Timeline



Jan 2, 2008:

3:04 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by Martin Svensson
Owner, Status changed

Dec 24, 2007:

10:39 PM ReleaseProcedure edited by Peter Johansson
updating link to svndigest (diff)

Dec 20, 2007:

2:47 PM Changeset [4073] by Nicklas Nordborg
References #636: Kill a running job Infrastructure for signal …
2:47 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
(In [4073]) References #636: Kill a running job Infrastructure for …

Dec 19, 2007:

4:10 PM Changeset [4072] by Martin Svensson
Fixes #762 Provide operators 'In' and 'Not in' when filtering a list
4:10 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) closed by Martin Svensson
fixed: (In [4072]) Fixes #762 Provide operators 'In' and 'Not in' when …
2:58 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
Status, Milestone changed
I'll start with this now. We had some discussions around the coffe …
2:02 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Martin Svensson
(In [4071]) References #762 The functionality is now completely …
2:02 PM Changeset [4071] by Martin Svensson
References #762 The functionality is now completely implemented. It …
1:52 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Martin Svensson
Status, Owner changed
9:42 AM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
Description changed

Dec 18, 2007:

11:31 AM Changeset [4070] by Nicklas Nordborg
Fixes #790: Job slot status information on job agent view
11:31 AM Ticket #790 (Job slot status information on job agent view) closed by Nicklas Nordborg
fixed: (In [4070]) Fixes #790: Job slot status information on job agent view
10:56 AM Ticket #790 (Job slot status information on job agent view) updated by Nicklas Nordborg
Priority, Status, Milestone, Owner, Component changed

Dec 17, 2007:

11:11 AM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) created by Nicklas Nordborg
The current links are pointing to a temporary location. The packages …
11:05 AM DeveloperInformation edited by Nicklas Nordborg
Added links to packages with example code (diff)
9:05 AM Changeset [4069] by Nicklas Nordborg
References #880: Corrected @since annotation (=2.6)
9:05 AM Ticket #880 (Exclude reporters in Lowess) updated by Nicklas Nordborg
(In [4069]) References #880: Corrected @since annotation (=2.6)
9:02 AM Ticket #880 (Exclude reporters in Lowess) closed by Nicklas Nordborg
fixed: (In [4068]) Fixes #880: Exclude reporters in Lowess
9:02 AM Changeset [4068] by Nicklas Nordborg
Fixes #880: Exclude reporters in Lowess
7:47 AM Ticket #880 (Exclude reporters in Lowess) updated by Nicklas Nordborg
Owner, Status changed

Dec 14, 2007:

4:48 PM Changeset [4067] by Martin Svensson
References #762 Updated PropertyFilter class to use the new operators.
4:48 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Martin Svensson
(In [4067]) References #762 Updated PropertyFilter class to use the …
4:05 PM Changeset [4066] by Johan Enell
Fixes #885
4:05 PM Ticket #885 (Base1PluginExecuter has to short string input field) closed by Johan Enell
fixed: (In [4066]) Fixes #885
3:44 PM Ticket #885 (Base1PluginExecuter has to short string input field) updated by Johan Enell
Milestone, Status changed
3:44 PM Ticket #884 (Base1PluginExecuter has to short string input field) closed by Johan Enell
duplicate: dupicate #885
3:37 PM Ticket #884 (Base1PluginExecuter has to short string input field) created by Johan Enell
The string input field for jobparameters is set to default 255 but …
3:37 PM Ticket #885 (Base1PluginExecuter has to short string input field) created by Johan Enell
The string input field for jobparameters is set to default 255 but …
2:50 PM Ticket #880 (Exclude reporters in Lowess) updated by Nicklas Nordborg
In practical terms this means: * We need a boolean flag on the …
2:34 PM Changeset [4065] by Nicklas Nordborg
Fixes #870 and #883: Overview plots and correction factor plots should …
2:34 PM Tickets #883,​870 batch updated by Nicklas Nordborg
fixed: (In [4065]) Fixes #870 and #883: Overview plots and correction factor …
2:33 PM Ticket #883 (Overview plots and correction factor plots should be loaded one by one) created by Nicklas Nordborg
For background info, see #870: OutOfMemory when creating correction …
2:31 PM Changeset [4064] by Nicklas Nordborg
Fixes #882: list_annotations.jsp has an extra </div> tag with no …
2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) closed by Nicklas Nordborg
fixed: (In [4064]) Fixes #882: list_annotations.jsp has an extra </div> tag …
2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) created by Nicklas Nordborg
2:30 PM Changeset [4063] by Nicklas Nordborg
Fixes #881: Page taglib with type="include" generates </html> tag
2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) closed by Nicklas Nordborg
fixed: (In [4063]) Fixes #881: Page taglib with type="include" generates …
2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) updated by Nicklas Nordborg
Summary, Status, Owner changed
2:26 PM Ticket #881 (Page taglib with type="include" generates </html> tag) created by Nicklas Nordborg
It is used for page parts which are included inside other pages. Thus …
1:51 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Nicklas Nordborg
Status changed
1:12 PM Ticket #880 (Exclude reporters in Lowess) created by Johan Enell
New parameter in Lowess: exclude reporters The user chooses a …
12:19 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Nicklas Nordborg
It seems like browsers today have a rather high number for 'max …
12:12 PM Changeset [4062] by Nicklas Nordborg
Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
12:12 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) closed by Nicklas Nordborg
fixed: (In [4062]) Fixes #837: Lowess plugin. Error: Sum of weigths in …
12:09 PM Changeset [4061] by Nicklas Nordborg
Fixes #838: Change default value of Blockgroup size to 0 in Lowess
12:09 PM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) closed by Nicklas Nordborg
fixed: (In [4061]) Fixes #838: Change default value of Blockgroup size to 0 …
12:02 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by Nicklas Nordborg
Description changed
12:00 PM Ticket #879 (Add column holding the filename of last file used for updating ...) updated by Nicklas Nordborg
Description changed
11:59 AM Ticket #879 (Add column holding the filename of last file used for updating ...) created by Nicklas Nordborg
This is to simple let everyone know where the annotations are coming …
11:37 AM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) updated by Nicklas Nordborg
Owner, Status changed
10:58 AM Changeset [4060] by Nicklas Nordborg
Fixes #878: Exporting files as a compressed archive may throw an …
10:58 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) closed by Nicklas Nordborg
fixed: (In [4060]) Fixes #878: Exporting files as a compressed archive may …
10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) updated by Nicklas Nordborg
Status changed
10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) created by Nicklas Nordborg
Here is the stacktrace: […] This happens because the path up to …
9:55 AM Changeset [4059] by Nicklas Nordborg
Fixes #749: TAR files with long files names are not supported
9:55 AM Ticket #749 (TAR files with long files names are not supported) closed by Nicklas Nordborg
fixed: (In [4059]) Fixes #749: TAR files with long files names are not supported
8:13 AM Ticket #749 (TAR files with long files names are not supported) updated by Nicklas Nordborg
Status, Owner, Milestone changed
It seems like commons-compress is not making any progress at all. I'll …

Dec 13, 2007:

3:19 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Martin Svensson
(In [4058]) References #762 Added four new Operators and started to …
3:19 PM Changeset [4058] by Martin Svensson
References #762 Added four new Operators and started to implement them …
1:45 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by Nicklas Nordborg
fixed: (In [4057]) Fixes #771: Make annotations for Bioassays available in …
1:45 PM Changeset [4057] by Nicklas Nordborg
Fixes #771: Make annotations for Bioassays available in bioassay table …
11:38 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Nicklas Nordborg
Status changed
11:38 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Nicklas Nordborg
Status, Owner changed
11:28 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Nicklas Nordborg
Priority, Component, Milestone changed
I'll fix this so that experimental factor annotations can be displayed …

Dec 12, 2007:

4:09 PM Ticket #875 (Create Illumina SNP raw data type) updated by Martin Svensson
Owner, Status changed
3:01 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by Nicklas Nordborg
Priority changed
3:01 PM Ticket #875 (Create Illumina SNP raw data type) updated by Nicklas Nordborg
Priority changed
3:00 PM Ticket #868 (Support for chips with multiple arrays) updated by Nicklas Nordborg
Priority changed
3:00 PM Ticket #868 (Support for chips with multiple arrays) updated by Nicklas Nordborg
Priority, Description, Summary changed
2:58 PM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by Nicklas Nordborg
Priority changed
2:58 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) updated by Nicklas Nordborg
Priority changed
2:57 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Nicklas Nordborg
Priority changed
2:57 PM Ticket #639 (exportPureMatrix method) updated by Nicklas Nordborg
Priority changed
2:54 PM Ticket #875 (Create Illumina SNP raw data type) updated by Nicklas Nordborg
Summary changed
2:41 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by Johan Enell
Description changed
2:40 PM Ticket #877 (Illumina SNP validator and meta-data extractor) created by Johan Enell
The data files hsould be validated automagically and some data such as …
2:37 PM Ticket #875 (Create Illumina SNP raw data type) updated by Johan Enell
Summary changed
2:36 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) updated by Johan Enell
Description changed
2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) updated by Johan Enell
Description changed
2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) created by Johan Enell
Illumina data is exported from the scanner or BeadStudio. The two …
2:29 PM Ticket #875 (Create Illumina SNP raw data type) created by Johan Enell
Needed for SNP data from the Illumina platform. The raw files are to …
2:24 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) created by Johan Enell
The plug-in needs a validator and meta-data extractor. Depends on …
2:22 PM Ticket #841 (Investigate BASE support for uploading files >2GB) updated by Johan Enell
Milestone changed
2:21 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) updated by Johan Enell
Milestone changed
A more informative printout is needed explaining why the normalization …
2:14 PM Ticket #834 (Trashcan cannot be emptied) updated by Johan Enell
Milestone changed
2:09 PM Ticket #639 (exportPureMatrix method) updated by Johan Enell
Milestone changed
2:06 PM Ticket #791 (Plug-in execution time estimates) updated by Johan Enell
Milestone changed
2:05 PM Ticket #790 (Job slot status information on job agent view) updated by Johan Enell
Milestone changed
2:04 PM Ticket #742 (Refactor BioAssaySetExporter) updated by Johan Enell
Milestone changed
2:04 PM Ticket #741 (Refactor Base1PluginExecuter) updated by Johan Enell
Milestone changed
2:04 PM Ticket #738 (Implement file upload as a pure servlet) updated by Johan Enell
Status, Owner, Milestone changed
2:03 PM Ticket #636 (Kill a running job) updated by Johan Enell
Milestone changed
2:03 PM Ticket #621 (Write 'Plate' section) updated by Johan Enell
Milestone changed
2:02 PM Ticket #617 (Write plate management in array LIMS) updated by Johan Enell
Milestone changed
2:02 PM Ticket #597 (Read "Appendix: web.xml reference") updated by Johan Enell
Milestone changed
2:02 PM Ticket #585 (Make the BASE file system pluggable) updated by Johan Enell
Milestone changed
1:59 PM Ticket #436 (Create extension system for the web application) updated by Johan Enell
Milestone changed
1:57 PM Ticket #866 (Performance testing creating root Bioassay set) closed by Johan Enell
wontfix
9:35 AM Changeset [4056] by Nicklas Nordborg
Fixes #873: AbstractFlatFileImporter should use number of parsed bytes …
9:35 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) closed by Nicklas Nordborg
fixed: (In [4056]) Fixes #873: AbstractFlatFileImporter should use number of …
9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) updated by Nicklas Nordborg
Summary changed
9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) updated by Nicklas Nordborg
Status, Owner changed
9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) created by Nicklas Nordborg
It currently uses the number of parsed characters, which may be …
9:20 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) closed by Nicklas Nordborg
fixed: (In [4055]) Fixes #800: Make the Illumina importer accept tab as data …
9:20 AM Changeset [4055] by Nicklas Nordborg
Fixes #800: Make the Illumina importer accept tab as data delimiter …

Dec 11, 2007:

1:27 PM Ticket #738 (Implement file upload as a pure servlet) updated by Martin Svensson
Owner, Status changed
11:51 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) closed by Martin Svensson
fixed: (In [4054]) Fixes #865 Progress reporter implementation should detect …
11:51 AM Changeset [4054] by Martin Svensson
Fixes #865 Progress reporter implementation should detect and handle …
11:37 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by Nicklas Nordborg
Status, Milestone, Summary, Owner changed
Ok, I just got this confirmed by other users. They also report that …
9:25 AM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by Nicklas Nordborg
I have been thinking a bit about how to do this. Here is a first …

Dec 10, 2007:

3:50 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by base
Sorry I forgot about this post for some time. I was somewhat unclear …
3:44 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Johan Enell
There is no activity in the server. I'm the only one that is logged …
2:47 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Nicklas Nordborg
Hmm... afterwards there is still 300MB that is used by something else. …
2:14 PM Ticket #867 (Support for array designs without coordinate/position information for ...) updated by Nicklas Nordborg
Owner, Status changed
1:39 PM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Johan Enell
This is the memory load. When I try to load the about page during the …
11:56 AM Changeset [4053] by Nicklas Nordborg
Fixes #872: Auto-compression based on file extension should not be …
11:56 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) closed by Nicklas Nordborg
fixed: (In [4053]) Fixes #872: Auto-compression based on file extension …
11:43 AM Changeset [4052] by Nicklas Nordborg
Fixes #871: 'Roles' test program should use *.tar.bz2 files instead of …
11:43 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) closed by Nicklas Nordborg
fixed: (In [4052]) Fixes #871: 'Roles' test program should use *.tar.bz2 …
11:42 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) created by Nicklas Nordborg
This depends on the database engine since the extension matching is …
11:36 AM Ticket #408 (Implement FTP server) updated by Nicklas Nordborg
The Apache team is working on a new FTP server software. It seems …
11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) updated by Nicklas Nordborg
Status, Owner changed
11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) created by Nicklas Nordborg
The testdata for the 'roles' test program has used *.bz2 files. The …
10:01 AM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Nicklas Nordborg
Can't find any explicit calls to System.gc() from JFreeChart.
9:19 AM Ticket #870 (OutOfMemory when creating correction factor plot) updated by Nicklas Nordborg
This can have other causes than actually being out of memory. The …
8:50 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by Nicklas Nordborg
I want to add some more information about how I solved this bug. It …
8:22 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) closed by Nicklas Nordborg
fixed: (In [4051]) Fixes #869: Upload + unpack of compressed file may corrupt data
8:22 AM Changeset [4051] by Nicklas Nordborg
Fixes #869: Upload + unpack of compressed file may corrupt data
7:55 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by Nicklas Nordborg
After tons of debug output I think I have narrowed it down to the …

Dec 7, 2007:

5:23 PM OutOfMemory.png attached to Ticket #870 by Johan Enell
5:22 PM Ticket #870 (OutOfMemory when creating correction factor plot) created by Johan Enell
I get an OutOfMemoryError when I try to create correction factor plot, …
2:09 PM Ticket #865 (Progress reporter implementation should detect and handle negative ...) updated by Martin Svensson
Owner, Status changed
1:57 PM Changeset [4050] by Martin Svensson
Fixes #864 Some core plug-ins report negative progress values in large …
1:57 PM Ticket #864 (Some core plug-ins report negative progress values in large experiments) closed by Martin Svensson
fixed: (In [4050]) Fixes #864 Some core plug-ins report negative progress …
11:26 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by Nicklas Nordborg
An interesting note is that it seems to work if the compressed file is …
11:18 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by Nicklas Nordborg
Owner, Status changed
11:18 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) updated by Nicklas Nordborg
Description changed
9:56 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) created by Nicklas Nordborg
When uploading some compressed files and selecting to decompress them …
9:06 AM Ticket #868 (Support for chips with multiple arrays) created by Nicklas Nordborg
Illumina array slides are special in that they contain multiple …
8:51 AM Ticket #867 (Support for array designs without coordinate/position information for ...) created by Nicklas Nordborg
This ticket has been replaced by #894. The current way of using an …
8:46 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) updated by Martin Svensson
Status, Owner changed
8:29 AM Changeset [4049] by Nicklas Nordborg
Changes for future release 2.6

Dec 6, 2007:

11:10 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
11:08 PM Milestone BASE 2.5 completed
Starting from this release, we will only support Java 6 (SDK 1.6), …
11:06 PM Changeset [4048] by Jari Häkkinen
Changes for future release 2.5.1.
11:01 PM Changeset [4047] by Jari Häkkinen
New stable minor version 2.5 branch.
11:00 PM DownloadPage edited by Jari Häkkinen
(diff)
10:51 PM DownloadPage edited by Jari Häkkinen
(diff)
10:50 PM DownloadPage edited by Jari Häkkinen
Releasing 2.5 (diff)
10:44 PM Changeset [4046] by Jari Häkkinen
Tagging version 2.5
10:42 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
4:20 PM Changeset [4045] by Jari Häkkinen
Preparing release 2.5
4:15 PM Ticket #617 (Write plate management in array LIMS) updated by Jari Häkkinen
Summary, Milestone changed
4:15 PM Ticket #727 (Add presentations and publications to the wiki) updated by Jari Häkkinen
Milestone changed
3:09 PM Changeset [4044] by Jari Häkkinen
Addresses #693. Removed references to plain matrix in GUI.
3:09 PM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) updated by Jari Häkkinen
(In [4044]) Addresses #693. Removed references to plain matrix in GUI.
3:04 PM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) closed by Johan Enell
fixed
3:04 PM Features edited by Johan Enell
(diff)
3:02 PM Ticket #639 (exportPureMatrix method) updated by Jari Häkkinen
Owner, Milestone, Status changed
3:00 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") closed by Jari Häkkinen
fixed: (In [4043]) Fixes #593.
3:00 PM Changeset [4043] by Jari Häkkinen
Fixes #593.
2:42 PM Features edited by Johan Enell
(diff)
2:42 PM Features edited by Johan Enell
(diff)
2:40 PM Features edited by Johan Enell
(diff)
2:39 PM Features edited by Johan Enell
(diff)
2:38 PM tmev.jpg attached to Features by Johan Enell
2:21 PM Features edited by Johan Enell
(diff)
2:07 PM Features edited by Johan Enell
(diff)
2:01 PM Features edited by Johan Enell
(diff)
2:00 PM experiment_overview_options.jpg attached to Features by Johan Enell
1:53 PM Features edited by Johan Enell
(diff)
1:53 PM Features edited by Johan Enell
(diff)
1:52 PM Features edited by Johan Enell
(diff)
1:50 PM Features edited by Johan Enell
(diff)
1:41 PM login_screen.jpg attached to Features by Johan Enell
1:36 PM Ticket #749 (TAR files with long files names are not supported) updated by Nicklas Nordborg
A compiled JAR with the commons compress code can be found at: …
12:55 PM Changeset [4042] by Nicklas Nordborg
Fixes problem with 'ant web.jsp' target if Tomcat 6 is used.
11:24 AM BASE2onk2.5.0b_rootPerAssay.pdf attached to Ticket #866 by Johan Vallon-Christersson
11:24 AM Ticket #866 (Performance testing creating root Bioassay set) created by Johan Vallon-Christersson
Time taken for creating root Bioassay set in highly variable when …
11:12 AM Changeset [4041] by Nicklas Nordborg
Fixes #863: Displayed rows in bioassay set table limited to 60 Was …
11:12 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) closed by Nicklas Nordborg
fixed: (In [4041]) Fixes #863: Displayed rows in bioassay set table limited …
10:41 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) created by Nicklas Nordborg
For a background see #864. Since external plug-ins are likely to have …
10:40 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) updated by Nicklas Nordborg
Description changed
10:40 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) created by Nicklas Nordborg
In experiments where the number of spots is larger than ~20M, the …
10:35 AM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) updated by Johan Enell
Status changed
10:32 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) created by Johan Vallon-Christersson
In an experiment the Bioassay sets table will only display 60 rows. …

Dec 5, 2007:

4:49 PM Ticket #847 (Update javadoc) closed by Martin Svensson
fixed: (In [4040]) Fixes #847 Most of the missing javadocs tags have been …
4:49 PM Changeset [4040] by Martin Svensson
Fixes #847 Most of the missing javadocs tags have been added in the …
3:39 PM Changeset [4039] by Nicklas Nordborg
References #850: SQL for checking schema version in BASE 1 should be …
3:39 PM Ticket #850 (SQL for checking schema version in BASE 1 should be externalized) updated by Nicklas Nordborg
(In [4039]) References #850: SQL for checking schema version in BASE 1 …
3:38 PM Ticket #862 (Web services server doesn't return exceptions from methods marked as 'void') closed by Nicklas Nordborg
fixed: (In [4038]) Fixes #862: Web services server doesn't return exceptions …
3:38 PM Changeset [4038] by Nicklas Nordborg
Fixes #862: Web services server doesn't return exceptions from methods …
2:43 PM Ticket #862 (Web services server doesn't return exceptions from methods marked as 'void') updated by Nicklas Nordborg
Status, Owner changed
It also seems to work if, for example, a throws BaseException is …
2:16 PM Changeset [4037] by Johan Enell
Fixes #861
2:16 PM Ticket #861 (Base1PluginExecuter doesn't return error stream) closed by Johan Enell
fixed: (In [4037]) Fixes #861
2:08 PM Ticket #862 (Web services server doesn't return exceptions from methods marked as 'void') created by Nicklas Nordborg
For example, trying to use the SessionService.login() method with an …
1:58 PM Ticket #861 (Base1PluginExecuter doesn't return error stream) updated by Johan Enell
Status changed
1:58 PM Ticket #861 (Base1PluginExecuter doesn't return error stream) created by Johan Enell
When Base1Executer exits with status done the error strem is …
11:31 AM Ticket #294 (Performance testing: Plugin-in execution time) closed by Nicklas Nordborg
fixed
11:26 AM Ticket #725 (Transfer all old documentation to the new wiki system.) updated by Jari Häkkinen
Owner, Status, Milestone changed
11:23 AM Ticket #721 (Store data in files instead of in the database) closed by Nicklas Nordborg
fixed
9:39 AM Changeset [4036] by Nicklas Nordborg
Fixes #851: Migration doesn't transfer 'reportermap' wizzzard …
9:39 AM Ticket #851 (Migration doesn't transfer 'reportermap' wizzzard configurations) closed by Nicklas Nordborg
fixed: (In [4036]) Fixes #851: Migration doesn't transfer 'reportermap' …
9:13 AM Ticket #860 (Migration should create File entries even if physical file doesn't ...) closed by Nicklas Nordborg
fixed: (In [4035]) Fixes #860: Migration should create File entries even if …
9:13 AM Changeset [4035] by Nicklas Nordborg
Fixes #860: Migration should create File entries even if physical file …
9:02 AM Ticket #851 (Migration doesn't transfer 'reportermap' wizzzard configurations) updated by Nicklas Nordborg
There is also a problem with complex column mappings. BASE 2 no longer …
8:49 AM Ticket #860 (Migration should create File entries even if physical file doesn't ...) updated by Nicklas Nordborg
Status changed
8:49 AM Ticket #860 (Migration should create File entries even if physical file doesn't ...) created by Nicklas Nordborg
If the physical file doesn't exists on the BASE 1 server nothing is …
8:21 AM Ticket #847 (Update javadoc) updated by Martin Svensson
(In [4034]) References #847 Updated some javadocs. Added some missing tags.
8:21 AM Changeset [4034] by Martin Svensson
References #847 Updated some javadocs. Added some missing tags.

Dec 4, 2007:

4:45 PM Ticket #859 (Downloading file from web services fails if the filename in BASE ...) closed by Martin Svensson
fixed: (In [4033]) Fixes #859 Downloading file from web services fails if the …
4:45 PM Changeset [4033] by Martin Svensson
Fixes #859 Downloading file from web services fails if the filename in …
4:12 PM Ticket #859 (Downloading file from web services fails if the filename in BASE ...) updated by Martin Svensson
Description, Status changed
4:10 PM Ticket #859 (Downloading file from web services fails if the filename in BASE ...) created by Martin Svensson
This is probably because the file name is used as an element name in …
1:16 PM Changeset [4032] by Nicklas Nordborg
Fixes #850: SQL for checking schema version in BASE 1 should be …
1:16 PM Ticket #850 (SQL for checking schema version in BASE 1 should be externalized) closed by Nicklas Nordborg
fixed: (In [4032]) Fixes #850: SQL for checking schema version in BASE 1 …
1:10 PM Changeset [4031] by Nicklas Nordborg
Removed debug output.
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