Timeline
Feb 11, 2008:
- 2:01 PM Ticket #928 (Can't import feature to an array design which has metadata about ...) created by
- 1. Create an array design and select a platform which has a metadata …
- 11:56 AM Ticket #909 (Move some static fields from AbstractFlatFileImporter to a separate class) closed by
- fixed
- 11:44 AM Ticket #924 (FAQ 2 in Chapter 28. Reporters related FAQs is outdated) closed by
- fixed: Fixed in [4137]
- 11:43 AM Changeset [4137] by
- Fixes #928
- 11:36 AM Ticket #894 (Support for array designs with other feature identification methods ...) closed by
- fixed: Everything seems to be ok. Test programs run fine.
- 11:12 AM WikiStart edited by
- (diff)
- 10:53 AM Changeset [4136] by
- Format of progress output was incosistent
Feb 8, 2008:
- 5:43 PM Ticket #927 (Image Macro fails on Feature Trac Page) created by
- Image macro fails on feature page http://base.thep.lu.se/wiki/Features
- 5:08 PM MailingLists edited by
- (diff)
- 3:03 PM Changeset [4135] by
- Fixes #868: Support for chips with multiple arrays Found an …
- 2:48 PM Changeset [4134] by
- Fixes #921: Experiment overview should be updated with support for …
- 2:48 PM Ticket #921 (Experiment overview should be updated with support for mutli-array slides) closed by
- fixed: (In [4134]) Fixes #921: Experiment overview should be updated with …
- 11:54 AM Changeset [4133] by
- References #868: Support for chips with multiple arrays Fixed some …
- 11:18 AM Ticket #926 (Update IlluminaRawDataImporter to set the RawBioAssay.arrayNum property) closed by
- fixed: (In [4132]) Fixes #926: Update IlluminaRawDataImporter? to set the …
- 11:18 AM Changeset [4132] by
- Fixes #926: Update IlluminaRawDataImporter? to set the …
- 9:55 AM Changeset [4131] by
- Fixes #868: Support for chips with multiple arrays
- 9:55 AM Ticket #868 (Support for chips with multiple arrays) closed by
- fixed: (In [4131]) Fixes #868: Support for chips with multiple arrays
- 8:52 AM Ticket #926 (Update IlluminaRawDataImporter to set the RawBioAssay.arrayNum property) created by
- The last character in the column names the Illumina Beadstudio files …
Feb 7, 2008:
- 11:56 AM Ticket #922 (Migration should be updated to transfer channel information) closed by
- wontfix: No longer possible with the updated solution for #868.
- 10:17 AM Ticket #925 (A candidate FAQ to Chapter 28. Reporters related FAQs) created by
- This siutation should be covered in the FAQ: In some cases the …
- 10:13 AM Ticket #924 (FAQ 2 in Chapter 28. Reporters related FAQs is outdated) created by
- Reporters can be deleted with a plug-in now, there is no need to fall …
- 10:08 AM Changeset [4130] by
- Added information on how to resolve missing probe set situations.
- 8:30 AM Changeset [4129] by
- Fixes #923: Possible NullPointerException? in ExperimentOverview?
- 8:30 AM Ticket #923 (Possible NullPointerException in ExperimentOverview) closed by
- fixed: (In [4129]) Fixes #923: Possible NullPointerException? in ExperimentOverview?
- 8:29 AM Ticket #923 (Possible NullPointerException in ExperimentOverview) created by
- The method addHybridization() has null check on the 'scan' variable on …
Feb 6, 2008:
- 2:34 PM MailingLists edited by
- Fixed spelling. (diff)
- 9:18 AM Ticket #922 (Migration should be updated to transfer channel information) created by
- See #868
- 9:17 AM Ticket #921 (Experiment overview should be updated with support for mutli-array slides) created by
- See #868
Feb 5, 2008:
- 12:24 PM Ticket #636 (Kill a running job) closed by
- fixed: Reopen or create new tickets if there are problems or support for …
- 12:23 PM Changeset [4128] by
- References #636: Kill a running job Support for interruption in some …
- 11:40 AM Ticket #893 (Add support for setting a job's status to ABORTING) closed by
- fixed: (In [4127]) Fixes #893: Add support for setting a job's status to ABORTING
- 11:40 AM Changeset [4127] by
- Fixes #893: Add support for setting a job's status to ABORTING
- 9:33 AM Ticket #892 (Abort long-running queries) closed by
- fixed: DataQuery:s also has the potential of taking long time. This includes …
- 9:32 AM Ticket #920 (Add support for aborting queries using a StatlessSession) created by
- Many of our performance-sensitive queries use a StatelessSession? since …
- 8:57 AM Ticket #919 (Long query against dynamic database may cause session to timeout) closed by
- fixed: Fixed in [4126]
- 8:39 AM Changeset [4126] by
- Fxies #919: Long query against dynamic database may cause session to …
- 8:06 AM Ticket #919 (Long query against dynamic database may cause session to timeout) created by
- This is the same as #794, but is seems like it was never implemented …
Feb 4, 2008:
- 8:29 PM Changeset [4125] by
- Fixes #918: Adding multiple new DataFileTypes? to a platform or variant …
- 8:29 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) closed by
- fixed: (In [4125]) Fixes #918: Adding multiple new DataFileTypes? to a …
- 8:22 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) created by
- This happens in the Illumina installation plug-ins (see …
- 7:20 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) closed by
- fixed: Now tested on windows.
- 2:36 PM Changeset [4124] by
- Fixes #915: NullPointerException? when a raw data type is missing Use …
- 2:36 PM Ticket #915 (NullPointerException when a raw data type is missing) closed by
- fixed: (In [4124]) Fixes #915: NullPointerException? when a raw data type is …
- 1:32 PM Changeset [4123] by
- Fixes #917: The progress reporter for a job should update the database …
- 1:32 PM Ticket #917 (The progress reporter for a job should update the database if the ...) closed by
- fixed: (In [4123]) Fixes #917: The progress reporter for a job should update …
- 1:26 PM Ticket #917 (The progress reporter for a job should update the database if the ...) created by
- The current rule is that the progress is only updated if at least 5 …
- 1:14 PM Changeset [4122] by
- References #913: Plug-in JAR paths should support paths relative to …
- 1:02 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) reopened by
- Reopens this ticket because I think the implementation is not …
- 12:17 PM Changeset [4121] by
- Fixes #916: Base1PluginExecuter commits transaction even in case of a …
- 12:17 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) closed by
- fixed: (In [4121]) Fixes #916: Base1PluginExecuter commits transaction even …
- 12:09 PM Changeset [4120] by
- References #636: Kill a running job All core plug-ins can now be …
- 12:01 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) created by
- If there is an error during the execution of a BASE 1 plug-in using …
- 10:00 AM Ticket #915 (NullPointerException when a raw data type is missing) created by
- If a raw data type is removed from the raw-data-types.xml file and …
Feb 1, 2008:
- 4:31 PM Changeset [4119] by
- References #892: Abort long-running queries Implemented a way to …
- 3:00 PM Changeset [4118] by
- References #636: Kill a running job Implemented support for …
- 10:36 AM Changeset [4117] by
- References #902: Support for multiple configuration files for raw data …
Jan 31, 2008:
- 4:39 PM Changeset [4116] by
- Fixes #914 Make PluginConfigurationImporter? smarter
- 4:39 PM Ticket #914 (Make PluginConfigurationImporter smarter) closed by
- fixed: (In [4116]) Fixes #914 Make PluginConfigurationImporter? smarter
- 1:55 PM Ticket #912 (Plugin auto-install can not perform import when not all ...) closed by
- fixed: (In [4115]) Fixes #912 Plugin auto-install can not perform import when …
- 1:55 PM Changeset [4115] by
- Fixes #912 Plugin auto-install can not perform import when not all …
- 1:34 PM Ticket #914 (Make PluginConfigurationImporter smarter) created by
- As it is now the importer lists all configurations from an import …
- 11:27 AM Changeset [4114] by
- References #913: Added some documentation
- 11:21 AM Changeset [4113] by
- Fixes #913: Plug-in JAR paths should support paths relative to the …
- 11:21 AM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) closed by
- fixed: (In [4113]) Fixes #913: Plug-in JAR paths should support paths …
- 10:44 AM Ticket #911 (Add support for having file validators and meta data extrators in ...) closed by
- fixed: (In [4112]) Fixes #911: Add support for having file validators and …
- 10:44 AM Changeset [4112] by
- Fixes #911: Add support for having file validators and meta data …
- 10:03 AM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) created by
- If the start of the plug-in JAR path matches the plugins.dir setting …
- 9:34 AM Ticket #912 (Plugin auto-install can not perform import when not all ...) created by
- This is because the configuration importer doesn't fully support …
- 8:47 AM Ticket #911 (Add support for having file validators and meta data extrators in ...) created by
- It should not be very difficult. Just add another field with the JAR …
- 8:37 AM Ticket #910 (Plug-ins ignore file set by the auto-detect file format function) closed by
- fixed: (In [4111]) Fixes #910: Plug-ins ignore file set by the auto-detect …
- 8:37 AM Changeset [4111] by
- Fixes #910: Plug-ins ignore file set by the auto-detect file format …
Jan 30, 2008:
- 1:44 PM Changeset [4110] by
- References #894 Removed an unnecessary value check. The check has …
- 1:01 PM Changeset [4109] by
- References #894 Allow 0 as a block number in BlockInfo?
- 12:12 PM Ticket #910 (Plug-ins ignore file set by the auto-detect file format function) created by
- This happens in the ReporterMapImporter? and in the …
- 11:13 AM Changeset [4108] by
- References #894: Support for array designs with other feature …
Jan 29, 2008:
- 2:52 PM Changeset [4107] by
- References #909: Move some static fields from AbstractFlatFileImporter? …
- 12:00 PM Ticket #909 (Move some static fields from AbstractFlatFileImporter to a separate class) created by
- The AbstractFlatFileImporter? class contains parameter declarations …
- 9:05 AM Ticket #908 (Exception when listing features of an array design) closed by
- fixed: (In [4106]) References #894. Fixes #908.
- 9:05 AM Changeset [4106] by
- References #894. Fixes #908.
Jan 28, 2008:
- 2:14 PM Ticket #908 (Exception when listing features of an array design) created by
- An exception is thrown when trying to view feature list page. …
- 1:52 PM Changeset [4105] by
- Fixes #907: "Test with file" function should be able to wrap input stream
- 1:52 PM Ticket #907 ("Test with file" function should be able to wrap input stream) closed by
- fixed: (In [4105]) Fixes #907: "Test with file" function should be able to …
- 1:29 PM Changeset [4104] by
- Fixes #906: FlatFileParser? should not always throw an exception if a …
- 1:29 PM Ticket #906 (FlatFileParser should not always throw an exception if a column header ...) closed by
- fixed: (In [4104]) Fixes #906: FlatFileParser? should not always throw an …
- 1:27 PM Ticket #907 ("Test with file" function should be able to wrap input stream) created by
- The "Test with file" function currently only support plain text files. …
- 1:11 PM Changeset [4103] by
- Typo
- 11:48 AM Ticket #906 (FlatFileParser should not always throw an exception if a column header ...) created by
- Calling FlatFileParser?.getMapper() for a column that is not present in …
- 11:07 AM Changeset [4102] by
- Fixes #905: AbstractFlatFileParser? aborts parsing if a parseHeaders() …
- 11:07 AM Ticket #905 (AbstractFlatFileParser aborts parsing if a parseHeaders() doesn't find ...) closed by
- fixed: (In [4102]) Fixes #905: AbstractFlatFileParser? aborts parsing if a …
- 11:02 AM Changeset [4101] by
- Fixes #904: Subclasses of AbstractFlatFileImporter? should be able to …
- 11:02 AM Ticket #904 (Subclasses of AbstractFlatFileImporter should be able to wrap the file ...) closed by
- fixed: (In [4101]) Fixes #904: Subclasses of AbstractFlatFileImporter? should …
- 10:54 AM Ticket #905 (AbstractFlatFileParser aborts parsing if a parseHeaders() doesn't find ...) created by
- This mainly affects multi-section file formats. The correct behavior …
- 8:10 AM Ticket #904 (Subclasses of AbstractFlatFileImporter should be able to wrap the file ...) created by
- This would, for example, make it possible to use the …
Jan 25, 2008:
- 8:07 AM Changeset [4100] by
- Fixes #888: Make dynamic table creation code more stable Removed …
- 8:07 AM Ticket #888 (Make dynamic table creation code more stable) closed by
- fixed: (In [4100]) Fixes #888: Make dynamic table creation code more stable …
Jan 23, 2008:
- 4:37 PM Changeset [4099] by
- References #888: Make dynamic table creation code more stable Now …
- 3:58 PM Ticket #903 (Experiment Explorer is slow) created by
- Here's some code which is pretty much identical to …
- 3:13 PM Changeset [4098] by
- Fixes #887: Internal job queue may start the same job more than once …
- 3:13 PM Ticket #887 (Internal job queue may start the same job more than once if running ...) closed by
- fixed: (In [4098]) Fixes #887: Internal job queue may start the same job more …
- 2:43 PM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) closed by
- fixed: (In [4097]) Fixes #900: Verify that multiple raw data spots on the …
- 2:43 PM Changeset [4097] by
- Fixes #900: Verify that multiple raw data spots on the same raw …
Jan 22, 2008:
- 2:22 PM Changeset [4096] by
- Fixes #902: Support for multiple configuration files for raw data …
- 2:22 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) closed by
- fixed: (In [4096]) Fixes #902: Support for multiple configuration files for …
- 12:15 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) created by
- The raw-data-types.xml and extended-properties.xml files are getting …
- 11:03 AM Ticket #877 (Illumina SNP validator and meta-data extractor) closed by
- invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/93
- 10:59 AM Ticket #875 (Create Illumina SNP raw data type) closed by
- invalid: Moved to BASE plug-ins:http://baseplugins.thep.lu.se/ticket/92
- 10:45 AM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) closed by
- invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/91
- 10:36 AM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) closed by
- invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/90
Jan 21, 2008:
- 5:10 PM Changeset [4095] by
- Merged patch release 2.5.1 to the trunk. Delta 2.5 - 2.5.1
- 1:07 PM Changeset [4094] by
- Fixed typo.
Jan 19, 2008:
- 7:41 PM DownloadPage edited by
- Corrected 2.5.1 release date. (diff)
Jan 18, 2008:
- 4:05 PM Changeset [4093] by
- Reverted to revision r4089
- 2:36 PM Milestone BASE 2.5.1 completed
- log:branches/2.5-stable@4048:4090
- 2:34 PM Changeset [4092] by
- Merged from 2.5.1 Correct
- 2:21 PM Changeset [4091] by
- Merged from 2.5.1
- 2:10 PM Changeset [4090] by
- Merged patch release 2.5.1 to the trunk. Delta 2.5.1 - 2.5
- 1:43 PM Changeset [4089] by
- Fixes #901: GuiContext? should implement the equals() method
- 1:43 PM Ticket #901 (GuiContext should implement the equals() method) closed by
- fixed: (In [4089]) Fixes #901: GuiContext? should implement the equals() method
- 1:34 PM DownloadPage edited by
- (diff)
- 1:26 PM Changeset [4088] by
- Changes for future release 2.5.2
- 1:22 PM Ticket #901 (GuiContext should implement the equals() method) created by
- It is hard to compare if two objects represents the same context otherwise.
- 12:52 PM Ticket #891 (Upgrade demo server to BASE 2.5) closed by
- fixed
- 12:47 PM Changeset [4087] by
- Tagging version 2.5.1
- 11:41 AM Changeset [4086] by
- Preparing release 2.5.1
Jan 17, 2008:
- 12:08 PM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) closed by
- fixed: (In [4085]) Fixes #899: Specify "source" and "target" options in …
- 12:08 PM Changeset [4085] by
- Fixes #899: Specify "source" and "target" options in <javac> tasks in …
- 11:53 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) closed by
- fixed: (In [4084]) Fixes #895: Add serialVersionUID to all classes that need …
- 11:53 AM Changeset [4084] by
- Fixes #895: Add serialVersionUID to all classes that need it but …
- 11:08 AM Changeset [4083] by
- References #894: Support for array designs with other feature …
- 9:42 AM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) created by
- This should not be allowed and will lead to problems when analysing. I …
- 9:37 AM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) created by
- The "source" specifies the java version of the source files. The …
- 9:27 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) created by
- It is better to have them as external projects. This will also give us …
Jan 16, 2008:
- 9:49 PM ReleaseProcedure edited by
- Added a note to upload the example code packages to download area. (diff)
- 9:43 PM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) closed by
- fixed
- 9:42 PM DeveloperInformation edited by
- Fixes ticket::886 (diff)
- 9:26 PM Ticket #897 (Potential temporary directory clash for plugins running through job agents) created by
- With modern multi-core machines there will probably be a desire to run …
- 7:55 PM WikiStart edited by
- (diff)
- 12:01 PM Ticket #896 (Stop generating too long URL:s) created by
- If a list page is configured to display many columns (around 50+), you …
Jan 15, 2008:
- 3:38 PM Changeset [4082] by
- Fixes #879: Add column holding the filename of last file used for …
- 3:38 PM Ticket #879 (Add column holding the filename of last file used for updating ...) closed by
- fixed: (In [4082]) Fixes #879: Add column holding the filename of last file …
- 3:00 PM Changeset [4081] by
- References #636: Kill a running job Updated UML diagram
- 2:58 PM Changeset [4080] by
- References #894: Support for array designs with other feature …
- 11:47 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) created by
- The serialVersionUID field is recommended for all Serializable …
- 7:54 AM Ticket #879 (Add column holding the filename of last file used for updating ...) reopened by
- Column declaration doesn't set max string length. No 'public static …
Jan 14, 2008:
- 3:01 PM Ticket #867 (Support for array designs without coordinate/position information for ...) closed by
- wontfix
- 3:00 PM Ticket #894 (Support for array designs with other feature identification methods ...) created by
- This ticket replaces #867. It had a slightly different angle, and the …
- 1:51 PM Changeset [4079] by
- Fixes #890: Ant target 'package.examples' fails when compiling webservices
- 1:51 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) closed by
- fixed: (In [4079]) Fixes #890: Ant target 'package.examples' fails when …
- 12:49 PM Ticket #893 (Add support for setting a job's status to ABORTING) created by
- Plug-ins that supports aborting may not always respond immediately. …
- 12:46 PM Ticket #892 (Abort long-running queries) created by
- A problem that became visible when working with #636 (Kill a running …
- 12:21 PM Changeset [4078] by
- References #636: Kill a running job * Signals are now working with …
Jan 12, 2008:
- 12:10 AM Changeset [4077] by
- Correcting typo.
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