Timeline
Mar 3, 2008:
- 9:20 AM Ticket #941 (SQLException when exporting "merged on reporters" with BioAssaySet ...) closed by
- fixed: (In [4167]) Fixes #941: SQLException when exporting "merged on …
- 9:20 AM Changeset [4167] by
- Fixes #941: SQLException when exporting "merged on reporters" with …
- 8:43 AM Changeset [4166] by
- Fixes #938: BioAssaySetExporter?: last line can have missing columns
- 8:43 AM Ticket #938 (BioAssaySetExporter: last line can have missing columns) closed by
- fixed: (In [4166]) Fixes #938: BioAssaySetExporter?: last line can have …
- 8:33 AM Ticket #942 (BioAssaySetExporter should export ratio values instead of log-ratio ...) closed by
- fixed: (In [4165]) Fixes #942: BioAssaySetExporter? should export ratio values …
- 8:33 AM Changeset [4165] by
- Fixes #942: BioAssaySetExporter? should export ratio values instead of …
- 8:09 AM Ticket #942 (BioAssaySetExporter should export ratio values instead of log-ratio ...) created by
- MeV expects ratio-values. Using the "Launch MeV" tool in BASE loads …
Feb 29, 2008:
- 1:48 PM Ticket #941 (SQLException when exporting "merged on reporters" with BioAssaySet ...) created by
- This may be related to #939, but I am not sure. In any case, here is …
- 8:18 AM Ticket #940 (Can't generate web services wsdl files with ant 1.7) closed by
- fixed: (In [4164]) Fixes #940: Can't generate web services wsdl files with ant 1.7
- 8:18 AM Changeset [4164] by
- Fixes #940: Can't generate web services wsdl files with ant 1.7
Feb 28, 2008:
- 8:16 PM Ticket #940 (Can't generate web services wsdl files with ant 1.7) created by
- Compiling BASE with ant 1.7.0 fails when generating wsdl files. The …
- 5:09 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) created by
- I am finding problems with BASEfile export, averaged over reporter or …
- 2:33 PM Ticket #938 (BioAssaySetExporter: last line can have missing columns) created by
- This little bug was preventing base1 hierarchical clustering (due to …
- 10:54 AM Changeset [4163] by
- References #436: Create extension system for the web application The …
Feb 26, 2008:
- 7:54 PM Changeset [4162] by
- References #937: Spelling of method name: Xml --> XML
- 1:28 PM Changeset [4161] by
- Merged log:trunk#4159:4160 into extensions branch
- 1:21 PM Changeset [4160] by
- Fixes #937: Extend XMLUtil with methods that can validate an XML file …
- 1:21 PM Ticket #937 (Extend XMLUtil with methods that can validate an XML file agains a ...) closed by
- fixed: (In [4160]) Fixes #937: Extend XMLUtil with methods that can validate …
- 11:55 AM Ticket #937 (Extend XMLUtil with methods that can validate an XML file agains a ...) created by
- This is needed for the the xml files used by the Extensions API (see …
- 10:59 AM ReleaseProcedure edited by
- Added document generation note for trac. (diff)
Feb 25, 2008:
- 5:56 PM Ticket #935 (jobagent status) closed by
- invalid: Because I was testing my script on a server that was to old…
- 12:01 PM Ticket #936 (Clearer exception from jobagent) closed by
- worksforme: This is probably because the log4j has been configured to print log …
- 11:40 AM Ticket #936 (Clearer exception from jobagent) created by
- When doing a 'jobagent.sh info' on a jobagent I get a ConnectException? …
- 11:32 AM Ticket #935 (jobagent status) created by
- The documentation about jobagent.sh describes the command status but …
- 11:01 AM Changeset [4159] by
- Changes for future release 2.6.1
- 10:54 AM Milestone BASE 2.6 completed
- The major aim with this milestone is to fix all issues related to …
- 10:54 AM DownloadPage edited by
- (diff)
- 10:52 AM DownloadPage edited by
- (diff)
- 10:52 AM DownloadPage edited by
- added the .0 (diff)
- 10:50 AM DownloadPage edited by
- added 2.6 release (diff)
Feb 22, 2008:
- 2:47 PM Changeset [4158] by
- References #436: Create extension system for the web application …
- 2:28 PM Changeset [4157] by
- References #436: Creating branch for prototyping web extensions
Feb 21, 2008:
- 6:31 PM DownloadPage edited by
- Removed links to packages older than 2.5 (diff)
- 4:28 PM Changeset [4156] by
- Tagging version 2.6
- 2:17 PM Ticket #934 (Move the BASE subversion repository to the new server) created by
- The new URL of the subversion repository is: …
- 11:09 AM WikiStart edited by
- (diff)
- 10:48 AM Changeset [4155] by
- Preparing release 2.6.0
- 10:47 AM Changeset [4154] by
- Changes for future release 2.7
- 10:44 AM Changeset [4153] by
- Forking new minor version 2.6 branch
- 10:43 AM Changeset [4152] by
- Updated credits.txt before 2.6 release
- 10:36 AM WikiStart edited by
- Link to correct version of GPL (diff)
- 9:14 AM Ticket #834 (Trashcan cannot be emptied) closed by
- invalid: Since there is no new information about this, I close this ticket as …
- 7:44 AM Ticket #933 (Create extension points for some selected places in the web client) created by
- Depends on #436. An extension point is needed in the bioassayset tree …
- 7:41 AM Ticket #932 (Convert the MeV launcher to an extension) created by
- Depends on #436
Feb 20, 2008:
- 11:46 AM Changeset [4151] by
- Base-hacks site has been moved to a new location - updated links
- 11:25 AM Changeset [4150] by
- Base-hacks has been moved to a new location - updated link in documentation
- 10:49 AM DeveloperInformation edited by
- Location for testdata has changed (diff)
Feb 19, 2008:
- 12:50 PM Ticket #621 (Write 'Plate' section) closed by
- duplicate: see #617
- 11:00 AM Changeset [4149] by
- Fixed some typos in the documentation
- 8:36 AM Ticket #930 (Read 'Server settings' section) closed by
- fixed: (In [4148]) Fixes #930: Read 'Server settings' section
- 8:36 AM Changeset [4148] by
- Fixes #930: Read 'Server settings' section
Feb 18, 2008:
- 2:34 PM Ticket #896 (Stop generating too long URL:s) closed by
- fixed: Have now worked through the 'roles' test procedure and not found any …
- 2:18 PM Changeset [4147] by
- References #868: Support for chips with multiple arrays Fixes broken …
- 2:15 PM Changeset [4146] by
- Typo
- 1:16 PM Changeset [4145] by
- References #909: Move some static fields from AbstractFlatFileImporter? …
- 11:33 AM Changeset [4144] by
- References #930 Ready for reading
Feb 15, 2008:
- 1:41 PM Changeset [4143] by
- References #896: Stop generating too long URL:s The POST is now in …
- 10:30 AM Ticket #931 (Share items to EVERYONE without SHARE_TO_EVERYONE permission) closed by
- fixed: (In [4142]) Fixes #931: Share items to EVERYONE without …
- 10:30 AM Changeset [4142] by
- Fixes #931: Share items to EVERYONE without SHARE_TO_EVERYONE permission
- 9:59 AM Ticket #931 (Share items to EVERYONE without SHARE_TO_EVERYONE permission) created by
- This is somewhat related to ticket #929. It seems like there is …
Feb 13, 2008:
- 3:10 PM Ticket #889 (Clicking "Help" throws a Python error) closed by
- fixed
- 1:33 PM Changeset [4141] by
- Fixes #929: An existing share to Everyone may block sharing an item to …
- 1:33 PM Ticket #929 (An existing share to Everyone may block sharing an item to others if ...) closed by
- fixed: (In [4141]) Fixes #929: An existing share to Everyone may block …
- 1:19 PM Ticket #930 (Read 'Server settings' section) created by
- The current documentation has no section that covers …
- 11:32 AM Ticket #889 (Clicking "Help" throws a Python error) reopened by
- I think the fix only works for new installations. It will not update …
- 11:09 AM Changeset [4140] by
- Fixes #889 Clicking "Help" throws a Python error. Changed an invalid link
- 11:09 AM Ticket #889 (Clicking "Help" throws a Python error) closed by
- fixed: (In [4140]) Fixes #889 Clicking "Help" throws a Python error. Changed …
- 9:24 AM Changeset [4139] by
- Fixed Javadoc warnings
Feb 12, 2008:
- 7:00 PM Ticket #929 (An existing share to Everyone may block sharing an item to others if ...) created by
- If I am a normal user without "share to Everyone" permissions, it is …
- 6:58 AM Changeset [4138] by
- Fixes #928
- 6:58 AM Ticket #928 (Can't import feature to an array design which has metadata about ...) closed by
- fixed: (In [4138]) Fixes #928
Feb 11, 2008:
- 2:01 PM Ticket #928 (Can't import feature to an array design which has metadata about ...) created by
- 1. Create an array design and select a platform which has a metadata …
- 11:56 AM Ticket #909 (Move some static fields from AbstractFlatFileImporter to a separate class) closed by
- fixed
- 11:44 AM Ticket #924 (FAQ 2 in Chapter 28. Reporters related FAQs is outdated) closed by
- fixed: Fixed in [4137]
- 11:43 AM Changeset [4137] by
- Fixes #928
- 11:36 AM Ticket #894 (Support for array designs with other feature identification methods ...) closed by
- fixed: Everything seems to be ok. Test programs run fine.
- 11:12 AM WikiStart edited by
- (diff)
- 10:53 AM Changeset [4136] by
- Format of progress output was incosistent
Feb 8, 2008:
- 5:43 PM Ticket #927 (Image Macro fails on Feature Trac Page) created by
- Image macro fails on feature page http://base.thep.lu.se/wiki/Features
- 5:08 PM MailingLists edited by
- (diff)
- 3:03 PM Changeset [4135] by
- Fixes #868: Support for chips with multiple arrays Found an …
- 2:48 PM Changeset [4134] by
- Fixes #921: Experiment overview should be updated with support for …
- 2:48 PM Ticket #921 (Experiment overview should be updated with support for mutli-array slides) closed by
- fixed: (In [4134]) Fixes #921: Experiment overview should be updated with …
- 11:54 AM Changeset [4133] by
- References #868: Support for chips with multiple arrays Fixed some …
- 11:18 AM Ticket #926 (Update IlluminaRawDataImporter to set the RawBioAssay.arrayNum property) closed by
- fixed: (In [4132]) Fixes #926: Update IlluminaRawDataImporter? to set the …
- 11:18 AM Changeset [4132] by
- Fixes #926: Update IlluminaRawDataImporter? to set the …
- 9:55 AM Changeset [4131] by
- Fixes #868: Support for chips with multiple arrays
- 9:55 AM Ticket #868 (Support for chips with multiple arrays) closed by
- fixed: (In [4131]) Fixes #868: Support for chips with multiple arrays
- 8:52 AM Ticket #926 (Update IlluminaRawDataImporter to set the RawBioAssay.arrayNum property) created by
- The last character in the column names the Illumina Beadstudio files …
Feb 7, 2008:
- 11:56 AM Ticket #922 (Migration should be updated to transfer channel information) closed by
- wontfix: No longer possible with the updated solution for #868.
- 10:17 AM Ticket #925 (A candidate FAQ to Chapter 28. Reporters related FAQs) created by
- This siutation should be covered in the FAQ: In some cases the …
- 10:13 AM Ticket #924 (FAQ 2 in Chapter 28. Reporters related FAQs is outdated) created by
- Reporters can be deleted with a plug-in now, there is no need to fall …
- 10:08 AM Changeset [4130] by
- Added information on how to resolve missing probe set situations.
- 8:30 AM Changeset [4129] by
- Fixes #923: Possible NullPointerException? in ExperimentOverview?
- 8:30 AM Ticket #923 (Possible NullPointerException in ExperimentOverview) closed by
- fixed: (In [4129]) Fixes #923: Possible NullPointerException? in ExperimentOverview?
- 8:29 AM Ticket #923 (Possible NullPointerException in ExperimentOverview) created by
- The method addHybridization() has null check on the 'scan' variable on …
Feb 6, 2008:
- 2:34 PM MailingLists edited by
- Fixed spelling. (diff)
- 9:18 AM Ticket #922 (Migration should be updated to transfer channel information) created by
- See #868
- 9:17 AM Ticket #921 (Experiment overview should be updated with support for mutli-array slides) created by
- See #868
Feb 5, 2008:
- 12:24 PM Ticket #636 (Kill a running job) closed by
- fixed: Reopen or create new tickets if there are problems or support for …
- 12:23 PM Changeset [4128] by
- References #636: Kill a running job Support for interruption in some …
- 11:40 AM Ticket #893 (Add support for setting a job's status to ABORTING) closed by
- fixed: (In [4127]) Fixes #893: Add support for setting a job's status to ABORTING
- 11:40 AM Changeset [4127] by
- Fixes #893: Add support for setting a job's status to ABORTING
- 9:33 AM Ticket #892 (Abort long-running queries) closed by
- fixed: DataQuery:s also has the potential of taking long time. This includes …
- 9:32 AM Ticket #920 (Add support for aborting queries using a StatlessSession) created by
- Many of our performance-sensitive queries use a StatelessSession? since …
- 8:57 AM Ticket #919 (Long query against dynamic database may cause session to timeout) closed by
- fixed: Fixed in [4126]
- 8:39 AM Changeset [4126] by
- Fxies #919: Long query against dynamic database may cause session to …
- 8:06 AM Ticket #919 (Long query against dynamic database may cause session to timeout) created by
- This is the same as #794, but is seems like it was never implemented …
Feb 4, 2008:
- 8:29 PM Changeset [4125] by
- Fixes #918: Adding multiple new DataFileTypes? to a platform or variant …
- 8:29 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) closed by
- fixed: (In [4125]) Fixes #918: Adding multiple new DataFileTypes? to a …
- 8:22 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) created by
- This happens in the Illumina installation plug-ins (see …
- 7:20 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) closed by
- fixed: Now tested on windows.
- 2:36 PM Changeset [4124] by
- Fixes #915: NullPointerException? when a raw data type is missing Use …
- 2:36 PM Ticket #915 (NullPointerException when a raw data type is missing) closed by
- fixed: (In [4124]) Fixes #915: NullPointerException? when a raw data type is …
- 1:32 PM Changeset [4123] by
- Fixes #917: The progress reporter for a job should update the database …
- 1:32 PM Ticket #917 (The progress reporter for a job should update the database if the ...) closed by
- fixed: (In [4123]) Fixes #917: The progress reporter for a job should update …
- 1:26 PM Ticket #917 (The progress reporter for a job should update the database if the ...) created by
- The current rule is that the progress is only updated if at least 5 …
- 1:14 PM Changeset [4122] by
- References #913: Plug-in JAR paths should support paths relative to …
- 1:02 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) reopened by
- Reopens this ticket because I think the implementation is not …
- 12:17 PM Changeset [4121] by
- Fixes #916: Base1PluginExecuter commits transaction even in case of a …
- 12:17 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) closed by
- fixed: (In [4121]) Fixes #916: Base1PluginExecuter commits transaction even …
- 12:09 PM Changeset [4120] by
- References #636: Kill a running job All core plug-ins can now be …
- 12:01 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) created by
- If there is an error during the execution of a BASE 1 plug-in using …
- 10:00 AM Ticket #915 (NullPointerException when a raw data type is missing) created by
- If a raw data type is removed from the raw-data-types.xml file and …
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