436: Create extension system for the web …
- 2:41 PM Changeset [4198] by
- References #436: Create extension system for the web application …
Mar 27, 2008:
- 8:56 AM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) created by
- The first case was a filtering plug-in which caused the raw data links …
- 8:36 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) closed by
- fixed: (In [4197]) Fixes #956: Spot image generation throws …
- 8:36 AM Changeset [4197] by
- Fixes #956: Spot image generation throws NullPointerException if a …
- 8:06 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) updated by
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Status, Description changed
- 8:02 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) created by
- Here is the stacktrace (from BASE 2.4.5): […] See also: …
Mar 26, 2008:
- 7:13 PM Ticket #954 (Array slides – Creating array slides using import plugin) updated by
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Summary, Description, Milestone changed
- 7:12 PM Ticket #955 (Array slides – make test for barcode uniqueness) created by
- As mentioned in the BASE core specifications enforcing array slide …
- 6:16 PM Ticket #954 (Array slides – Creating array slides using import plugin) created by
- In BASE2, array slides can be created one-by-one or by using the …
Mar 25, 2008:
- 10:01 AM Changeset [4196] by
- Fixes #952: Update MySQL JDBC driver to a newer version
- 10:01 AM Ticket #952 (Update MySQL JDBC driver to a newer version) closed by
- fixed: (In [4196]) Fixes #952: Update MySQL JDBC driver to a newer version
- 10:00 AM Ticket #952 (Update MySQL JDBC driver to a newer version) updated by
-
Summary changed
- 9:28 AM Ticket #952 (Update MySQL JDBC driver to a newer version) updated by
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Owner, Status changed
- 9:08 AM Changeset [4195] by
- Merged patch release 2.6.1 to the trunk.
- 9:07 AM ReleaseProcedure edited by
- Corrected merge instructions (diff)
- 9:02 AM ReleaseProcedure edited by
- Updating release procedure (diff)
- 8:50 AM Milestone BASE 2.6.1 completed
- Bug fixes for 2.6. Revision log: log:branches/2.6-stable@4156:4191
- 8:43 AM DownloadPage edited by
- Added 2.6.1 for download (diff)
- 8:31 AM Changeset [4194] by
- Changes for future release 2.6.2
- 8:28 AM Changeset [4193] by
- Tagging version 2.6.1
- 8:10 AM Changeset [4192] by
- Preparing release 2.6.1
Mar 20, 2008:
- 1:29 PM Changeset [4191] by
- Fixes #953: Add 'useServerPrepStmts=true' to db.url setting in …
- 1:29 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) closed by
- fixed: (In [4191]) Fixes #953: Add 'useServerPrepStmts=true' to db.url …
- 1:02 PM Changeset [4190] by
- Fixed compilation error.
- 12:51 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) created by
- It may be that the lack of this configuration option disables the use …
- 12:48 PM Ticket #952 (Update MySQL JDBC driver to a newer version) created by
- We are currently using 5.0.6. 5.0.8 is available and also 5.1.5. We …
- 12:17 PM Changeset [4189] by
- Deleting obsolete branch
- 12:16 PM Changeset [4188] by
- Deleting obsolete branch
- 12:15 PM Changeset [4187] by
- Merged extensions branch into trunk
- 12:00 PM Changeset [4186] by
- Merged log:trunk#4177:4179 into extensions branch
- 11:57 AM Changeset [4185] by
- References #436: Create extension system for the web application More …
- 11:57 AM Ticket #436 (Create extension system for the web application) updated by
- (In [4185]) References #436: Create extension system for the web …
- 11:54 AM Changeset [4184] by
- References #436: Create extension system for the web application …
- 11:54 AM Ticket #436 (Create extension system for the web application) updated by
- (In [4184]) References #436: Create extension system for the web …
Mar 19, 2008:
- 2:30 PM Ticket #436 (Create extension system for the web application) updated by
-
Description changed
- 1:16 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) closed by
- fixed: (In [4183]) Fixes #951: JarClassLoader.getInstance always creates a …
- 1:16 PM Changeset [4183] by
- Fixes #951: JarClassLoader.getInstance always creates a new class …
- 12:46 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) created by
- The code that checks for a changed JAR file is incorrect and includes …
Mar 18, 2008:
- 7:51 PM Ticket #950 (Exception when setting active project to none) closed by
- duplicate: See #947
- 5:24 PM Ticket #950 (Exception when setting active project to none) created by
- If a user logs in, sets the active project to any project then sets it …
- 2:00 PM Changeset [4182] by
- Added new image
- 1:59 PM Changeset [4181] by
- References #436: Create extension system for the web application Most …
- 1:59 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4181]) References #436: Create extension system for the web …
Mar 17, 2008:
- 2:40 PM Changeset [4180] by
- References #436: Create extension system for the web application …
- 2:40 PM Ticket #436 (Create extension system for the web application) updated by
- (In [4180]) References #436: Create extension system for the web …
- 9:28 AM Changeset [4179] by
- Corrected typo.
Mar 14, 2008:
- 12:50 PM RobotsTxt edited by
- Disallow /changeset for robots (diff)
- 12:40 PM RobotsTxt edited by
- Disallow robots (diff)
- 11:24 AM ReleaseProcedure edited by
- Changed release manager and merge master (diff)
- 11:17 AM Changeset [4178] by
- Merged log:trunk#4160:4177 into extensions branch
- 11:13 AM Changeset [4177] by
- Fixes #948: Change web application to servlet api 2.5 instead of 2.4 …
- 11:13 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) updated by
- (In [4177]) Fixes #948: Change web application to servlet api 2.5 …
- 11:10 AM Changeset [4176] by
- Fixes #948: Change web application to servlet api 2.5 instead of 2.4
- 11:10 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) closed by
- fixed: (In [4176]) Fixes #948: Change web application to servlet api 2.5 …
- 9:47 AM Changeset [4175] by
- Fixes #949: Installation documentation has incorrect information about …
- 9:47 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) closed by
- fixed: (In [4175]) Fixes #949: Installation documentation has incorrect …
- 9:33 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) created by
- Quotes from the documentation: "Download and install Java SDK 1.5..." …
- 9:18 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) created by
- I need to get the "context path" (=the root path of the web …
Mar 13, 2008:
- 8:36 AM Changeset [4174] by
- Fixes #947: "not-null property references a null or transient value" …
- 8:36 AM Ticket #947 ("not-null property references a null or transient value" error on logout) closed by
- fixed: (In [4174]) Fixes #947: "not-null property references a null or …
- 8:31 AM Ticket #947 ("not-null property references a null or transient value" error on logout) updated by
-
Summary, Priority, Status, Milestone, Owner changed
The exception happens when saving user settings to the database. It …
Mar 12, 2008:
- 11:27 PM Ticket #947 ("not-null property references a null or transient value" error on logout) updated by
- Update... Impersonating a user (who has login disabled) and then …
- 11:23 PM Ticket #947 ("not-null property references a null or transient value" error on logout) created by
- I'm not sure how to replicate this but thought I'd post the stack …
- 12:50 PM Changeset [4173] by
- Fixes #945: Build: data/helptexts.xml is not removed by ant clean
- 12:50 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) closed by
- fixed: (In [4173]) Fixes #945: Build: data/helptexts.xml is not removed by …
- 12:49 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) updated by
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Milestone, Owner, Status changed
- 11:49 AM Ticket #946 (Job agents list view don't display running jobs) closed by
- fixed: (In [4172]) Fixes #946: Job agents list view don't display running jobs
- 11:49 AM Changeset [4172] by
- Fixes #946: Job agents list view don't display running jobs
- 11:24 AM Ticket #946 (Job agents list view don't display running jobs) updated by
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Owner, Status changed
- 11:24 AM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) closed by
- fixed: (In [4171]) Fixes #944: Synchronisation issues when sending ABORT …
- 11:24 AM Changeset [4171] by
- Fixes #944: Synchronisation issues when sending ABORT signal to a job …
- 11:01 AM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) updated by
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Owner, Status changed
- 10:57 AM Ticket #946 (Job agents list view don't display running jobs) created by
- From the mailing list: > After upgrade from BASE 2.4.6 to 2.6.0 I …
Mar 10, 2008:
- 4:46 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) created by
- I found this while doing a diff between a fresh svn checkout and my …
- 1:17 PM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) created by
- Consider the following code: […] It is the standard way of …
- 11:11 AM Ticket #943 (Base1PluginExecuter should import reporterlists) updated by
-
Status, Owner changed
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