Timeline
Jan 2, 2008:
- 3:04 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by
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Status, Owner changed
Dec 24, 2007:
- 10:39 PM ReleaseProcedure edited by
- updating link to svndigest (diff)
Dec 20, 2007:
- 2:47 PM Changeset [4073] by
- References #636: Kill a running job Infrastructure for signal …
- 2:47 PM Ticket #636 (Kill a running job) updated by
- (In [4073]) References #636: Kill a running job Infrastructure for …
Dec 19, 2007:
- 4:10 PM Changeset [4072] by
- Fixes #762 Provide operators 'In' and 'Not in' when filtering a list
- 4:10 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) closed by
- fixed: (In [4072]) Fixes #762 Provide operators 'In' and 'Not in' when …
- 2:58 PM Ticket #636 (Kill a running job) updated by
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Status, Milestone changed
I'll start with this now. We had some discussions around the coffe … - 2:02 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
- (In [4071]) References #762 The functionality is now completely …
- 2:02 PM Changeset [4071] by
- References #762 The functionality is now completely implemented. It …
- 1:52 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
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Status, Owner changed
- 9:42 AM Ticket #636 (Kill a running job) updated by
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Description changed
Dec 18, 2007:
- 11:31 AM Changeset [4070] by
- Fixes #790: Job slot status information on job agent view
- 11:31 AM Ticket #790 (Job slot status information on job agent view) closed by
- fixed: (In [4070]) Fixes #790: Job slot status information on job agent view
- 10:56 AM Ticket #790 (Job slot status information on job agent view) updated by
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Owner, Component, Priority, Status, Milestone changed
Dec 17, 2007:
- 11:11 AM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) created by
- The current links are pointing to a temporary location. The packages …
- 11:05 AM DeveloperInformation edited by
- Added links to packages with example code (diff)
- 9:05 AM Changeset [4069] by
- References #880: Corrected @since annotation (=2.6)
- 9:05 AM Ticket #880 (Exclude reporters in Lowess) updated by
- (In [4069]) References #880: Corrected @since annotation (=2.6)
- 9:02 AM Ticket #880 (Exclude reporters in Lowess) closed by
- fixed: (In [4068]) Fixes #880: Exclude reporters in Lowess
- 9:02 AM Changeset [4068] by
- Fixes #880: Exclude reporters in Lowess
- 7:47 AM Ticket #880 (Exclude reporters in Lowess) updated by
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Owner, Status changed
Dec 14, 2007:
- 4:48 PM Changeset [4067] by
- References #762 Updated PropertyFilter class to use the new operators.
- 4:48 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
- (In [4067]) References #762 Updated PropertyFilter class to use the …
- 4:05 PM Changeset [4066] by
- Fixes #885
- 4:05 PM Ticket #885 (Base1PluginExecuter has to short string input field) closed by
- fixed: (In [4066]) Fixes #885
- 3:44 PM Ticket #885 (Base1PluginExecuter has to short string input field) updated by
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Milestone, Status changed
- 3:44 PM Ticket #884 (Base1PluginExecuter has to short string input field) closed by
- duplicate: dupicate #885
- 3:37 PM Ticket #884 (Base1PluginExecuter has to short string input field) created by
- The string input field for jobparameters is set to default 255 but …
- 3:37 PM Ticket #885 (Base1PluginExecuter has to short string input field) created by
- The string input field for jobparameters is set to default 255 but …
- 2:50 PM Ticket #880 (Exclude reporters in Lowess) updated by
- In practical terms this means: * We need a boolean flag on the …
- 2:34 PM Changeset [4065] by
- Fixes #870 and #883: Overview plots and correction factor plots should …
- 2:34 PM Tickets #883,870 batch updated by
- fixed: (In [4065]) Fixes #870 and #883: Overview plots and correction factor …
- 2:33 PM Ticket #883 (Overview plots and correction factor plots should be loaded one by one) created by
- For background info, see #870: OutOfMemory when creating correction …
- 2:31 PM Changeset [4064] by
- Fixes #882: list_annotations.jsp has an extra </div> tag with no …
- 2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) closed by
- fixed: (In [4064]) Fixes #882: list_annotations.jsp has an extra </div> tag …
- 2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) created by
- 2:30 PM Changeset [4063] by
- Fixes #881: Page taglib with type="include" generates </html> tag
- 2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) closed by
- fixed: (In [4063]) Fixes #881: Page taglib with type="include" generates …
- 2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) updated by
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Owner, Summary, Status changed
- 2:26 PM Ticket #881 (Page taglib with type="include" generates </html> tag) created by
- It is used for page parts which are included inside other pages. Thus …
- 1:51 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
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Status changed
- 1:12 PM Ticket #880 (Exclude reporters in Lowess) created by
- New parameter in Lowess: exclude reporters The user chooses a …
- 12:19 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- It seems like browsers today have a rather high number for 'max …
- 12:12 PM Changeset [4062] by
- Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
- 12:12 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) closed by
- fixed: (In [4062]) Fixes #837: Lowess plugin. Error: Sum of weigths in …
- 12:09 PM Changeset [4061] by
- Fixes #838: Change default value of Blockgroup size to 0 in Lowess
- 12:09 PM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) closed by
- fixed: (In [4061]) Fixes #838: Change default value of Blockgroup size to 0 …
- 12:02 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by
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Description changed
- 12:00 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by
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Description changed
- 11:59 AM Ticket #879 (Add column holding the filename of last file used for updating ...) created by
- This is to simple let everyone know where the annotations are coming …
- 11:37 AM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) updated by
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Owner, Status changed
- 10:58 AM Changeset [4060] by
- Fixes #878: Exporting files as a compressed archive may throw an …
- 10:58 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) closed by
- fixed: (In [4060]) Fixes #878: Exporting files as a compressed archive may …
- 10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) updated by
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Status changed
- 10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) created by
- Here is the stacktrace: […] This happens because the path up to …
- 9:55 AM Changeset [4059] by
- Fixes #749: TAR files with long files names are not supported
- 9:55 AM Ticket #749 (TAR files with long files names are not supported) closed by
- fixed: (In [4059]) Fixes #749: TAR files with long files names are not supported
- 8:13 AM Ticket #749 (TAR files with long files names are not supported) updated by
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Owner, Status, Milestone changed
It seems like commons-compress is not making any progress at all. I'll …
Dec 13, 2007:
- 3:19 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
- (In [4058]) References #762 Added four new Operators and started to …
- 3:19 PM Changeset [4058] by
- References #762 Added four new Operators and started to implement them …
- 1:45 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by
- fixed: (In [4057]) Fixes #771: Make annotations for Bioassays available in …
- 1:45 PM Changeset [4057] by
- Fixes #771: Make annotations for Bioassays available in bioassay table …
- 11:38 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
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Status changed
- 11:38 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
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Status, Owner changed
- 11:28 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
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Priority, Milestone, Component changed
I'll fix this so that experimental factor annotations can be displayed …
Dec 12, 2007:
- 4:09 PM Ticket #875 (Create Illumina SNP raw data type) updated by
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Owner, Status changed
- 3:01 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by
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Priority changed
- 3:01 PM Ticket #875 (Create Illumina SNP raw data type) updated by
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Priority changed
- 3:00 PM Ticket #868 (Support for chips with multiple arrays) updated by
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Priority changed
- 3:00 PM Ticket #868 (Support for chips with multiple arrays) updated by
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Description, Priority, Summary changed
- 2:58 PM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by
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Priority changed
- 2:58 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) updated by
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Priority changed
- 2:57 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
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Priority changed
- 2:57 PM Ticket #639 (exportPureMatrix method) updated by
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Priority changed
- 2:54 PM Ticket #875 (Create Illumina SNP raw data type) updated by
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Summary changed
- 2:41 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by
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Description changed
- 2:40 PM Ticket #877 (Illumina SNP validator and meta-data extractor) created by
- The data files hsould be validated automagically and some data such as …
- 2:37 PM Ticket #875 (Create Illumina SNP raw data type) updated by
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Summary changed
- 2:36 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by
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Description changed
- 2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) updated by
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Description changed
- 2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) created by
- Illumina data is exported from the scanner or BeadStudio. The two …
- 2:29 PM Ticket #875 (Create Illumina SNP raw data type) created by
- Needed for SNP data from the Illumina platform. The raw files are to …
- 2:24 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) created by
- The plug-in needs a validator and meta-data extractor. Depends on …
- 2:22 PM Ticket #841 (Investigate BASE support for uploading files >2GB) updated by
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Milestone changed
- 2:21 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) updated by
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Milestone changed
A more informative printout is needed explaining why the normalization … - 2:14 PM Ticket #834 (Trashcan cannot be emptied) updated by
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Milestone changed
- 2:09 PM Ticket #639 (exportPureMatrix method) updated by
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Milestone changed
- 2:06 PM Ticket #791 (Plug-in execution time estimates) updated by
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Milestone changed
- 2:05 PM Ticket #790 (Job slot status information on job agent view) updated by
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Milestone changed
- 2:04 PM Ticket #742 (Refactor BioAssaySetExporter) updated by
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Milestone changed
- 2:04 PM Ticket #741 (Refactor Base1PluginExecuter) updated by
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Milestone changed
- 2:04 PM Ticket #738 (Implement file upload as a pure servlet) updated by
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Owner, Milestone, Status changed
- 2:03 PM Ticket #636 (Kill a running job) updated by
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Milestone changed
- 2:03 PM Ticket #621 (Write 'Plate' section) updated by
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Milestone changed
- 2:02 PM Ticket #617 (Write plate management in array LIMS) updated by
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Milestone changed
- 2:02 PM Ticket #597 (Read "Appendix: web.xml reference") updated by
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Milestone changed
- 2:02 PM Ticket #585 (Make the BASE file system pluggable) updated by
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Milestone changed
- 1:59 PM Ticket #436 (Create extension system for the web application) updated by
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Milestone changed
- 1:57 PM Ticket #866 (Performance testing creating root Bioassay set) closed by
- wontfix
- 9:35 AM Changeset [4056] by
- Fixes #873: AbstractFlatFileImporter should use number of parsed bytes …
- 9:35 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) closed by
- fixed: (In [4056]) Fixes #873: AbstractFlatFileImporter should use number of …
- 9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) updated by
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Summary changed
- 9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) updated by
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Owner, Status changed
- 9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) created by
- It currently uses the number of parsed characters, which may be …
- 9:20 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) closed by
- fixed: (In [4055]) Fixes #800: Make the Illumina importer accept tab as data …
- 9:20 AM Changeset [4055] by
- Fixes #800: Make the Illumina importer accept tab as data delimiter …
Dec 11, 2007:
- 1:27 PM Ticket #738 (Implement file upload as a pure servlet) updated by
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Status, Owner changed
- 11:51 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) closed by
- fixed: (In [4054]) Fixes #865 Progress reporter implementation should detect …
- 11:51 AM Changeset [4054] by
- Fixes #865 Progress reporter implementation should detect and handle …
- 11:37 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by
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Summary, Status, Owner, Milestone changed
Ok, I just got this confirmed by other users. They also report that … - 9:25 AM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by
- I have been thinking a bit about how to do this. Here is a first …
Dec 10, 2007:
- 3:50 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by
- Sorry I forgot about this post for some time. I was somewhat unclear …
- 3:44 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- There is no activity in the server. I'm the only one that is logged …
- 2:47 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- Hmm... afterwards there is still 300MB that is used by something else. …
- 2:14 PM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by
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Status, Owner changed
- 1:39 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- This is the memory load. When I try to load the about page during the …
- 11:56 AM Changeset [4053] by
- Fixes #872: Auto-compression based on file extension should not be …
- 11:56 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) closed by
- fixed: (In [4053]) Fixes #872: Auto-compression based on file extension …
- 11:43 AM Changeset [4052] by
- Fixes #871: 'Roles' test program should use *.tar.bz2 files instead of …
- 11:43 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) closed by
- fixed: (In [4052]) Fixes #871: 'Roles' test program should use *.tar.bz2 …
- 11:42 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) created by
- This depends on the database engine since the extension matching is …
- 11:36 AM Ticket #408 (Implement FTP server) updated by
- The Apache team is working on a new FTP server software. It seems …
- 11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) updated by
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Owner, Status changed
- 11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) created by
- The testdata for the 'roles' test program has used *.bz2 files. The …
- 10:01 AM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- Can't find any explicit calls to System.gc() from JFreeChart.
- 9:19 AM Ticket #870 (OutOfMemory when creating correction factor plot) updated by
- This can have other causes than actually being out of memory. The …
- 8:50 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by
- I want to add some more information about how I solved this bug. It …
- 8:22 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) closed by
- fixed: (In [4051]) Fixes #869: Upload + unpack of compressed file may corrupt data
- 8:22 AM Changeset [4051] by
- Fixes #869: Upload + unpack of compressed file may corrupt data
- 7:55 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by
- After tons of debug output I think I have narrowed it down to the …
Dec 7, 2007:
- 5:22 PM Ticket #870 (OutOfMemory when creating correction factor plot) created by
- I get an OutOfMemoryError when I try to create correction factor plot, …
- 2:09 PM Ticket #865 (Progress reporter implementation should detect and handle negative ...) updated by
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Status, Owner changed
- 1:57 PM Changeset [4050] by
- Fixes #864 Some core plug-ins report negative progress values in large …
- 1:57 PM Ticket #864 (Some core plug-ins report negative progress values in large experiments) closed by
- fixed: (In [4050]) Fixes #864 Some core plug-ins report negative progress …
- 11:26 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by
- An interesting note is that it seems to work if the compressed file is …
- 11:18 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by
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Status, Owner changed
- 11:18 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by
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Description changed
- 9:56 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) created by
- When uploading some compressed files and selecting to decompress them …
- 9:06 AM Ticket #868 (Support for chips with multiple arrays) created by
- Illumina array slides are special in that they contain multiple …
- 8:51 AM Ticket #867 (Support for array designs without coordinate/position information for ...) created by
- This ticket has been replaced by #894. The current way of using an …
- 8:46 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) updated by
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Status, Owner changed
- 8:29 AM Changeset [4049] by
- Changes for future release 2.6
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