Timeline



Oct 30, 2007:

2:38 PM Ticket #729 (./jobagent.sh should accept command `status`) updated by Nicklas Nordborg
> "compliance with other unix startup scripts" Hmmm... what exactly …
2:33 PM Ticket #524 (Read "Overview of user documentation" section) closed by Nicklas Nordborg
fixed: (In [3892]) Fixes #524: Read "Overview of user documentation" section
2:33 PM Changeset [3892] by Nicklas Nordborg
Fixes #524: Read "Overview of user documentation" section
1:58 PM Changeset [3891] by Nicklas Nordborg
References #746: Transfer existing UML diagrams to latest MagicDraw
1:58 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) updated by Nicklas Nordborg
(In [3891]) References #746: Transfer existing UML diagrams to latest …
10:49 AM Changeset [3890] by Nicklas Nordborg
Fixes #707: Can't unlink items that have been put in the trashcan
10:49 AM Ticket #707 (Can't unlink items that have been put in the trashcan) closed by Nicklas Nordborg
fixed: (In [3890]) Fixes #707: Can't unlink items that have been put in the …

Oct 29, 2007:

2:36 PM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) updated by Nicklas Nordborg
Type changed
2:08 PM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) created by Nicklas Nordborg
The core already defines the two query options, …
2:03 PM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
(In [3889]) References #411: Extending compressed file support and …
2:03 PM Changeset [3889] by Nicklas Nordborg
References #411: Extending compressed file support and storage …
2:00 PM Changeset [3888] by Nicklas Nordborg
References #707: Can't unlink items that have been put in the trashcan …
2:00 PM Ticket #707 (Can't unlink items that have been put in the trashcan) updated by Nicklas Nordborg
(In [3888]) References #707: Can't unlink items that have been put in …
9:45 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) updated by Nicklas Nordborg
(In [3887]) References #797: Enhance performance for LOWESS and …
9:45 AM Changeset [3887] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Median-ratio …
8:36 AM Changeset [3886] by Martin Svensson
Replaced old jar-file and updated classpaths

Oct 27, 2007:

4:37 PM Ticket #809 (Read Web services documentation) updated by Martin Svensson
(In [3885]) References #809
4:37 PM Changeset [3885] by Martin Svensson
References #809

Oct 26, 2007:

4:20 PM Changeset [3884] by Martin Svensson
References #809 Documentation of base web services has begun. …
4:20 PM Ticket #809 (Read Web services documentation) updated by Martin Svensson
(In [3884]) References #809 Documentation of base web services has …
1:42 PM Ticket #492 (Web services) updated by Martin Svensson
Component changed
Documentation is a separate ticket: see ticket#809
1:40 PM Ticket #809 (Read Web services documentation) updated by Martin Svensson
Status changed
1:40 PM Ticket #809 (Read Web services documentation) created by Martin Svensson
Read documentation about BASE web services …
1:29 PM Changeset [3883] by Nicklas Nordborg
Fixes #808: Remove Thread.sleep() from HibernateUtil.loadIterator
1:29 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) closed by Nicklas Nordborg
fixed: (In [3883]) Fixes #808: Remove Thread.sleep() from …
1:21 PM Changeset [3882] by Nicklas Nordborg
References #808: Remove Thread.sleep() from HibernateUtil.loadIterator …
1:21 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) updated by Nicklas Nordborg
(In [3882]) References #808: Remove Thread.sleep() from …
1:19 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) created by Nicklas Nordborg
http://base.thep.lu.se/browser/tags/2.4.4/src/core/net/sf/basedb/core/H
12:41 PM Changeset [3881] by Martin Svensson
References #492 WSDL files are now generated when running ant-target …
12:41 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3881]) References #492 WSDL files are now generated when running …
11:08 AM Changeset [3880] by Nicklas Nordborg
Added column to Jobs list that displays running time (in minutes and …
11:08 AM Ticket #707 (Can't unlink items that have been put in the trashcan) updated by Nicklas Nordborg
Owner, Status changed
11:05 AM normalize.txt attached to Ticket #294 by Nicklas Nordborg
Normalization results after #797 has been fixed
11:02 AM perftest.txt attached to Ticket #797 by Nicklas Nordborg
Results of performance test with 10-40 bioassays
11:01 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) closed by Nicklas Nordborg
fixed: (In [3879]) Fixes #797: Enhance performance for LOWESS and Medin-ratio …
11:01 AM Changeset [3879] by Nicklas Nordborg
Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins

Oct 25, 2007:

12:02 PM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) updated by Nicklas Nordborg
Here is a useful SQL statement that can be used to compare intensity …
11:57 AM Changeset [3878] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Median-ratio …
11:57 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) updated by Nicklas Nordborg
(In [3878]) References #797: Enhance performance for LOWESS and …
9:57 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) updated by Nicklas Nordborg
(In [3877]) References #797: Enhance performance for LOWESS and …
9:57 AM Changeset [3877] by Nicklas Nordborg
References #797: Enhance performance for LOWESS and Medin-ratio …

Oct 24, 2007:

4:58 PM Changeset [3876] by Martin Svensson
References #492 Tests for webservices completed. Fixed the bugs that …
4:58 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3876]) References #492 Tests for webservices completed. Fixed the …
1:49 PM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) updated by Nicklas Nordborg
Status, Owner changed
12:53 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) closed by Nicklas Nordborg
fixed: (In [3875]) Fixes #806: Experimental factor values display on …
12:53 PM Changeset [3875] by Nicklas Nordborg
Fixes #806: Experimental factor values display on Experiment page can …

Oct 23, 2007:

4:48 PM Changeset [3874] by Martin Svensson
References #492 Creating tests for webservices
4:48 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3874]) References #492 Creating tests for webservices
2:22 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) updated by Nicklas Nordborg
Status, Owner changed
2:15 PM Changeset [3873] by Nicklas Nordborg
References #721, fixes #789: Extended test program to include more …
2:15 PM Tickets #721,​789 batch updated by Nicklas Nordborg
fixed: (In [3873]) References #721, fixes #789: Extended test program to …
9:55 AM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
Status, Priority, Owner, Summary changed
9:54 AM Changeset [3872] by Nicklas Nordborg
References #807: Doc is now read for reading
9:54 AM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
(In [3872]) References #807: Doc is now read for reading
8:54 AM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
Description changed

Oct 22, 2007:

2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) closed by Nicklas Nordborg
fixed
2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) updated by Nicklas Nordborg
(In [3871]) Fixes #595: Add option to stop a plug-in from beeing …
2:26 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by Nicklas Nordborg
Replying to nicklas: > (In [3871]) Fixes #595: Add option …
2:21 PM Changeset [3871] by Nicklas Nordborg
Fixes #595: Add option to stop a plug-in from beeing executed by the …
2:21 PM Tickets #595,​746 batch updated by Nicklas Nordborg
(In [3871]) Fixes #595: Add option to stop a plug-in from beeing …
7:59 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) updated by Nicklas Nordborg
Status changed

Oct 20, 2007:

3:30 AM WikiStart edited by Peter Johansson
typo (diff)

Oct 19, 2007:

4:25 PM Changeset [3870] by Nicklas Nordborg
Added section about class loading issues in plug-in developer section.
3:04 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
[3860] is mostly related to this ticket.
3:01 PM Changeset [3869] by Nicklas Nordborg
References #807 Added documentation for plug-in developers.
3:01 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
(In [3869]) References #807 Added documentation for plug-in developers.
2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) updated by Nicklas Nordborg
Status changed
2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) created by Nicklas Nordborg
This affects several sections: * User documentation about platforms: …
1:10 PM Changeset [3868] by Nicklas Nordborg
References #360: Make subsections on view pages hideable * Added …
1:10 PM Ticket #360 (Make subsections on view pages hideable) updated by Nicklas Nordborg
(In [3868]) References #360: Make subsections on view pages hideable …
11:49 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3867]) References #721: Store data in files instead of in the …
11:49 AM Changeset [3867] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …
9:28 AM Changeset [3866] by Nicklas Nordborg
References #364: Support for automatic install of non-core plugins …
9:28 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Nicklas Nordborg
(In [3866]) References #364: Support for automatic install of non-core …
9:20 AM Changeset [3865] by Nicklas Nordborg
References #721: Create doc/html/userdoc/platforms directory to make …
9:20 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3865]) References #721: Create doc/html/userdoc/platforms …
8:06 AM Ticket #805 (Add syntax coloring to code examples in docbook) updated by Nicklas Nordborg
(In [3864]) References #805: Add syntax coloring to code examples in …
8:06 AM Changeset [3864] by Nicklas Nordborg
References #805: Add syntax coloring to code examples in docbook Fix …

Oct 18, 2007:

5:18 PM Changeset [3863] by Jari Häkkinen
Fixing link to baseplugins web site.
5:18 PM Changeset [3862] by Jari Häkkinen
Fixing link to baseplugins web site.
4:33 PM Changeset [3861] by Martin Svensson
References #492 Added Services for RawBioAssay and ArrayDesign. Each …
4:33 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3861]) References #492 Added Services for RawBioAssay and …
2:59 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3860]) References #721: Started to update the docbook …
2:59 PM Changeset [3860] by Nicklas Nordborg
References #721: Started to update the docbook documentation with …
12:03 PM Changeset [3859] by Nicklas Nordborg
References #789: Extend "Experiment overview" to check for problems …
12:03 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) updated by Nicklas Nordborg
(In [3859]) References #789: Extend "Experiment overview" to check for …
9:40 AM WikiStart edited by Nicklas Nordborg
Changed link to BASE plug-ins web site (diff)

Oct 17, 2007:

7:15 PM Changeset [3858] by Nicklas Nordborg
References #794: Additional fix needed in trunk due to API changes in …
7:15 PM Ticket #794 (Long query may cause session to timeout) updated by Nicklas Nordborg
(In [3858]) References #794: Additional fix needed in trunk due to API …
1:41 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) updated by Nicklas Nordborg
The problem is that the web is using the …
1:39 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) updated by Nicklas Nordborg
Summary changed
1:39 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) created by Nicklas Nordborg
Problem was posted on the mailing list: >> >> We are trying to …
12:41 PM Changeset [3857] by Jari Häkkinen
Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
11:58 AM DownloadPage edited by Jari Häkkinen
Releasing 2.4.4 (diff)
11:30 AM Changeset [3856] by Jari Häkkinen
Changes for future release 2.4.5
11:27 AM Changeset [3855] by Jari Häkkinen
Tagging version 2.4.4
11:27 AM Milestone BASE 2.4.4 completed
Revision Log: log:branches/2.4-stable@3788:3854
11:20 AM Changeset [3854] by Jari Häkkinen
Preparing release 2.4.4
11:18 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) closed by Jari Häkkinen
fixed: The tests shows that the fixes improve performance, i.e., creation of …
11:14 AM Ticket #751 (Fail to delete item from table view) closed by Nicklas Nordborg
invalid: Seems to have been caused by Tomcat being overloaded.
11:09 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) closed by Jari Häkkinen
invalid: This was an issue here for the affected files, but the problem belongs …
11:06 AM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) updated by Nicklas Nordborg
Status, Owner changed
11:04 AM Ticket #748 (MeV application fail to load data) closed by Jari Häkkinen
worksforme
10:25 AM Changeset [3853] by Jari Häkkinen
Fixes #768.
10:25 AM Ticket #768 (Add information about running reporter update after migration if needed) closed by Jari Häkkinen
fixed: (In [3853]) Fixes #768.
9:58 AM Changeset [3852] by Nicklas Nordborg
References #721: Auto-detect function is now aware of FileStoreEnabled
9:58 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3852]) References #721: Auto-detect function is now aware of …
8:56 AM Changeset [3851] by Nicklas Nordborg
References #721: Filter on file extension when selecting platform data …
8:56 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3851]) References #721: Filter on file extension when selecting …
8:45 AM Changeset [3850] by Nicklas Nordborg
References #788: Select project default platforms / variant The …
8:45 AM Ticket #788 (Select project default platforms / variant) updated by Nicklas Nordborg
(In [3850]) References #788: Select project default platforms / …
8:34 AM Ticket #492 (Web services) updated by Martin Svensson
The development of web services is moved to the trunk and will no …
8:29 AM Changeset [3849] by Martin Svensson
References #492 Updating license information and 3rd party components
8:29 AM Ticket #492 (Web services) updated by Martin Svensson
(In [3849]) References #492 Updating license information and 3rd party …
8:17 AM Changeset [3848] by Nicklas Nordborg
References #721: Can now edit raw bioassays, array designs and …
8:17 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3848]) References #721: Can now edit raw bioassays, array designs …
7:52 AM Ticket #788 (Select project default platforms / variant) closed by Nicklas Nordborg
fixed: (In [3847]) Fixes #788: Select project default platforms / variant
7:52 AM Changeset [3847] by Nicklas Nordborg
Fixes #788: Select project default platforms / variant

Oct 16, 2007:

10:23 PM Ticket #804 (Add links to example code in the Plugins section of the documentation) closed by Nicklas Nordborg
worksforme: It is section 23.7: …
4:52 PM Changeset [3846] by Martin Svensson
References #492 Copying webservices into trunk
4:52 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3846]) References #492 Copying webservices into trunk
3:18 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3845]) References #492 Copying webservices into trunk
3:18 PM Changeset [3845] by Martin Svensson
References #492 Copying webservices into trunk
3:12 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3844]) References #492 Copying webservices into trunk
3:12 PM Changeset [3844] by Martin Svensson
References #492 Copying webservices into trunk
2:51 PM Changeset [3843] by Martin Svensson
References #492 Copying webservices into trunk
2:51 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3843]) References #492 Copying webservices into trunk
2:50 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3842]) References #492 Copying webservices into trunk
2:50 PM Changeset [3842] by Martin Svensson
References #492 Copying webservices into trunk
2:44 PM Changeset [3841] by Martin Svensson
References #492 Copying webservices into trunk
2:44 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3841]) References #492 Copying webservices into trunk
1:50 PM Changeset [3840] by Jari Häkkinen
Fixes #667.
1:50 PM Ticket #667 (Move ch. 7 to a lower level) closed by Jari Häkkinen
fixed: (In [3840]) Fixes #667.
1:41 PM Changeset [3839] by Martin Svensson
References #492 Updated javadoc
1:41 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3839]) References #492 Updated javadoc
1:39 PM Ticket #788 (Select project default platforms / variant) updated by Nicklas Nordborg
Status, Owner changed
1:38 PM Changeset [3838] by Nicklas Nordborg
Fixes #805: Add syntax coloring to code examples in docbook
1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) closed by Nicklas Nordborg
fixed: (In [3838]) Fixes #805: Add syntax coloring to code examples in docbook
1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) created by Nicklas Nordborg
11:06 AM Ticket #554 (Write "Core developer reference.") updated by Jari Häkkinen
Milestone changed
11:06 AM Ticket #552 (Write "API overview" section) updated by Jari Häkkinen
Milestone changed
11:05 AM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) updated by Jari Häkkinen
Milestone changed
11:05 AM Ticket #600 (Write "Appendix: Other configuration files") updated by Jari Häkkinen
Milestone changed
11:05 AM Ticket #599 (Write "Appendix: migrate.properties reference") updated by Jari Häkkinen
Milestone changed
11:05 AM Ticket #532 (Read "Jobs" section) updated by Jari Häkkinen
Milestone changed
11:04 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Jari Häkkinen
Milestone changed
11:04 AM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by Jari Häkkinen
Milestone changed
11:04 AM Ticket #522 (Write "Why use BASE" section) updated by Jari Häkkinen
Milestone changed
11:01 AM Ticket #738 (Implement file upload as a pure servlet) updated by Jari Häkkinen
Milestone changed
10:59 AM Ticket #436 (Create extension system for the web application) updated by Jari Häkkinen
Milestone changed
10:58 AM Ticket #717 (Make initdb, updatedb and other scripts accept a username) updated by Jari Häkkinen
Milestone changed
10:57 AM Ticket #450 (Plugin for importing Imagene raw data) updated by Jari Häkkinen
Milestone changed
10:55 AM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) updated by Jari Häkkinen
Milestone changed
10:55 AM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Jari Häkkinen
Milestone changed
10:52 AM Ticket #425 (Store the character encoding for text files) updated by Jari Häkkinen
Milestone changed
Is there a need to fix this ticket.
10:49 AM Ticket #597 (Read "Appendix: web.xml reference") updated by Jari Häkkinen
Milestone changed
10:49 AM Ticket #596 (Read "Appendix: raw-data-types.xml reference") updated by Jari Häkkinen
Milestone changed
10:48 AM Ticket #553 (Read "Javadoc" section) updated by Jari Häkkinen
Description, Milestone changed
10:43 AM Ticket #804 (Add links to example code in the Plugins section of the documentation) created by Jari Häkkinen
It may already exist but this needs t be checked.
10:40 AM Ticket #730 (Documentation figures should be centered by default) closed by Jari Häkkinen
worksforme
10:39 AM Ticket #621 (Write 'Plate' section) updated by Jari Häkkinen
Owner, Milestone changed

Oct 15, 2007:

7:43 PM Changeset [3837] by Nicklas Nordborg
No longer implement the FilenameFilter interface since it couldn't be …
2:58 PM Changeset [3836] by Martin Svensson
References #492 A BioAssaySet can now be downloaded in MeV-format …
2:58 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3836]) References #492 A BioAssaySet can now be downloaded in …
2:26 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3835]) References #721. Updated documentation.
2:26 PM Changeset [3835] by Nicklas Nordborg
References #721. Updated documentation.
1:55 PM Changeset [3834] by Martin Svensson
Export methods that take an OutputStream as a parameter are now public …
9:36 AM Changeset [3833] by Nicklas Nordborg
Updated "Development ideas" with information about already implemented …
9:25 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Nicklas Nordborg
(In [3832]) References #364. * Test program now looks for the test …
9:25 AM Changeset [3832] by Nicklas Nordborg
References #364. * Test program now looks for the test plug-ins: …
8:27 AM Changeset [3831] by Martin Svensson
References #492 Updated copyright statement
8:27 AM Ticket #492 (Web services) updated by Martin Svensson
(In [3831]) References #492 Updated copyright statement

Oct 13, 2007:

12:48 AM Changeset [3830] by Jari Häkkinen
Adding files that was not merged from trunk previously.

Oct 12, 2007:

11:08 PM Changeset [3829] by Jari Häkkinen
Fixing copyright statement.
11:07 PM Changeset [3828] by Jari Häkkinen
Fixing svn properties and eol characters.
9:04 PM Changeset [3827] by Jari Häkkinen
Merged log:trunk#3795:3824 into webservices branch.
4:09 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3826]) References #492 Extended the services for bioassaysets. A …
4:09 PM Changeset [3826] by Martin Svensson
References #492 Extended the services for bioassaysets. A download …
3:06 PM Changeset [3825] by Nicklas Nordborg
Fixes #803: Experiment overview is broken if protocols with …
3:06 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) closed by Nicklas Nordborg
fixed: (In [3825]) Fixes #803: Experiment overview is broken if protocols …
2:57 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) created by Nicklas Nordborg
A predefined protocol type is a protocol type which has a system ID. …
2:47 PM Changeset [3824] by Nicklas Nordborg
Fixes #802: Migration should attach data files to array design and raw …
2:47 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) closed by Nicklas Nordborg
fixed: (In [3824]) Fixes #802: Migration should attach data files to array …
1:46 PM Changeset [3823] by Jari Häkkinen
Fixed spelling on the word 'everything'.
12:59 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) updated by Nicklas Nordborg
Status, Owner changed
12:27 PM Changeset [3822] by Nicklas Nordborg
Fixes #801: Code for the "Recently viewed items" menu is unstable when …
12:27 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) closed by Nicklas Nordborg
fixed: (In [3822]) Fixes #801: Code for the "Recently viewed items" menu is …
12:10 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) created by Nicklas Nordborg
Depends on #721. This information has not been possible to transfer to …
12:08 PM Ticket #492 (Web services) updated by base
contrinuation == continuation?
12:07 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) updated by Nicklas Nordborg
Status changed
12:04 PM Changeset [3821] by Nicklas Nordborg
Delete filedb branch since it has now been merged into the trunk
12:03 PM Changeset [3820] by Nicklas Nordborg
Merged branches/filedb into trunk.
11:30 AM Changeset [3819] by Nicklas Nordborg
Merged log:trunk#3795:3815 into filedb branch
11:14 AM Changeset [3818] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …
11:14 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3818]) References #721: Store data in files instead of in the …

Oct 11, 2007:

7:32 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) created by Nicklas Nordborg
I have the following setup: […] Without changing anything, today …
3:38 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3817]) References #721: Store data in files instead of in the …
3:38 PM Changeset [3817] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …

Oct 10, 2007:

7:24 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by Nicklas Nordborg
Is this the only thing that can be different in Illumina files? Is …
5:32 PM illumina_tabdelim_example.txt attached to Ticket #800 by base
Example of a Illumina data file with tab as delimeter.
5:32 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) created by base
My Illumina files are not comma separted but tab separeted. Can you …
4:48 PM Changeset [3816] by Martin Svensson
References #492 Start working on services for BioAssaySets and added a …
4:48 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3816]) References #492 Start working on services for BioAssaySets
2:58 PM Changeset [3815] by Martin Svensson
Fixes #799. The same bug was found when BASE tries to look in the …
2:58 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) closed by Martin Svensson
fixed: (In [3815]) Fixes #799. The same bug was found when BASE tries to look …
2:57 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3814]) References #721: Store data in files instead of in the …
2:57 PM Changeset [3814] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …
2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) updated by Martin Svensson
Status changed
2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) created by Martin Svensson
1:44 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3813]) References #492 -Made it possible to send restrictions …
1:44 PM Changeset [3813] by Martin Svensson
References #492 -Made it possible to send restrictions and …
11:46 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3812]) References #721: Store data in files instead of in the …
11:46 AM Changeset [3812] by Nicklas Nordborg
References #721: Store data in files instead of in the database * …

Oct 9, 2007:

7:30 PM Ticket #791 (Plug-in execution time estimates) updated by Nicklas Nordborg
Description changed
7:17 PM Ticket #636 (Kill a running job) updated by Nicklas Nordborg
Description changed
7:13 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) closed by Nicklas Nordborg
duplicate: Duplicate of #636.
4:26 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) updated by Jari Häkkinen
Now there is an error message saying something about interupt: […]
4:21 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) created by Jari Häkkinen
2:22 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by Nicklas Nordborg
Status, Owner changed
The tool can be used by: […] It takes some time to execute. I had …
2:15 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by Nicklas Nordborg
(In [3811]) References #796: Don't create indexes on primary key …
2:15 PM Changeset [3811] by Nicklas Nordborg
References #796: Don't create indexes on primary key columns for …
12:06 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by Nicklas Nordborg
(In [3810]) References #796: Don't create indexes on primary key …
12:06 PM Changeset [3810] by Nicklas Nordborg
References #796: Don't create indexes on primary key columns for …
9:51 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Description changed
9:47 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) created by Nicklas Nordborg
The performance tests (#294) shows that the LOWESS plug-in has bad …
9:38 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) created by Nicklas Nordborg
The performance testing (#294) discovered that a lot of indexes are …
9:08 AM perftest.txt attached to Ticket #294 by Nicklas Nordborg
Test results when running with/without index on primary key columns
9:06 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
I made some tests at home and discovered the same pattern, but I also …
9:00 AM BASE2_prestanda_skalning.png attached to Ticket #294 by Nicklas Nordborg
BASE 2 performance with respect to number of bioassays
9:00 AM BASE1_prestanda_skalning.png attached to Ticket #294 by Nicklas Nordborg
BASE 1 performance with respect to number of bioassays
8:55 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Priority, Status, Description, Owner, Milestone changed
Johan V-C has done some interesting test with the following plug-ins: …

Oct 8, 2007:

12:17 PM Changeset [3809] by Nicklas Nordborg
Fixes #793: Job agent get logged out when waiting for a job to finish …
12:17 PM Ticket #793 (Job agent get logged out when waiting for a job to finish) closed by Nicklas Nordborg
fixed: (In [3809]) Fixes #793: Job agent get logged out when waiting for a …
11:25 AM Ticket #794 (Long query may cause session to timeout) closed by Nicklas Nordborg
fixed: (In [3808]) Fixes #794: Long query may cause session to timeout
11:25 AM Changeset [3808] by Nicklas Nordborg
Fixes #794: Long query may cause session to timeout
10:00 AM Ticket #794 (Long query may cause session to timeout) updated by Nicklas Nordborg
Owner, Status changed
7:49 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) created by Nicklas Nordborg
I'm running base-2.4.2 on tomcat 6.0.14. I'm running a base1 plugin. …
3:50 AM ReleaseProcedure edited by Peter Johansson
fixed typo (diff)

Oct 5, 2007:

3:36 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3807]) References #721: Most things for attaching files to rw …
3:36 PM Changeset [3807] by Nicklas Nordborg
References #721: Most things for attaching files to rw bioassays are …
1:12 PM Changeset [3806] by Jari Häkkinen
Fixed typo.

Oct 4, 2007:

4:33 PM Changeset [3805] by Martin Svensson
References #492 Added a basic support for includes in queries and …
4:33 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3805]) References #492 Added a basic support for includes in …
2:25 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3804]) References #721: Most things for attaching files to array …
2:25 PM Changeset [3804] by Nicklas Nordborg
References #721: Most things for attaching files to array designs are …

Oct 3, 2007:

4:33 PM Ticket #492 (Web services) updated by Martin Svensson
(In [3803]) References #492 Updated Axis2 from 1.1 to 1.3
4:33 PM Changeset [3803] by Martin Svensson
References #492 Updated Axis2 from 1.1 to 1.3
4:29 PM Ticket #492 (Web services) updated by Martin Svensson
Status, Owner changed
1:58 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3802]) References #721: File validation is now in place. More …
1:58 PM Changeset [3802] by Nicklas Nordborg
References #721: File validation is now in place. More robust code for …
8:46 AM Ticket #794 (Long query may cause session to timeout) created by Nicklas Nordborg
If a client application executes a query that takes a long time …

Oct 2, 2007:

7:28 PM Ticket #492 (Web services) updated by Nicklas Nordborg
Description changed
5:05 PM Ticket #492 (Web services) updated by Jari Häkkinen
Description changed
9:12 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3801]) References #721: It is now possible to select files for an …
9:12 AM Changeset [3801] by Nicklas Nordborg
References #721: It is now possible to select files for an array design

Oct 1, 2007:

8:02 AM Ticket #793 (Job agent get logged out when waiting for a job to finish) created by Nicklas Nordborg
If a job takes longer time to execute than the setting in …
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