Timeline



Dec 24, 2007:

10:39 PM ReleaseProcedure edited by Peter Johansson
updating link to svndigest (diff)

Dec 20, 2007:

2:47 PM Changeset [4073] by Nicklas Nordborg
References #636: Kill a running job Infrastructure for signal …

Dec 19, 2007:

4:10 PM Changeset [4072] by Martin Svensson
Fixes #762 Provide operators 'In' and 'Not in' when filtering a list
4:10 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) closed by Martin Svensson
fixed: (In [4072]) Fixes #762 Provide operators 'In' and 'Not in' when …
2:02 PM Changeset [4071] by Martin Svensson
References #762 The functionality is now completely implemented. It …

Dec 18, 2007:

11:31 AM Changeset [4070] by Nicklas Nordborg
Fixes #790: Job slot status information on job agent view
11:31 AM Ticket #790 (Job slot status information on job agent view) closed by Nicklas Nordborg
fixed: (In [4070]) Fixes #790: Job slot status information on job agent view

Dec 17, 2007:

11:11 AM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) created by Nicklas Nordborg
The current links are pointing to a temporary location. The packages …
11:05 AM DeveloperInformation edited by Nicklas Nordborg
Added links to packages with example code (diff)
9:05 AM Changeset [4069] by Nicklas Nordborg
References #880: Corrected @since annotation (=2.6)
9:02 AM Ticket #880 (Exclude reporters in Lowess) closed by Nicklas Nordborg
fixed: (In [4068]) Fixes #880: Exclude reporters in Lowess
9:02 AM Changeset [4068] by Nicklas Nordborg
Fixes #880: Exclude reporters in Lowess

Dec 14, 2007:

4:48 PM Changeset [4067] by Martin Svensson
References #762 Updated PropertyFilter? class to use the new operators.
4:05 PM Changeset [4066] by Johan Enell
Fixes #885
4:05 PM Ticket #885 (Base1PluginExecuter has to short string input field) closed by Johan Enell
fixed: (In [4066]) Fixes #885
3:44 PM Ticket #884 (Base1PluginExecuter has to short string input field) closed by Johan Enell
duplicate: dupicate #885
3:37 PM Ticket #884 (Base1PluginExecuter has to short string input field) created by Johan Enell
The string input field for jobparameters is set to default 255 but …
3:37 PM Ticket #885 (Base1PluginExecuter has to short string input field) created by Johan Enell
The string input field for jobparameters is set to default 255 but …
2:34 PM Changeset [4065] by Nicklas Nordborg
Fixes #870 and #883: Overview plots and correction factor plots should …
2:34 PM Tickets #883,​870 batch updated by Nicklas Nordborg
fixed: (In [4065]) Fixes #870 and #883: Overview plots and correction factor …
2:33 PM Ticket #883 (Overview plots and correction factor plots should be loaded one by one) created by Nicklas Nordborg
For background info, see #870: OutOfMemory? when creating correction …
2:31 PM Changeset [4064] by Nicklas Nordborg
Fixes #882: list_annotations.jsp has an extra </div> tag with no …
2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) closed by Nicklas Nordborg
fixed: (In [4064]) Fixes #882: list_annotations.jsp has an extra </div> tag …
2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) created by Nicklas Nordborg
2:30 PM Changeset [4063] by Nicklas Nordborg
Fixes #881: Page taglib with type="include" generates </html> tag
2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) closed by Nicklas Nordborg
fixed: (In [4063]) Fixes #881: Page taglib with type="include" generates …
2:26 PM Ticket #881 (Page taglib with type="include" generates </html> tag) created by Nicklas Nordborg
It is used for page parts which are included inside other pages. Thus …
1:12 PM Ticket #880 (Exclude reporters in Lowess) created by Johan Enell
New parameter in Lowess: exclude reporters The user chooses a …
12:12 PM Changeset [4062] by Nicklas Nordborg
Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
12:12 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) closed by Nicklas Nordborg
fixed: (In [4062]) Fixes #837: Lowess plugin. Error: Sum of weigths in …
12:09 PM Changeset [4061] by Nicklas Nordborg
Fixes #838: Change default value of Blockgroup size to 0 in Lowess
12:09 PM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) closed by Nicklas Nordborg
fixed: (In [4061]) Fixes #838: Change default value of Blockgroup size to 0 …
11:59 AM Ticket #879 (Add column holding the filename of last file used for updating ...) created by Nicklas Nordborg
This is to simple let everyone know where the annotations are coming …
10:58 AM Changeset [4060] by Nicklas Nordborg
Fixes #878: Exporting files as a compressed archive may throw an …
10:58 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) closed by Nicklas Nordborg
fixed: (In [4060]) Fixes #878: Exporting files as a compressed archive may …
10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) created by Nicklas Nordborg
Here is the stacktrace: […] This happens because the path up to …
9:55 AM Changeset [4059] by Nicklas Nordborg
Fixes #749: TAR files with long files names are not supported
9:55 AM Ticket #749 (TAR files with long files names are not supported) closed by Nicklas Nordborg
fixed: (In [4059]) Fixes #749: TAR files with long files names are not supported

Dec 13, 2007:

3:19 PM Changeset [4058] by Martin Svensson
References #762 Added four new Operators and started to implement them …
1:45 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by Nicklas Nordborg
fixed: (In [4057]) Fixes #771: Make annotations for Bioassays available in …
1:45 PM Changeset [4057] by Nicklas Nordborg
Fixes #771: Make annotations for Bioassays available in bioassay table …

Dec 12, 2007:

2:40 PM Ticket #877 (Illumina SNP validator and meta-data extractor) created by Johan Enell
The data files hsould be validated automagically and some data such as …
2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) created by Johan Enell
Illumina data is exported from the scanner or BeadStudio. The two …
2:29 PM Ticket #875 (Create Illumina SNP raw data type) created by Johan Enell
Needed for SNP data from the Illumina platform. The raw files are to …
2:24 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) created by Johan Enell
The plug-in needs a validator and meta-data extractor. Depends on …
1:57 PM Ticket #866 (Performance testing creating root Bioassay set) closed by Johan Enell
wontfix
9:35 AM Changeset [4056] by Nicklas Nordborg
Fixes #873: AbstractFlatFileImporter? should use number of parsed bytes …
9:35 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) closed by Nicklas Nordborg
fixed: (In [4056]) Fixes #873: AbstractFlatFileImporter? should use number of …
9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) created by Nicklas Nordborg
It currently uses the number of parsed characters, which may be …
9:20 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) closed by Nicklas Nordborg
fixed: (In [4055]) Fixes #800: Make the Illumina importer accept tab as data …
9:20 AM Changeset [4055] by Nicklas Nordborg
Fixes #800: Make the Illumina importer accept tab as data delimiter …

Dec 11, 2007:

11:51 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) closed by Martin Svensson
fixed: (In [4054]) Fixes #865 Progress reporter implementation should detect …
11:51 AM Changeset [4054] by Martin Svensson
Fixes #865 Progress reporter implementation should detect and handle …

Dec 10, 2007:

11:56 AM Changeset [4053] by Nicklas Nordborg
Fixes #872: Auto-compression based on file extension should not be …
11:56 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) closed by Nicklas Nordborg
fixed: (In [4053]) Fixes #872: Auto-compression based on file extension …
11:43 AM Changeset [4052] by Nicklas Nordborg
Fixes #871: 'Roles' test program should use *.tar.bz2 files instead of …
11:43 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) closed by Nicklas Nordborg
fixed: (In [4052]) Fixes #871: 'Roles' test program should use *.tar.bz2 …
11:42 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) created by Nicklas Nordborg
This depends on the database engine since the extension matching is …
11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) created by Nicklas Nordborg
The testdata for the 'roles' test program has used *.bz2 files. The …
8:22 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) closed by Nicklas Nordborg
fixed: (In [4051]) Fixes #869: Upload + unpack of compressed file may corrupt data
8:22 AM Changeset [4051] by Nicklas Nordborg
Fixes #869: Upload + unpack of compressed file may corrupt data

Dec 7, 2007:

5:22 PM Ticket #870 (OutOfMemory when creating correction factor plot) created by Johan Enell
I get an OutOfMemoryError? when I try to create correction factor plot, …
1:57 PM Changeset [4050] by Martin Svensson
Fixes #864 Some core plug-ins report negative progress values in large …
1:57 PM Ticket #864 (Some core plug-ins report negative progress values in large experiments) closed by Martin Svensson
fixed: (In [4050]) Fixes #864 Some core plug-ins report negative progress …
9:56 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) created by Nicklas Nordborg
When uploading some compressed files and selecting to decompress them …
9:06 AM Ticket #868 (Support for chips with multiple arrays) created by Nicklas Nordborg
Illumina array slides are special in that they contain multiple …
8:51 AM Ticket #867 (Support for array designs without coordinate/position information for ...) created by Nicklas Nordborg
This ticket has been replaced by #894. The current way of using an …
8:29 AM Changeset [4049] by Nicklas Nordborg
Changes for future release 2.6

Dec 6, 2007:

11:10 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
11:08 PM Milestone BASE 2.5 completed
Starting from this release, we will only support Java 6 (SDK 1.6), …
11:06 PM Changeset [4048] by Jari Häkkinen
Changes for future release 2.5.1.
11:01 PM Changeset [4047] by Jari Häkkinen
New stable minor version 2.5 branch.
11:00 PM DownloadPage edited by Jari Häkkinen
(diff)
10:51 PM DownloadPage edited by Jari Häkkinen
(diff)
10:50 PM DownloadPage edited by Jari Häkkinen
Releasing 2.5 (diff)
10:44 PM Changeset [4046] by Jari Häkkinen
Tagging version 2.5
10:42 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
4:20 PM Changeset [4045] by Jari Häkkinen
Preparing release 2.5
3:09 PM Changeset [4044] by Jari Häkkinen
Addresses #693. Removed references to plain matrix in GUI.
3:04 PM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) closed by Johan Enell
fixed
3:04 PM Features edited by Johan Enell
(diff)
3:00 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") closed by Jari Häkkinen
fixed: (In [4043]) Fixes #593.
3:00 PM Changeset [4043] by Jari Häkkinen
Fixes #593.
2:42 PM Features edited by Johan Enell
(diff)
2:42 PM Features edited by Johan Enell
(diff)
2:40 PM Features edited by Johan Enell
(diff)
2:39 PM Features edited by Johan Enell
(diff)
2:38 PM tmev.jpg attached to Features by Johan Enell
2:21 PM Features edited by Johan Enell
(diff)
2:07 PM Features edited by Johan Enell
(diff)
2:01 PM Features edited by Johan Enell
(diff)
2:00 PM experiment_overview_options.jpg attached to Features by Johan Enell
1:53 PM Features edited by Johan Enell
(diff)
1:53 PM Features edited by Johan Enell
(diff)
1:52 PM Features edited by Johan Enell
(diff)
1:50 PM Features edited by Johan Enell
(diff)
1:41 PM login_screen.jpg attached to Features by Johan Enell
12:55 PM Changeset [4042] by Nicklas Nordborg
Fixes problem with 'ant web.jsp' target if Tomcat 6 is used.
11:24 AM Ticket #866 (Performance testing creating root Bioassay set) created by Johan Vallon-Christersson
Time taken for creating root Bioassay set in highly variable when …
11:12 AM Changeset [4041] by Nicklas Nordborg
Fixes #863: Displayed rows in bioassay set table limited to 60 Was …
11:12 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) closed by Nicklas Nordborg
fixed: (In [4041]) Fixes #863: Displayed rows in bioassay set table limited …
10:41 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) created by Nicklas Nordborg
For a background see #864. Since external plug-ins are likely to have …
10:40 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) created by Nicklas Nordborg
In experiments where the number of spots is larger than ~20M, the …
10:32 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) created by Johan Vallon-Christersson
In an experiment the Bioassay sets table will only display 60 rows. …
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