Timeline
Nov 14, 2007:
- 8:23 PM Ticket #826 (CEL file validator doesn't work for binary XDA type files) created by
- It does work for text format and binary Calvin format. The validation …
- 2:17 PM Ticket #809 (Read Web services documentation) closed by
- fixed: (In [3969]) Fixes #809: Read Web services documentation
- 2:17 PM Changeset [3969] by
- Fixes #809: Read Web services documentation
- 2:11 PM Ticket #825 (Fix bad documentation screenshots) created by
- Some of the screenshots in the docbook documentation look very …
- 2:04 PM Ticket #824 (Update appendix: Menuguide) closed by
- fixed: (In [3968]) Fixes #824 appendix is now updated
- 2:04 PM Changeset [3968] by
- Fixes #824 appendix is now updated
- 1:42 PM Changeset [3967] by
- References #492: Web services axis2.xml is now installed in the …
- 1:39 PM Ticket #824 (Update appendix: Menuguide) created by
- New menu choices have been added to the webclient and need to be …
- 12:45 PM Ticket #823 (Refactor classes in net.sf.basedb.ws.info.*) closed by
- fixed
- 12:04 PM Changeset [3966] by
- Fixes #666 Picture added
- 12:04 PM Ticket #666 (Image in chapter 6.2.3) closed by
- fixed: (In [3966]) Fixes #666 Picture added
- 11:04 AM Changeset [3965] by
- Fixed classpath for programs in /bin
- 9:45 AM Changeset [3964] by
- References #492: Web services Redesigned file download to work with …
- 9:40 AM Changeset [3963] by
- References #821: Split up core.aar Only create regenerate WSDL files …
- 9:22 AM Changeset [3962] by
- References #821: Split up core.aar Fixed classpath for test programs.
Nov 13, 2007:
- 8:25 PM Ticket #822 (Create a separate WS-client dist) closed by
- fixed: (In [3961]) Fixes #822.
- 8:25 PM Changeset [3961] by
- Fixes #822.
- 8:25 PM Changeset [3960] by
- References #807 Added documentation for plug-in developers.
- 4:30 PM Changeset [3959] by
- References #823 Added a serialVersionUID to the info classes that …
- 2:59 PM Changeset [3958] by
- References #822: Create a separate WS-client dist Added some more …
- 2:31 PM Changeset [3957] by
- References #823 Info classes implement Serializable-interface. Added …
- 2:04 PM Changeset [3956] by
- References #823 The *Info classes are now refactored. The property of …
- 1:59 PM Changeset [3955] by
- Renamed config to META-INF
- 1:37 PM Changeset [3954] by
- References #822: Create a separate WS-client dist
- 1:36 PM Changeset [3953] by
- 8:49 AM Ticket #821 (Split up core.aar) closed by
- fixed: (In [3952]) Fixes #821: Split up core.aar
- 8:49 AM Changeset [3952] by
- Fixes #821: Split up core.aar
Nov 12, 2007:
- 3:15 PM Changeset [3951] by
- References #821 and #823. Moved around info.* stuff to prepare for …
- 3:13 PM Changeset [3950] by
- Fixes #668. Not all icons were put inside (), only those which are in …
- 3:13 PM Ticket #668 (Displaying icons in the text) closed by
- fixed: (In [3950]) Fixes #668. Not all icons were put inside (), only those …
- 2:31 PM Ticket #823 (Refactor classes in net.sf.basedb.ws.info.*) created by
- The info classes used in the web services need to be refactored. They …
- 2:23 PM Changeset [3949] by
- Fixes #820
- 2:23 PM Ticket #820 (Trying to delete a plugin that has been used by a job results in ...) closed by
- fixed: (In [3949]) Fixes #820
- 2:18 PM Ticket #822 (Create a separate WS-client dist) created by
- A WS client dist with the following structure: /lib -> …
- 2:09 PM Ticket #821 (Split up core.aar) created by
- As it is now everything in WS are put in one aar-file when building …
- 2:04 PM Ticket #492 (Web services) closed by
- fixed: The items in this ticket are done, further development in Base web …
- 12:55 PM Ticket #820 (Trying to delete a plugin that has been used by a job results in ...) created by
- Pb on the trashcan when attempting to remove a plugin definition and …
- 11:50 AM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) closed by
- fixed: All diagrams from the data-layer are now transfered. Core-layer …
- 11:36 AM Changeset [3948] by
- References #746. * Fixes links going from javadoc to docbook. * …
- 11:33 AM Changeset [3947] by
- Fixes #819: Last file that needed links to javadoc.
- 11:33 AM Ticket #819 (Link classnames in docbook to their javadoc) closed by
- fixed: (In [3947]) Fixes #819: Last file that needed links to javadoc.
- 9:37 AM Changeset [3946] by
- References #819 Described how to use the new attribute with classname …
- 9:08 AM Changeset [3945] by
- References #819: Links to javadoc can now work from any subdirectory level.
Nov 9, 2007:
- 4:31 PM Changeset [3944] by
- References #819 The class-tag and interface-tag are now linking to the …
- 3:00 PM Changeset [3943] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 9:07 AM Ticket #819 (Link classnames in docbook to their javadoc) created by
- The 'classname' tag in docbook should link the class to the it's …
Nov 8, 2007:
- 3:33 PM Changeset [3942] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 2:13 PM Changeset [3941] by
- Correct warnings in Javadoc
- 1:05 PM Changeset [3940] by
- Fixes #807 Documentation has been read and some minor changes have …
- 1:05 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) closed by
- fixed: (In [3940]) Fixes #807 Documentation has been read and some minor …
- 12:08 PM Changeset [3939] by
- References #492: Web services * Try to delete temp files generated …
- 9:23 AM Changeset [3938] by
- Fixes #818: JarClassLoader? doesn't load classes correctly
- 9:23 AM Ticket #818 (JarClassLoader doesn't load classes correctly) closed by
- fixed: (In [3938]) Fixes #818: JarClassLoader? doesn't load classes correctly
- 9:00 AM Ticket #818 (JarClassLoader doesn't load classes correctly) created by
- Classes that are larger than a specific number of bytes are not loaded …
- 8:25 AM Changeset [3937] by
- References #492: Web services * Fixed warning message about log4j …
- 7:54 AM Changeset [3936] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
Nov 7, 2007:
- 7:22 PM DownloadPage edited by
- Updating revision number for BASE 2.5.0beta release. (diff)
- 7:16 PM Changeset [3935] by
- Tagging release 2.5.0beta
- 7:16 PM Changeset [3934] by
- Removing, problems uppgrading from 2.4 database schema to the latest …
- 6:01 PM Changeset [3933] by
- Fixes #655
- 6:01 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- fixed: (In [3933]) Fixes #655
- 5:33 PM Ticket #779 (Improve validation of job parameters in Base1PluginExecuter) closed by
- fixed
- 5:32 PM Changeset [3932] by
- Fixes #817
- 5:32 PM Ticket #817 (Hide deleted job parameters in Base1PluginExecuter) closed by
- fixed: (In [3932]) Fixes #817
- 5:27 PM Ticket #816 (Duplicate parameter) closed by
- invalid
- 5:27 PM Ticket #816 (Duplicate parameter) reopened by
- This is changed. Duplicates are allowed. It is up to the plugin …
- 5:18 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by
- There is still a problem with this. Users that installed the first …
- 4:52 PM Ticket #817 (Hide deleted job parameters in Base1PluginExecuter) created by
- Job parameters that are marked as deleted should be hidden from the …
- 4:38 PM Changeset [3931] by
- had some trouble with the default value of the annotation parameter
- 4:23 PM DownloadPage edited by
- Releasing 2.5.0beta (diff)
- 4:08 PM Changeset [3930] by
- Tagging release 2.5.0beta
- 4:07 PM Changeset [3929] by
- Fixed typo.
- 3:10 PM Changeset [3928] by
- Removing, problems compiling with Java 1.5
- 3:05 PM Changeset [3927] by
- Fixes issue with compiling under Java 1.5
- 2:41 PM Changeset [3926] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 1:49 PM Changeset [3925] by
- Tagging release 2.5.0beta
- 1:47 PM Changeset [3924] by
- Preparing release of 2.5.0beta.
- 1:28 PM Changeset [3923] by
- Fixes #816
- 1:28 PM Ticket #816 (Duplicate parameter) closed by
- fixed: (In [3923]) Fixes #816
- 1:21 PM Changeset [3922] by
- set svn to ignore the wsdl folder in base/misc/
- 1:10 PM Changeset [3921] by
- References #809 ready to be read
- 12:43 PM Changeset [3920] by
- References #492 Creates a new OutputStream? for each upload and always …
- 11:04 AM Ticket #816 (Duplicate parameter) created by
- The Base1PluginExecuter must check it there is duplicate parameters in …
Nov 6, 2007:
- 4:49 PM Changeset [3919] by
- References #492 Modified the download methods to eliminate the …
- 2:54 PM Changeset [3918] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 2:43 PM Changeset [3917] by
- Fixes #717: Make initdb, updatedb and other scripts accept a username
- 2:43 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) closed by
- fixed: (In [3917]) Fixes #717: Make initdb, updatedb and other scripts accept …
- 1:03 PM Changeset [3916] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 11:56 AM Changeset [3915] by
- Fixes #795
- 11:56 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) closed by
- fixed: (In [3915]) Fixes #795
- 10:51 AM Changeset [3914] by
- References #809 Documentation updated
- 10:42 AM Changeset [3913] by
- Fixes #778: Add expression to formula
- 10:42 AM Ticket #778 (Add expression to formula) closed by
- fixed: (In [3913]) Fixes #778: Add expression to formula
- 9:44 AM Changeset [3912] by
- References #721. Fixes NPE in autodetect file format function when …
- 9:42 AM Changeset [3911] by
- Fixes #811: Wildcard or regular expressions in raw data column …
- 9:42 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) closed by
- fixed: (In [3911]) Fixes #811: Wildcard or regular expressions in raw data …
- 8:59 AM Changeset [3910] by
- Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
- 8:59 AM Tickets #814,815 batch updated by
- fixed: (In [3910]) Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
- 8:57 AM Changeset [3909] by
- References #721: Store data in files instead of in the database …
- 7:51 AM Ticket #815 (Updgrade to Hibernate 3.2.5) created by
- It has been around since July so it should be stable. It fixes a …
- 7:48 AM Ticket #814 (Update Postgres JDBC driver to latest) created by
- There is a new version for Java 6 on the Postgres homepage. I have not …
Nov 5, 2007:
- 7:46 PM Changeset [3908] by
- References #809 Updated javadoc
- 2:58 PM Changeset [3907] by
- References #809. Smaller adjustments.
- 2:24 PM Changeset [3906] by
- Fixes #813: Postgres db-engine ignores schema information in …
- 2:24 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) closed by
- fixed: (In [3906]) Fixes #813: Postgres db-engine ignores schema information …
- 12:45 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) created by
- This causes problem when applying the performance fix in 2.4.4 (#796) …
- 11:13 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) closed by
- duplicate
- 11:06 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) created by
- Allow wildcard or regular expressions in column mappings when …
- 11:05 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) created by
- Allow wildcard or regular expressions in column mappings when …
- 10:59 AM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) closed by
- fixed: (In [3905]) Fixes #810: Implement query options for Include.ANNOTATED …
- 10:59 AM Changeset [3905] by
- Fixes #810: Implement query options for Include.ANNOTATED and …
Nov 2, 2007:
- 12:01 PM Changeset [3904] by
- References #746:Transfer existing UML diagrams to latest MagicDraw? …
Nov 1, 2007:
- 2:50 PM WikiStart edited by
- Clarified GPL license version. (diff)
- 2:46 PM Changeset [3903] by
- Recommend Postgres users to use at least 8.2
- 1:09 PM Changeset [3902] by
- Added svndigest:ignore to testdata directory
- 11:33 AM Changeset [3901] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 11:33 AM Changeset [3900] by
- Fixes #612: Add checks in the core so that unsaved objects are not …
- 11:33 AM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) closed by
- fixed: (In [3900]) Fixes #612: Add checks in the core so that unsaved objects …
- 11:17 AM Changeset [3899] by
- References #721: Store data in files instead of in the database …
- 9:20 AM WikiStart edited by
- Clarified GPL license version. (diff)
- 8:15 AM Changeset [3898] by
- References #806: Experimental factor values display on Experiment page …
Oct 31, 2007:
- 3:59 PM Changeset [3897] by
- References #809 Described available services and describe how to …
- 2:12 PM Changeset [3896] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 1:34 PM DownloadPage edited by
- Releasing 2.4.5 (diff)
- 1:01 PM Changeset [3895] by
- Changes for future release 2.4.6
- 12:52 PM Changeset [3894] by
- Tagging version 2.4.5
- 12:52 PM Milestone BASE 2.4.5 completed
- Revision Log: log:branches/2.4-stable@3856:3893
- 12:51 PM Changeset [3893] by
- Preparing release 2.4.5
Oct 30, 2007:
- 2:33 PM Ticket #524 (Read "Overview of user documentation" section) closed by
- fixed: (In [3892]) Fixes #524: Read "Overview of user documentation" section
- 2:33 PM Changeset [3892] by
- Fixes #524: Read "Overview of user documentation" section
- 1:58 PM Changeset [3891] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 10:49 AM Changeset [3890] by
- Fixes #707: Can't unlink items that have been put in the trashcan
- 10:49 AM Ticket #707 (Can't unlink items that have been put in the trashcan) closed by
- fixed: (In [3890]) Fixes #707: Can't unlink items that have been put in the …
Oct 29, 2007:
- 2:08 PM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) created by
- The core already defines the two query options, …
- 2:03 PM Changeset [3889] by
- References #411: Extending compressed file support and storage …
- 2:00 PM Changeset [3888] by
- References #707: Can't unlink items that have been put in the trashcan …
- 9:45 AM Changeset [3887] by
- References #797: Enhance performance for LOWESS and Median-ratio …
- 8:36 AM Changeset [3886] by
- Replaced old jar-file and updated classpaths
Oct 27, 2007:
- 4:37 PM Changeset [3885] by
- References #809
Oct 26, 2007:
- 4:20 PM Changeset [3884] by
- References #809 Documentation of base web services has begun. …
- 1:40 PM Ticket #809 (Read Web services documentation) created by
- Read documentation about BASE web services …
- 1:29 PM Changeset [3883] by
- Fixes #808: Remove Thread.sleep() from HibernateUtil?.loadIterator
- 1:29 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) closed by
- fixed: (In [3883]) Fixes #808: Remove Thread.sleep() from …
- 1:21 PM Changeset [3882] by
- References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
- 1:19 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) created by
- http://base.thep.lu.se/browser/tags/2.4.4/src/core/net/sf/basedb/core/H …
- 12:41 PM Changeset [3881] by
- References #492 WSDL files are now generated when running ant-target …
- 11:08 AM Changeset [3880] by
- Added column to Jobs list that displays running time (in minutes and …
- 11:01 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) closed by
- fixed: (In [3879]) Fixes #797: Enhance performance for LOWESS and Medin-ratio …
- 11:01 AM Changeset [3879] by
- Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins
Oct 25, 2007:
- 11:57 AM Changeset [3878] by
- References #797: Enhance performance for LOWESS and Median-ratio …
- 9:57 AM Changeset [3877] by
- References #797: Enhance performance for LOWESS and Medin-ratio …
Oct 24, 2007:
- 4:58 PM Changeset [3876] by
- References #492 Tests for webservices completed. Fixed the bugs that …
- 12:53 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) closed by
- fixed: (In [3875]) Fixes #806: Experimental factor values display on …
- 12:53 PM Changeset [3875] by
- Fixes #806: Experimental factor values display on Experiment page can …
Oct 23, 2007:
- 4:48 PM Changeset [3874] by
- References #492 Creating tests for webservices
- 2:15 PM Changeset [3873] by
- References #721, fixes #789: Extended test program to include more …
- 2:15 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) closed by
- fixed: (In [3873]) References #721, fixes #789: Extended test program to …
- 9:54 AM Changeset [3872] by
- References #807: Doc is now read for reading
Oct 22, 2007:
- 2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) closed by
- fixed
- 2:21 PM Changeset [3871] by
- Fixes #595: Add option to stop a plug-in from beeing executed by the …
Oct 20, 2007:
- 3:30 AM WikiStart edited by
- typo (diff)
Oct 19, 2007:
- 4:25 PM Changeset [3870] by
- Added section about class loading issues in plug-in developer section.
- 3:01 PM Changeset [3869] by
- References #807 Added documentation for plug-in developers.
- 2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) created by
- This affects several sections: * User documentation about platforms: …
- 1:10 PM Changeset [3868] by
- References #360: Make subsections on view pages hideable * Added …
- 11:49 AM Changeset [3867] by
- References #721: Store data in files instead of in the database * …
- 9:28 AM Changeset [3866] by
- References #364: Support for automatic install of non-core plugins …
- 9:20 AM Changeset [3865] by
- References #721: Create doc/html/userdoc/platforms directory to make …
- 8:06 AM Changeset [3864] by
- References #805: Add syntax coloring to code examples in docbook Fix …
Oct 18, 2007:
- 5:18 PM Changeset [3863] by
- Fixing link to baseplugins web site.
- 5:18 PM Changeset [3862] by
- Fixing link to baseplugins web site.
- 4:33 PM Changeset [3861] by
- References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
- 2:59 PM Changeset [3860] by
- References #721: Started to update the docbook documentation with …
- 12:03 PM Changeset [3859] by
- References #789: Extend "Experiment overview" to check for problems …
- 9:40 AM WikiStart edited by
- Changed link to BASE plug-ins web site (diff)
Oct 17, 2007:
- 7:15 PM Changeset [3858] by
- References #794: Additional fix needed in trunk due to API changes in …
- 1:39 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) created by
- Problem was posted on the mailing list: >> >> We are trying to …
- 12:41 PM Changeset [3857] by
- Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
- 11:58 AM DownloadPage edited by
- Releasing 2.4.4 (diff)
- 11:30 AM Changeset [3856] by
- Changes for future release 2.4.5
- 11:27 AM Changeset [3855] by
- Tagging version 2.4.4
- 11:27 AM Milestone BASE 2.4.4 completed
- Revision Log: log:branches/2.4-stable@3788:3854
- 11:20 AM Changeset [3854] by
- Preparing release 2.4.4
- 11:18 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) closed by
- fixed: The tests shows that the fixes improve performance, i.e., creation of …
- 11:14 AM Ticket #751 (Fail to delete item from table view) closed by
- invalid: Seems to have been caused by Tomcat being overloaded.
- 11:09 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) closed by
- invalid: This was an issue here for the affected files, but the problem belongs …
- 11:04 AM Ticket #748 (MeV application fail to load data) closed by
- worksforme
- 10:25 AM Changeset [3853] by
- Fixes #768.
- 10:25 AM Ticket #768 (Add information about running reporter update after migration if needed) closed by
- fixed: (In [3853]) Fixes #768.
- 9:58 AM Changeset [3852] by
- References #721: Auto-detect function is now aware of FileStoreEnabled? …
- 8:56 AM Changeset [3851] by
- References #721: Filter on file extension when selecting platform data …
- 8:45 AM Changeset [3850] by
- References #788: Select project default platforms / variant The …
- 8:29 AM Changeset [3849] by
- References #492 Updating license information and 3rd party components
- 8:17 AM Changeset [3848] by
- References #721: Can now edit raw bioassays, array designs and …
- 7:52 AM Ticket #788 (Select project default platforms / variant) closed by
- fixed: (In [3847]) Fixes #788: Select project default platforms / variant
- 7:52 AM Changeset [3847] by
- Fixes #788: Select project default platforms / variant
Oct 16, 2007:
- 10:23 PM Ticket #804 (Add links to example code in the Plugins section of the documentation) closed by
- worksforme: It is section 23.7: …
- 4:52 PM Changeset [3846] by
- References #492 Copying webservices into trunk
- 3:18 PM Changeset [3845] by
- References #492 Copying webservices into trunk
- 3:12 PM Changeset [3844] by
- References #492 Copying webservices into trunk
- 2:51 PM Changeset [3843] by
- References #492 Copying webservices into trunk
- 2:50 PM Changeset [3842] by
- References #492 Copying webservices into trunk
- 2:44 PM Changeset [3841] by
- References #492 Copying webservices into trunk
- 1:50 PM Changeset [3840] by
- Fixes #667.
- 1:50 PM Ticket #667 (Move ch. 7 to a lower level) closed by
- fixed: (In [3840]) Fixes #667.
- 1:41 PM Changeset [3839] by
- References #492 Updated javadoc
- 1:38 PM Changeset [3838] by
- Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) closed by
- fixed: (In [3838]) Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) created by
- 10:43 AM Ticket #804 (Add links to example code in the Plugins section of the documentation) created by
- It may already exist but this needs t be checked.
- 10:40 AM Ticket #730 (Documentation figures should be centered by default) closed by
- worksforme
Oct 15, 2007:
- 7:43 PM Changeset [3837] by
- No longer implement the FilenameFilter? interface since it couldn't be …
- 2:58 PM Changeset [3836] by
- References #492 A BioAssaySet? can now be downloaded in MeV-format …
- 2:26 PM Changeset [3835] by
- References #721. Updated documentation.
- 1:55 PM Changeset [3834] by
- Export methods that take an OutputStream? as a parameter are now public …
- 9:36 AM Changeset [3833] by
- Updated "Development ideas" with information about already implemented …
- 9:25 AM Changeset [3832] by
- References #364. * Test program now looks for the test plug-ins: …
- 8:27 AM Changeset [3831] by
- References #492 Updated copyright statement
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