Timeline



Jan 24, 2008:

5:58 PM Ticket #903 (Experiment Explorer is slow) updated by base
This fixes exploring the root bioassayset and filterless ones: CREATE …
5:42 PM Ticket #903 (Experiment Explorer is slow) updated by base
Side note: In BASE1 I often whizzed through a smallish (up to 100) …
5:30 PM Ticket #903 (Experiment Explorer is slow) updated by base
Here are the indexes that seem to restore Experiment Explorer …
4:35 PM Ticket #903 (Experiment Explorer is slow) updated by base
Thanks for the extra info and link to tickets/bugfixes. It seems like …

Jan 23, 2008:

4:47 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
The indexes that were removed were just copies of the primary key and …
4:37 PM Ticket #888 (Make dynamic table creation code more stable) updated by Nicklas Nordborg
Status, Owner changed
4:37 PM Changeset [4099] by Nicklas Nordborg
References #888: Make dynamic table creation code more stable Now …
4:37 PM Ticket #888 (Make dynamic table creation code more stable) updated by Nicklas Nordborg
(In [4099]) References #888: Make dynamic table creation code more …
4:07 PM Ticket #868 (Support for chips with multiple arrays) updated by base
Was just browsing the tickets and saw this. Just for info: Agilent …
4:00 PM Ticket #903 (Experiment Explorer is slow) updated by base
Just to clarify... there's some table scanning going on which I guess …
3:58 PM Ticket #903 (Experiment Explorer is slow) created by base
Here's some code which is pretty much identical to …
3:13 PM Changeset [4098] by Nicklas Nordborg
Fixes #887: Internal job queue may start the same job more than once …
3:13 PM Ticket #887 (Internal job queue may start the same job more than once if running ...) closed by Nicklas Nordborg
fixed: (In [4098]) Fixes #887: Internal job queue may start the same job more …
2:43 PM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) closed by Nicklas Nordborg
fixed: (In [4097]) Fixes #900: Verify that multiple raw data spots on the …
2:43 PM Changeset [4097] by Nicklas Nordborg
Fixes #900: Verify that multiple raw data spots on the same raw …
1:06 PM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) updated by Nicklas Nordborg
Status, Owner changed

Jan 22, 2008:

2:22 PM Changeset [4096] by Nicklas Nordborg
Fixes #902: Support for multiple configuration files for raw data …
2:22 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) closed by Nicklas Nordborg
fixed: (In [4096]) Fixes #902: Support for multiple configuration files for …
12:17 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) updated by Nicklas Nordborg
Status, Owner changed
12:15 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) created by Nicklas Nordborg
The raw-data-types.xml and extended-properties.xml files are getting …
11:03 AM Ticket #877 (Illumina SNP validator and meta-data extractor) closed by Martin Svensson
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/93
10:59 AM Ticket #875 (Create Illumina SNP raw data type) closed by Martin Svensson
invalid: Moved to BASE plug-ins:http://baseplugins.thep.lu.se/ticket/92
10:45 AM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) closed by Nicklas Nordborg
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/91
10:36 AM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) closed by Nicklas Nordborg
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/90

Jan 21, 2008:

5:10 PM Changeset [4095] by Johan Enell
Merged patch release 2.5.1 to the trunk. Delta 2.5 - 2.5.1
1:07 PM Changeset [4094] by Jari Häkkinen
Fixed typo.

Jan 19, 2008:

7:41 PM DownloadPage edited by Jari Häkkinen
Corrected 2.5.1 release date. (diff)

Jan 18, 2008:

4:05 PM Changeset [4093] by Johan Enell
Reverted to revision r4089
2:36 PM Milestone BASE 2.5.1 completed
log:branches/2.5-stable@4048:4090
2:34 PM Changeset [4092] by Johan Enell
Merged from 2.5.1 Correct
2:21 PM Changeset [4091] by Johan Enell
Merged from 2.5.1
2:10 PM Changeset [4090] by Johan Enell
Merged patch release 2.5.1 to the trunk. Delta 2.5.1 - 2.5
1:43 PM Changeset [4089] by Nicklas Nordborg
Fixes #901: GuiContext should implement the equals() method
1:43 PM Ticket #901 (GuiContext should implement the equals() method) closed by Nicklas Nordborg
fixed: (In [4089]) Fixes #901: GuiContext should implement the equals() method
1:34 PM DownloadPage edited by Johan Enell
(diff)
1:26 PM Changeset [4088] by Johan Enell
Changes for future release 2.5.2
1:22 PM Ticket #901 (GuiContext should implement the equals() method) created by Nicklas Nordborg
It is hard to compare if two objects represents the same context otherwise.
12:52 PM Ticket #891 (Upgrade demo server to BASE 2.5) closed by Johan Enell
fixed
12:47 PM Changeset [4087] by Johan Enell
Tagging version 2.5.1
11:41 AM Changeset [4086] by Johan Enell
Preparing release 2.5.1

Jan 17, 2008:

12:08 PM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) closed by Nicklas Nordborg
fixed: (In [4085]) Fixes #899: Specify "source" and "target" options in …
12:08 PM Changeset [4085] by Nicklas Nordborg
Fixes #899: Specify "source" and "target" options in <javac> tasks in …
11:53 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) closed by Nicklas Nordborg
fixed: (In [4084]) Fixes #895: Add serialVersionUID to all classes that need …
11:53 AM Changeset [4084] by Nicklas Nordborg
Fixes #895: Add serialVersionUID to all classes that need it but …
11:51 AM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) updated by Nicklas Nordborg
Status, Owner changed
11:42 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) updated by Nicklas Nordborg
Owner, Status changed
11:08 AM Changeset [4083] by Nicklas Nordborg
References #894: Support for array designs with other feature …
11:08 AM Ticket #894 (Support for array designs with other feature identification methods ...) updated by Nicklas Nordborg
(In [4083]) References #894: Support for array designs with other …
9:42 AM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) created by Nicklas Nordborg
This should not be allowed and will lead to problems when analysing. I …
9:37 AM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) updated by Nicklas Nordborg
Type changed
9:37 AM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) created by Nicklas Nordborg
The "source" specifies the java version of the source files. The …
9:27 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) created by Nicklas Nordborg
It is better to have them as external projects. This will also give us …

Jan 16, 2008:

9:49 PM ReleaseProcedure edited by Jari Häkkinen
Added a note to upload the example code packages to download area. (diff)
9:43 PM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) closed by Jari Häkkinen
fixed
9:43 PM Ticket #897 (Potential temporary directory clash for plugins running through job agents) updated by Nicklas Nordborg
Possible workaround for this is to modify the jobagent.sh script …
9:42 PM DeveloperInformation edited by Jari Häkkinen
Fixes ticket::886 (diff)
9:26 PM Ticket #897 (Potential temporary directory clash for plugins running through job agents) created by Jari Häkkinen
With modern multi-core machines there will probably be a desire to run …
7:55 PM WikiStart edited by Jari Häkkinen
(diff)
12:13 PM Ticket #896 (Stop generating too long URL:s) updated by Nicklas Nordborg
Description changed
12:01 PM Ticket #896 (Stop generating too long URL:s) created by Nicklas Nordborg
If a list page is configured to display many columns (around 50+), you …

Jan 15, 2008:

3:38 PM Changeset [4082] by Nicklas Nordborg
Fixes #879: Add column holding the filename of last file used for …
3:38 PM Ticket #879 (Add column holding the filename of last file used for updating ...) closed by Nicklas Nordborg
fixed: (In [4082]) Fixes #879: Add column holding the filename of last file …
3:00 PM Changeset [4081] by Nicklas Nordborg
References #636: Kill a running job Updated UML diagram
3:00 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
(In [4081]) References #636: Kill a running job Updated UML diagram
2:58 PM Changeset [4080] by Nicklas Nordborg
References #894: Support for array designs with other feature …
2:58 PM Ticket #894 (Support for array designs with other feature identification methods ...) updated by Nicklas Nordborg
(In [4080]) References #894: Support for array designs with other …
11:47 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) created by Nicklas Nordborg
The serialVersionUID field is recommended for all Serializable …
7:54 AM Ticket #879 (Add column holding the filename of last file used for updating ...) reopened by Nicklas Nordborg
Column declaration doesn't set max string length. No 'public static …

Jan 14, 2008:

3:01 PM Ticket #894 (Support for array designs with other feature identification methods ...) updated by Nicklas Nordborg
Status, Owner changed
3:01 PM Ticket #867 (Support for array designs without coordinate/position information for ...) closed by Nicklas Nordborg
wontfix
3:00 PM Ticket #894 (Support for array designs with other feature identification methods ...) created by Nicklas Nordborg
This ticket replaces #867. It had a slightly different angle, and the …
1:52 PM Ticket #887 (Internal job queue may start the same job more than once if running ...) updated by Nicklas Nordborg
Milestone changed
1:51 PM Changeset [4079] by Nicklas Nordborg
Fixes #890: Ant target 'package.examples' fails when compiling webservices
1:51 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) closed by Nicklas Nordborg
fixed: (In [4079]) Fixes #890: Ant target 'package.examples' fails when …
12:49 PM Ticket #893 (Add support for setting a job's status to ABORTING) created by Nicklas Nordborg
Plug-ins that supports aborting may not always respond immediately. …
12:46 PM Ticket #892 (Abort long-running queries) created by Nicklas Nordborg
A problem that became visible when working with #636 (Kill a running …
12:21 PM Changeset [4078] by Nicklas Nordborg
References #636: Kill a running job * Signals are now working with …
12:21 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
(In [4078]) References #636: Kill a running job * Signals are now …

Jan 12, 2008:

1:13 AM Ticket #891 (Upgrade demo server to BASE 2.5) updated by Jari Häkkinen
Priority changed
Demo server is now upgraded to 2.5.0. We should close this milestone soon.
12:10 AM Changeset [4077] by Jari Häkkinen
Correcting typo.

Jan 11, 2008:

11:55 PM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) updated by Jari Häkkinen
Owner, Status changed
11:55 PM Ticket #891 (Upgrade demo server to BASE 2.5) updated by Jari Häkkinen
Owner, Status changed
Oups, I thought this was already done. It is a part of the release …
4:16 PM Ticket #879 (Add column holding the filename of last file used for updating ...) closed by Martin Svensson
fixed: (In [4076]) Fixes #879 Add column holding the filename of last file …
4:16 PM Changeset [4076] by Martin Svensson
Fixes #879 Add column holding the filename of last file used for …
2:27 PM Ticket #891 (Upgrade demo server to BASE 2.5) created by Nicklas Nordborg
And to 2.5.1 when it is released.
2:25 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) updated by Nicklas Nordborg
Summary, Description changed
2:24 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) created by Nicklas Nordborg
Compile BASE with: ant clean package.examples Part of the …

Jan 10, 2008:

4:44 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by Martin Svensson
(In [4075]) References #879 The database has now been updated, …
4:44 PM Changeset [4075] by Martin Svensson
References #879 The database has now been updated, including UML …

Jan 9, 2008:

10:11 PM Ticket #889 (Clicking "Help" throws a Python error) created by base
http://base2.thep.lu.se/demo/ BASE 2.5.0beta (build #3933; schema #45) …
9:30 AM Ticket #888 (Make dynamic table creation code more stable) created by Nicklas Nordborg
If the timing is unfortunate between two plug-in jobs, the may both …
9:14 AM Ticket #887 (Internal job queue may start the same job more than once if running ...) created by Nicklas Nordborg
There have been reports on the mailing list that although only a …

Jan 8, 2008:

1:06 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
(In [4074]) References #636: Kill a running job Infrastructure is now …
1:06 PM Changeset [4074] by Nicklas Nordborg
References #636: Kill a running job Infrastructure is now in place. …

Jan 2, 2008:

3:04 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by Martin Svensson
Status, Owner changed
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