Timeline



Nov 16, 2007:

2:41 PM Changeset [3978] by Martin Svensson
References #827 Created ReporterService? and a method to get the …
11:59 AM Changeset [3977] by Nicklas Nordborg
References #827: Add more web services methods Added …
11:42 AM Changeset [3976] by Martin Svensson
References #827 Added ExperimentService?.getReporterLists().
11:25 AM Ticket #828 (Raw data importer should be able to set annotations on the imported ...) created by Nicklas Nordborg
When importing raw data with the RawDataFileFileImporter? it would be …
9:42 AM Changeset [3975] by Nicklas Nordborg
References #827. Updated javadoc related to last check-in
9:28 AM Changeset [3974] by Nicklas Nordborg
References #827: Add more web services methods Added Transferable and …
8:47 AM Changeset [3973] by Nicklas Nordborg
References #827: Add more web services methods * Added services to …

Nov 15, 2007:

1:37 PM Ticket #827 (Add more web services methods) created by Nicklas Nordborg
Some minor additions to make existing services more complete * …
12:49 PM Changeset [3972] by Nicklas Nordborg
References #492: Web services Added ServicesUtil?.listToInfo() method …
10:04 AM Ticket #825 (Fix bad documentation screenshots) closed by Martin Svensson
fixed: (In [3971]) Fixes #825 The screenshots have been replaced.
10:04 AM Changeset [3971] by Martin Svensson
Fixes #825 The screenshots have been replaced.
9:14 AM Changeset [3970] by Nicklas Nordborg
Fixes #826: CEL file validator doesn't work for binary XDA type files
9:14 AM Ticket #826 (CEL file validator doesn't work for binary XDA type files) closed by Nicklas Nordborg
fixed: (In [3970]) Fixes #826: CEL file validator doesn't work for binary XDA …

Nov 14, 2007:

8:23 PM Ticket #826 (CEL file validator doesn't work for binary XDA type files) created by Nicklas Nordborg
It does work for text format and binary Calvin format. The validation …
2:17 PM Ticket #809 (Read Web services documentation) closed by Nicklas Nordborg
fixed: (In [3969]) Fixes #809: Read Web services documentation
2:17 PM Changeset [3969] by Nicklas Nordborg
Fixes #809: Read Web services documentation
2:11 PM Ticket #825 (Fix bad documentation screenshots) created by Nicklas Nordborg
Some of the screenshots in the docbook documentation look very …
2:04 PM Ticket #824 (Update appendix: Menuguide) closed by Martin Svensson
fixed: (In [3968]) Fixes #824 appendix is now updated
2:04 PM Changeset [3968] by Martin Svensson
Fixes #824 appendix is now updated
1:42 PM Changeset [3967] by Nicklas Nordborg
References #492: Web services axis2.xml is now installed in the …
1:39 PM Ticket #824 (Update appendix: Menuguide) created by Martin Svensson
New menu choices have been added to the webclient and need to be …
12:45 PM Ticket #823 (Refactor classes in net.sf.basedb.ws.info.*) closed by Martin Svensson
fixed
12:04 PM Changeset [3966] by Martin Svensson
Fixes #666 Picture added
12:04 PM Ticket #666 (Image in chapter 6.2.3) closed by Martin Svensson
fixed: (In [3966]) Fixes #666 Picture added
11:04 AM Changeset [3965] by Martin Svensson
Fixed classpath for programs in /bin
9:45 AM Changeset [3964] by Nicklas Nordborg
References #492: Web services Redesigned file download to work with …
9:40 AM Changeset [3963] by Nicklas Nordborg
References #821: Split up core.aar Only create regenerate WSDL files …
9:22 AM Changeset [3962] by Nicklas Nordborg
References #821: Split up core.aar Fixed classpath for test programs.

Nov 13, 2007:

8:25 PM Ticket #822 (Create a separate WS-client dist) closed by Nicklas Nordborg
fixed: (In [3961]) Fixes #822.
8:25 PM Changeset [3961] by Nicklas Nordborg
Fixes #822.
8:25 PM Changeset [3960] by Nicklas Nordborg
References #807 Added documentation for plug-in developers.
4:30 PM Changeset [3959] by Martin Svensson
References #823 Added a serialVersionUID to the info classes that …
2:59 PM Changeset [3958] by Nicklas Nordborg
References #822: Create a separate WS-client dist Added some more …
2:31 PM Changeset [3957] by Martin Svensson
References #823 Info classes implement Serializable-interface. Added …
2:04 PM Changeset [3956] by Martin Svensson
References #823 The *Info classes are now refactored. The property of …
1:59 PM Changeset [3955] by Nicklas Nordborg
Renamed config to META-INF
1:37 PM Changeset [3954] by Nicklas Nordborg
References #822: Create a separate WS-client dist
1:36 PM Changeset [3953] by Nicklas Nordborg
8:49 AM Ticket #821 (Split up core.aar) closed by Nicklas Nordborg
fixed: (In [3952]) Fixes #821: Split up core.aar
8:49 AM Changeset [3952] by Nicklas Nordborg
Fixes #821: Split up core.aar

Nov 12, 2007:

3:15 PM Changeset [3951] by Nicklas Nordborg
References #821 and #823. Moved around info.* stuff to prepare for …
3:13 PM Changeset [3950] by Martin Svensson
Fixes #668. Not all icons were put inside (), only those which are in …
3:13 PM Ticket #668 (Displaying icons in the text) closed by Martin Svensson
fixed: (In [3950]) Fixes #668. Not all icons were put inside (), only those …
2:31 PM Ticket #823 (Refactor classes in net.sf.basedb.ws.info.*) created by Martin Svensson
The info classes used in the web services need to be refactored. They …
2:23 PM Changeset [3949] by Nicklas Nordborg
Fixes #820
2:23 PM Ticket #820 (Trying to delete a plugin that has been used by a job results in ...) closed by Nicklas Nordborg
fixed: (In [3949]) Fixes #820
2:18 PM Ticket #822 (Create a separate WS-client dist) created by Martin Svensson
A WS client dist with the following structure: /lib -> …
2:09 PM Ticket #821 (Split up core.aar) created by Martin Svensson
As it is now everything in WS are put in one aar-file when building …
2:04 PM Ticket #492 (Web services) closed by Martin Svensson
fixed: The items in this ticket are done, further development in Base web …
12:55 PM Ticket #820 (Trying to delete a plugin that has been used by a job results in ...) created by Nicklas Nordborg
Pb on the trashcan when attempting to remove a plugin definition and …
11:50 AM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) closed by Nicklas Nordborg
fixed: All diagrams from the data-layer are now transfered. Core-layer …
11:36 AM Changeset [3948] by Nicklas Nordborg
References #746. * Fixes links going from javadoc to docbook. * …
11:33 AM Changeset [3947] by Nicklas Nordborg
Fixes #819: Last file that needed links to javadoc.
11:33 AM Ticket #819 (Link classnames in docbook to their javadoc) closed by Nicklas Nordborg
fixed: (In [3947]) Fixes #819: Last file that needed links to javadoc.
9:37 AM Changeset [3946] by Martin Svensson
References #819 Described how to use the new attribute with classname …
9:08 AM Changeset [3945] by Nicklas Nordborg
References #819: Links to javadoc can now work from any subdirectory level.

Nov 9, 2007:

4:31 PM Changeset [3944] by Martin Svensson
References #819 The class-tag and interface-tag are now linking to the …
3:00 PM Changeset [3943] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
9:07 AM Ticket #819 (Link classnames in docbook to their javadoc) created by Martin Svensson
The 'classname' tag in docbook should link the class to the it's …

Nov 8, 2007:

3:33 PM Changeset [3942] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
2:13 PM Changeset [3941] by Martin Svensson
Correct warnings in Javadoc
1:05 PM Changeset [3940] by Martin Svensson
Fixes #807 Documentation has been read and some minor changes have …
1:05 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) closed by Martin Svensson
fixed: (In [3940]) Fixes #807 Documentation has been read and some minor …
12:08 PM Changeset [3939] by Nicklas Nordborg
References #492: Web services * Try to delete temp files generated …
9:23 AM Changeset [3938] by Nicklas Nordborg
Fixes #818: JarClassLoader? doesn't load classes correctly
9:23 AM Ticket #818 (JarClassLoader doesn't load classes correctly) closed by Nicklas Nordborg
fixed: (In [3938]) Fixes #818: JarClassLoader? doesn't load classes correctly
9:00 AM Ticket #818 (JarClassLoader doesn't load classes correctly) created by Nicklas Nordborg
Classes that are larger than a specific number of bytes are not loaded …
8:25 AM Changeset [3937] by Nicklas Nordborg
References #492: Web services * Fixed warning message about log4j …
7:54 AM Changeset [3936] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?

Nov 7, 2007:

7:22 PM DownloadPage edited by Jari Häkkinen
Updating revision number for BASE 2.5.0beta release. (diff)
7:16 PM Changeset [3935] by Jari Häkkinen
Tagging release 2.5.0beta
7:16 PM Changeset [3934] by Jari Häkkinen
Removing, problems uppgrading from 2.4 database schema to the latest …
6:01 PM Changeset [3933] by Nicklas Nordborg
Fixes #655
6:01 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by Nicklas Nordborg
fixed: (In [3933]) Fixes #655
5:33 PM Ticket #779 (Improve validation of job parameters in Base1PluginExecuter) closed by Johan Enell
fixed
5:32 PM Changeset [3932] by Johan Enell
Fixes #817
5:32 PM Ticket #817 (Hide deleted job parameters in Base1PluginExecuter) closed by Johan Enell
fixed: (In [3932]) Fixes #817
5:27 PM Ticket #816 (Duplicate parameter) closed by Johan Enell
invalid
5:27 PM Ticket #816 (Duplicate parameter) reopened by Johan Enell
This is changed. Duplicates are allowed. It is up to the plugin …
5:18 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by Nicklas Nordborg
There is still a problem with this. Users that installed the first …
4:52 PM Ticket #817 (Hide deleted job parameters in Base1PluginExecuter) created by Johan Enell
Job parameters that are marked as deleted should be hidden from the …
4:38 PM Changeset [3931] by Johan Enell
had some trouble with the default value of the annotation parameter
4:23 PM DownloadPage edited by Jari Häkkinen
Releasing 2.5.0beta (diff)
4:08 PM Changeset [3930] by Jari Häkkinen
Tagging release 2.5.0beta
4:07 PM Changeset [3929] by Jari Häkkinen
Fixed typo.
3:10 PM Changeset [3928] by Jari Häkkinen
Removing, problems compiling with Java 1.5
3:05 PM Changeset [3927] by Nicklas Nordborg
Fixes issue with compiling under Java 1.5
2:41 PM Changeset [3926] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
1:49 PM Changeset [3925] by Jari Häkkinen
Tagging release 2.5.0beta
1:47 PM Changeset [3924] by Jari Häkkinen
Preparing release of 2.5.0beta.
1:28 PM Changeset [3923] by Johan Enell
Fixes #816
1:28 PM Ticket #816 (Duplicate parameter) closed by Johan Enell
fixed: (In [3923]) Fixes #816
1:21 PM Changeset [3922] by Martin Svensson
set svn to ignore the wsdl folder in base/misc/
1:10 PM Changeset [3921] by Martin Svensson
References #809 ready to be read
12:43 PM Changeset [3920] by Martin Svensson
References #492 Creates a new OutputStream? for each upload and always …
11:04 AM Ticket #816 (Duplicate parameter) created by Johan Enell
The Base1PluginExecuter must check it there is duplicate parameters in …

Nov 6, 2007:

4:49 PM Changeset [3919] by Martin Svensson
References #492 Modified the download methods to eliminate the …
2:54 PM Changeset [3918] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
2:43 PM Changeset [3917] by Nicklas Nordborg
Fixes #717: Make initdb, updatedb and other scripts accept a username
2:43 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) closed by Nicklas Nordborg
fixed: (In [3917]) Fixes #717: Make initdb, updatedb and other scripts accept …
1:03 PM Changeset [3916] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
11:56 AM Changeset [3915] by Johan Enell
Fixes #795
11:56 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) closed by Johan Enell
fixed: (In [3915]) Fixes #795
10:51 AM Changeset [3914] by Martin Svensson
References #809 Documentation updated
10:42 AM Changeset [3913] by Nicklas Nordborg
Fixes #778: Add expression to formula
10:42 AM Ticket #778 (Add expression to formula) closed by Nicklas Nordborg
fixed: (In [3913]) Fixes #778: Add expression to formula
9:44 AM Changeset [3912] by Nicklas Nordborg
References #721. Fixes NPE in autodetect file format function when …
9:42 AM Changeset [3911] by Nicklas Nordborg
Fixes #811: Wildcard or regular expressions in raw data column …
9:42 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) closed by Nicklas Nordborg
fixed: (In [3911]) Fixes #811: Wildcard or regular expressions in raw data …
8:59 AM Changeset [3910] by Nicklas Nordborg
Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
8:59 AM Tickets #814,​815 batch updated by Nicklas Nordborg
fixed: (In [3910]) Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
8:57 AM Changeset [3909] by Nicklas Nordborg
References #721: Store data in files instead of in the database …
7:51 AM Ticket #815 (Updgrade to Hibernate 3.2.5) created by Nicklas Nordborg
It has been around since July so it should be stable. It fixes a …
7:48 AM Ticket #814 (Update Postgres JDBC driver to latest) created by Nicklas Nordborg
There is a new version for Java 6 on the Postgres homepage. I have not …

Nov 5, 2007:

7:46 PM Changeset [3908] by Martin Svensson
References #809 Updated javadoc
2:58 PM Changeset [3907] by Martin Svensson
References #809. Smaller adjustments.
2:24 PM Changeset [3906] by Nicklas Nordborg
Fixes #813: Postgres db-engine ignores schema information in …
2:24 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) closed by Nicklas Nordborg
fixed: (In [3906]) Fixes #813: Postgres db-engine ignores schema information …
12:45 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) created by Nicklas Nordborg
This causes problem when applying the performance fix in 2.4.4 (#796) …
11:13 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) closed by Nicklas Nordborg
duplicate
11:06 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) created by Nicklas Nordborg
Allow wildcard or regular expressions in column mappings when …
11:05 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) created by Jari Häkkinen
Allow wildcard or regular expressions in column mappings when …
10:59 AM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) closed by Nicklas Nordborg
fixed: (In [3905]) Fixes #810: Implement query options for Include.ANNOTATED …
10:59 AM Changeset [3905] by Nicklas Nordborg
Fixes #810: Implement query options for Include.ANNOTATED and …

Nov 2, 2007:

12:01 PM Changeset [3904] by Nicklas Nordborg
References #746:Transfer existing UML diagrams to latest MagicDraw?

Nov 1, 2007:

2:50 PM WikiStart edited by Jari Häkkinen
Clarified GPL license version. (diff)
2:46 PM Changeset [3903] by Nicklas Nordborg
Recommend Postgres users to use at least 8.2
1:09 PM Changeset [3902] by Nicklas Nordborg
Added svndigest:ignore to testdata directory
11:33 AM Changeset [3901] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
11:33 AM Changeset [3900] by Nicklas Nordborg
Fixes #612: Add checks in the core so that unsaved objects are not …
11:33 AM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) closed by Nicklas Nordborg
fixed: (In [3900]) Fixes #612: Add checks in the core so that unsaved objects …
11:17 AM Changeset [3899] by Nicklas Nordborg
References #721: Store data in files instead of in the database …
9:20 AM WikiStart edited by Jari Häkkinen
Clarified GPL license version. (diff)
8:15 AM Changeset [3898] by Nicklas Nordborg
References #806: Experimental factor values display on Experiment page …

Oct 31, 2007:

3:59 PM Changeset [3897] by Martin Svensson
References #809 Described available services and describe how to …
2:12 PM Changeset [3896] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
1:34 PM DownloadPage edited by Jari Häkkinen
Releasing 2.4.5 (diff)
1:01 PM Changeset [3895] by Jari Häkkinen
Changes for future release 2.4.6
12:52 PM Changeset [3894] by Jari Häkkinen
Tagging version 2.4.5
12:52 PM Milestone BASE 2.4.5 completed
Revision Log: log:branches/2.4-stable@3856:3893
12:51 PM Changeset [3893] by Jari Häkkinen
Preparing release 2.4.5

Oct 30, 2007:

2:33 PM Ticket #524 (Read "Overview of user documentation" section) closed by Nicklas Nordborg
fixed: (In [3892]) Fixes #524: Read "Overview of user documentation" section
2:33 PM Changeset [3892] by Nicklas Nordborg
Fixes #524: Read "Overview of user documentation" section
1:58 PM Changeset [3891] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw?
10:49 AM Changeset [3890] by Nicklas Nordborg
Fixes #707: Can't unlink items that have been put in the trashcan
10:49 AM Ticket #707 (Can't unlink items that have been put in the trashcan) closed by Nicklas Nordborg
fixed: (In [3890]) Fixes #707: Can't unlink items that have been put in the …

Oct 29, 2007:

2:08 PM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) created by Nicklas Nordborg
The core already defines the two query options, …
2:03 PM Changeset [3889] by Nicklas Nordborg
References #411: Extending compressed file support and storage …
2:00 PM Changeset [3888] by Nicklas Nordborg
References #707: Can't unlink items that have been put in the trashcan …
9:45 AM Changeset [3887] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Median-ratio …
8:36 AM Changeset [3886] by Martin Svensson
Replaced old jar-file and updated classpaths

Oct 27, 2007:

4:37 PM Changeset [3885] by Martin Svensson
References #809

Oct 26, 2007:

4:20 PM Changeset [3884] by Martin Svensson
References #809 Documentation of base web services has begun. …
1:40 PM Ticket #809 (Read Web services documentation) created by Martin Svensson
Read documentation about BASE web services …
1:29 PM Changeset [3883] by Nicklas Nordborg
Fixes #808: Remove Thread.sleep() from HibernateUtil?.loadIterator
1:29 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) closed by Nicklas Nordborg
fixed: (In [3883]) Fixes #808: Remove Thread.sleep() from …
1:21 PM Changeset [3882] by Nicklas Nordborg
References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
1:19 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) created by Nicklas Nordborg
http://base.thep.lu.se/browser/tags/2.4.4/src/core/net/sf/basedb/core/H
12:41 PM Changeset [3881] by Martin Svensson
References #492 WSDL files are now generated when running ant-target …
11:08 AM Changeset [3880] by Nicklas Nordborg
Added column to Jobs list that displays running time (in minutes and …
11:01 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) closed by Nicklas Nordborg
fixed: (In [3879]) Fixes #797: Enhance performance for LOWESS and Medin-ratio …
11:01 AM Changeset [3879] by Nicklas Nordborg
Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins

Oct 25, 2007:

11:57 AM Changeset [3878] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Median-ratio …
9:57 AM Changeset [3877] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Medin-ratio …

Oct 24, 2007:

4:58 PM Changeset [3876] by Martin Svensson
References #492 Tests for webservices completed. Fixed the bugs that …
12:53 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) closed by Nicklas Nordborg
fixed: (In [3875]) Fixes #806: Experimental factor values display on …
12:53 PM Changeset [3875] by Nicklas Nordborg
Fixes #806: Experimental factor values display on Experiment page can …

Oct 23, 2007:

4:48 PM Changeset [3874] by Martin Svensson
References #492 Creating tests for webservices
2:15 PM Changeset [3873] by Nicklas Nordborg
References #721, fixes #789: Extended test program to include more …
2:15 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) closed by Nicklas Nordborg
fixed: (In [3873]) References #721, fixes #789: Extended test program to …
9:54 AM Changeset [3872] by Nicklas Nordborg
References #807: Doc is now read for reading

Oct 22, 2007:

2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) closed by Nicklas Nordborg
fixed
2:21 PM Changeset [3871] by Nicklas Nordborg
Fixes #595: Add option to stop a plug-in from beeing executed by the …

Oct 20, 2007:

3:30 AM WikiStart edited by Peter Johansson
typo (diff)

Oct 19, 2007:

4:25 PM Changeset [3870] by Nicklas Nordborg
Added section about class loading issues in plug-in developer section.
3:01 PM Changeset [3869] by Nicklas Nordborg
References #807 Added documentation for plug-in developers.
2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) created by Nicklas Nordborg
This affects several sections: * User documentation about platforms: …
1:10 PM Changeset [3868] by Nicklas Nordborg
References #360: Make subsections on view pages hideable * Added …
11:49 AM Changeset [3867] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …
9:28 AM Changeset [3866] by Nicklas Nordborg
References #364: Support for automatic install of non-core plugins …
9:20 AM Changeset [3865] by Nicklas Nordborg
References #721: Create doc/html/userdoc/platforms directory to make …
8:06 AM Changeset [3864] by Nicklas Nordborg
References #805: Add syntax coloring to code examples in docbook Fix …

Oct 18, 2007:

5:18 PM Changeset [3863] by Jari Häkkinen
Fixing link to baseplugins web site.
5:18 PM Changeset [3862] by Jari Häkkinen
Fixing link to baseplugins web site.
4:33 PM Changeset [3861] by Martin Svensson
References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
2:59 PM Changeset [3860] by Nicklas Nordborg
References #721: Started to update the docbook documentation with …
12:03 PM Changeset [3859] by Nicklas Nordborg
References #789: Extend "Experiment overview" to check for problems …
9:40 AM WikiStart edited by Nicklas Nordborg
Changed link to BASE plug-ins web site (diff)
Note: See TracTimeline for information about the timeline view.