Timeline
Oct 16, 2007:
- 10:23 PM Ticket #804 (Add links to example code in the Plugins section of the documentation) closed by
- worksforme: It is section 23.7: …
- 4:52 PM Changeset [3846] by
- References #492 Copying webservices into trunk
- 4:52 PM Ticket #492 (Web services) updated by
- (In [3846]) References #492 Copying webservices into trunk
- 3:18 PM Ticket #492 (Web services) updated by
- (In [3845]) References #492 Copying webservices into trunk
- 3:18 PM Changeset [3845] by
- References #492 Copying webservices into trunk
- 3:12 PM Ticket #492 (Web services) updated by
- (In [3844]) References #492 Copying webservices into trunk
- 3:12 PM Changeset [3844] by
- References #492 Copying webservices into trunk
- 2:51 PM Changeset [3843] by
- References #492 Copying webservices into trunk
- 2:51 PM Ticket #492 (Web services) updated by
- (In [3843]) References #492 Copying webservices into trunk
- 2:50 PM Ticket #492 (Web services) updated by
- (In [3842]) References #492 Copying webservices into trunk
- 2:50 PM Changeset [3842] by
- References #492 Copying webservices into trunk
- 2:44 PM Changeset [3841] by
- References #492 Copying webservices into trunk
- 2:44 PM Ticket #492 (Web services) updated by
- (In [3841]) References #492 Copying webservices into trunk
- 1:50 PM Changeset [3840] by
- Fixes #667.
- 1:50 PM Ticket #667 (Move ch. 7 to a lower level) closed by
- fixed: (In [3840]) Fixes #667.
- 1:41 PM Changeset [3839] by
- References #492 Updated javadoc
- 1:41 PM Ticket #492 (Web services) updated by
- (In [3839]) References #492 Updated javadoc
- 1:39 PM Ticket #788 (Select project default platforms / variant) updated by
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Status, Owner changed
- 1:38 PM Changeset [3838] by
- Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) closed by
- fixed: (In [3838]) Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) created by
- 11:06 AM Ticket #554 (Write "Core developer reference.") updated by
-
Milestone changed
- 11:06 AM Ticket #552 (Write "API overview" section) updated by
-
Milestone changed
- 11:05 AM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) updated by
-
Milestone changed
- 11:05 AM Ticket #600 (Write "Appendix: Other configuration files") updated by
-
Milestone changed
- 11:05 AM Ticket #599 (Write "Appendix: migrate.properties reference") updated by
-
Milestone changed
- 11:05 AM Ticket #532 (Read "Jobs" section) updated by
-
Milestone changed
- 11:04 AM Ticket #546 (Write "Experiments and analysis" section.) updated by
-
Milestone changed
- 11:04 AM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
-
Milestone changed
- 11:04 AM Ticket #522 (Write "Why use BASE" section) updated by
-
Milestone changed
- 11:01 AM Ticket #738 (Implement file upload as a pure servlet) updated by
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Milestone changed
- 10:59 AM Ticket #436 (Create extension system for the web application) updated by
-
Milestone changed
- 10:58 AM Ticket #717 (Make initdb, updatedb and other scripts accept a username) updated by
-
Milestone changed
- 10:57 AM Ticket #450 (Plugin for importing Imagene raw data) updated by
-
Milestone changed
- 10:55 AM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) updated by
-
Milestone changed
- 10:55 AM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
-
Milestone changed
- 10:52 AM Ticket #425 (Store the character encoding for text files) updated by
-
Milestone changed
Is there a need to fix this ticket. - 10:49 AM Ticket #597 (Read "Appendix: web.xml reference") updated by
-
Milestone changed
- 10:49 AM Ticket #596 (Read "Appendix: raw-data-types.xml reference") updated by
-
Milestone changed
- 10:48 AM Ticket #553 (Read "Javadoc" section) updated by
-
Milestone, Description changed
- 10:43 AM Ticket #804 (Add links to example code in the Plugins section of the documentation) created by
- It may already exist but this needs t be checked.
- 10:40 AM Ticket #730 (Documentation figures should be centered by default) closed by
- worksforme
- 10:39 AM Ticket #621 (Write 'Plate' section) updated by
-
Milestone, Owner changed
Oct 15, 2007:
- 7:43 PM Changeset [3837] by
- No longer implement the FilenameFilter interface since it couldn't be …
- 2:58 PM Changeset [3836] by
- References #492 A BioAssaySet can now be downloaded in MeV-format …
- 2:58 PM Ticket #492 (Web services) updated by
- (In [3836]) References #492 A BioAssaySet can now be downloaded in …
- 2:26 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3835]) References #721. Updated documentation.
- 2:26 PM Changeset [3835] by
- References #721. Updated documentation.
- 1:55 PM Changeset [3834] by
- Export methods that take an OutputStream as a parameter are now public …
- 9:36 AM Changeset [3833] by
- Updated "Development ideas" with information about already implemented …
- 9:25 AM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3832]) References #364. * Test program now looks for the test …
- 9:25 AM Changeset [3832] by
- References #364. * Test program now looks for the test plug-ins: …
- 8:27 AM Changeset [3831] by
- References #492 Updated copyright statement
- 8:27 AM Ticket #492 (Web services) updated by
- (In [3831]) References #492 Updated copyright statement
Oct 13, 2007:
- 12:48 AM Changeset [3830] by
- Adding files that was not merged from trunk previously.
Oct 12, 2007:
- 11:08 PM Changeset [3829] by
- Fixing copyright statement.
- 11:07 PM Changeset [3828] by
- Fixing svn properties and eol characters.
- 9:04 PM Changeset [3827] by
- Merged log:trunk#3795:3824 into webservices branch.
- 4:09 PM Ticket #492 (Web services) updated by
- (In [3826]) References #492 Extended the services for bioassaysets. A …
- 4:09 PM Changeset [3826] by
- References #492 Extended the services for bioassaysets. A download …
- 3:06 PM Changeset [3825] by
- Fixes #803: Experiment overview is broken if protocols with …
- 3:06 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) closed by
- fixed: (In [3825]) Fixes #803: Experiment overview is broken if protocols …
- 2:57 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) created by
- A predefined protocol type is a protocol type which has a system ID. …
- 2:47 PM Changeset [3824] by
- Fixes #802: Migration should attach data files to array design and raw …
- 2:47 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) closed by
- fixed: (In [3824]) Fixes #802: Migration should attach data files to array …
- 1:46 PM Changeset [3823] by
- Fixed spelling on the word 'everything'.
- 12:59 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) updated by
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Owner, Status changed
- 12:27 PM Changeset [3822] by
- Fixes #801: Code for the "Recently viewed items" menu is unstable when …
- 12:27 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) closed by
- fixed: (In [3822]) Fixes #801: Code for the "Recently viewed items" menu is …
- 12:10 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) created by
- Depends on #721. This information has not been possible to transfer to …
- 12:08 PM Ticket #492 (Web services) updated by
- contrinuation == continuation?
- 12:07 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) updated by
-
Status changed
- 12:04 PM Changeset [3821] by
- Delete filedb branch since it has now been merged into the trunk
- 12:03 PM Changeset [3820] by
- Merged branches/filedb into trunk.
- 11:30 AM Changeset [3819] by
- Merged log:trunk#3795:3815 into filedb branch
- 11:14 AM Changeset [3818] by
- References #721: Store data in files instead of in the database * …
- 11:14 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3818]) References #721: Store data in files instead of in the …
Oct 11, 2007:
- 7:32 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) created by
- I have the following setup: […] Without changing anything, today …
- 3:38 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3817]) References #721: Store data in files instead of in the …
- 3:38 PM Changeset [3817] by
- References #721: Store data in files instead of in the database * …
Oct 10, 2007:
- 7:24 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) updated by
- Is this the only thing that can be different in Illumina files? Is …
- 5:32 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) created by
- My Illumina files are not comma separted but tab separeted. Can you …
- 4:48 PM Changeset [3816] by
- References #492 Start working on services for BioAssaySets and added a …
- 4:48 PM Ticket #492 (Web services) updated by
- (In [3816]) References #492 Start working on services for BioAssaySets …
- 2:58 PM Changeset [3815] by
- Fixes #799. The same bug was found when BASE tries to look in the …
- 2:58 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) closed by
- fixed: (In [3815]) Fixes #799. The same bug was found when BASE tries to look …
- 2:57 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3814]) References #721: Store data in files instead of in the …
- 2:57 PM Changeset [3814] by
- References #721: Store data in files instead of in the database * …
- 2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) updated by
-
Status changed
- 2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) created by
- 1:44 PM Ticket #492 (Web services) updated by
- (In [3813]) References #492 -Made it possible to send restrictions …
- 1:44 PM Changeset [3813] by
- References #492 -Made it possible to send restrictions and …
- 11:46 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3812]) References #721: Store data in files instead of in the …
- 11:46 AM Changeset [3812] by
- References #721: Store data in files instead of in the database * …
Oct 9, 2007:
- 7:30 PM Ticket #791 (Plug-in execution time estimates) updated by
-
Description changed
- 7:17 PM Ticket #636 (Kill a running job) updated by
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Description changed
- 7:13 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) closed by
- duplicate: Duplicate of #636.
- 4:26 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) updated by
- Now there is an error message saying something about interupt: […]
- 4:21 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) created by
- 2:22 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by
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Status, Owner changed
The tool can be used by: […] It takes some time to execute. I had … - 2:15 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by
- (In [3811]) References #796: Don't create indexes on primary key …
- 2:15 PM Changeset [3811] by
- References #796: Don't create indexes on primary key columns for …
- 12:06 PM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) updated by
- (In [3810]) References #796: Don't create indexes on primary key …
- 12:06 PM Changeset [3810] by
- References #796: Don't create indexes on primary key columns for …
- 9:51 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
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Description changed
- 9:47 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) created by
- The performance tests (#294) shows that the LOWESS plug-in has bad …
- 9:38 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) created by
- The performance testing (#294) discovered that a lot of indexes are …
- 9:06 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
- I made some tests at home and discovered the same pattern, but I also …
- 8:55 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
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Status, Priority, Description, Owner, Milestone changed
Johan V-C has done some interesting test with the following plug-ins: …
Oct 8, 2007:
- 12:17 PM Changeset [3809] by
- Fixes #793: Job agent get logged out when waiting for a job to finish …
- 12:17 PM Ticket #793 (Job agent get logged out when waiting for a job to finish) closed by
- fixed: (In [3809]) Fixes #793: Job agent get logged out when waiting for a …
- 11:25 AM Ticket #794 (Long query may cause session to timeout) closed by
- fixed: (In [3808]) Fixes #794: Long query may cause session to timeout
- 11:25 AM Changeset [3808] by
- Fixes #794: Long query may cause session to timeout
- 10:00 AM Ticket #794 (Long query may cause session to timeout) updated by
-
Status, Owner changed
- 7:49 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) created by
- I'm running base-2.4.2 on tomcat 6.0.14. I'm running a base1 plugin. …
- 3:50 AM ReleaseProcedure edited by
- fixed typo (diff)
Oct 5, 2007:
- 3:36 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3807]) References #721: Most things for attaching files to rw …
- 3:36 PM Changeset [3807] by
- References #721: Most things for attaching files to rw bioassays are …
- 1:12 PM Changeset [3806] by
- Fixed typo.
Oct 4, 2007:
- 4:33 PM Changeset [3805] by
- References #492 Added a basic support for includes in queries and …
- 4:33 PM Ticket #492 (Web services) updated by
- (In [3805]) References #492 Added a basic support for includes in …
- 2:25 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3804]) References #721: Most things for attaching files to array …
- 2:25 PM Changeset [3804] by
- References #721: Most things for attaching files to array designs are …
Oct 3, 2007:
- 4:33 PM Ticket #492 (Web services) updated by
- (In [3803]) References #492 Updated Axis2 from 1.1 to 1.3
- 4:33 PM Changeset [3803] by
- References #492 Updated Axis2 from 1.1 to 1.3
- 4:29 PM Ticket #492 (Web services) updated by
-
Status, Owner changed
- 1:58 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3802]) References #721: File validation is now in place. More …
- 1:58 PM Changeset [3802] by
- References #721: File validation is now in place. More robust code for …
- 8:46 AM Ticket #794 (Long query may cause session to timeout) created by
- If a client application executes a query that takes a long time …
Oct 2, 2007:
- 7:28 PM Ticket #492 (Web services) updated by
-
Description changed
- 5:05 PM Ticket #492 (Web services) updated by
-
Description changed
- 9:12 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3801]) References #721: It is now possible to select files for an …
- 9:12 AM Changeset [3801] by
- References #721: It is now possible to select files for an array design
Oct 1, 2007:
- 8:02 AM Ticket #793 (Job agent get logged out when waiting for a job to finish) created by
- If a job takes longer time to execute than the setting in …
Sep 28, 2007:
- 8:11 PM Ticket #792 (Add support for units to annotation values) created by
- See …
- 3:16 PM Ticket #791 (Plug-in execution time estimates) created by
- Plug-ins should be better in estimating the expected execution time. …
- 3:14 PM Ticket #790 (Job slot status information on job agent view) created by
- It would be nice to see the jobs slot utilization in the job agent …
- 1:58 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) created by
- Depends on #721 and #788. The experiment overview should check: * …
- 1:54 PM Ticket #788 (Select project default platforms / variant) created by
- Depends on #721. The list of items selected as project default items …
- 1:47 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3800]) References #721: It is now possible to edit platforms and …
- 1:47 PM Changeset [3800] by
- References #721: It is now possible to edit platforms and data file …
- 9:50 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3799]) References #721: Added platform variants to web gui.
- 9:50 AM Changeset [3799] by
- References #721: Added platform variants to web gui.
- 8:45 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3798]) References #721: Changed systemId to externalId in JSP as well
- 8:45 AM Changeset [3798] by
- References #721: Changed systemId to externalId in JSP as well
- 8:35 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3797]) References #721: Changes systemId to externalId
- 8:35 AM Changeset [3797] by
- References #721: Changes systemId to externalId
Sep 27, 2007:
- 10:05 PM Changeset [3796] by
- Merged log:trunk#3775:3995 into filedb branch
- 9:52 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3795]) References #721: Updated documentation to reflect changes …
- 9:52 PM Changeset [3795] by
- References #721: Updated documentation to reflect changes in the code …
- 9:47 PM Ticket #524 (Read "Overview of user documentation" section) updated by
- (In [3794]) References #524. Fixed some issues in the text, and a …
- 9:47 PM Changeset [3794] by
- References #524. Fixed some issues in the text, and a build problem on …
- 1:38 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3793]) References #721: Many core classes in place. Work has …
- 1:38 PM Changeset [3793] by
- References #721: Many core classes in place. Work has started on the …
- 12:57 PM Ticket #787 (Add functions for within Bioassays and across Bioassayset in expressions) created by
- It would be useful to have the possibility to use some standard …
- 9:58 AM Ticket #560 (Deleting reporters) closed by
- fixed: (In [3792]) Fixes #560 Deleting reporters
- 9:58 AM Changeset [3792] by
- Fixes #560 Deleting reporters
Sep 26, 2007:
- 1:57 PM Ticket #560 (Deleting reporters) updated by
-
Status, Owner changed
- 1:37 PM Ticket #524 (Read "Overview of user documentation" section) updated by
-
Summary changed
- 1:33 PM Ticket #665 (Links in the documentation) closed by
- fixed: (In [3791]) Fixes #665 Links in the documentation
- 1:33 PM Changeset [3791] by
- Fixes #665 Links in the documentation
- 1:20 PM Ticket #665 (Links in the documentation) updated by
- The misuse of links in the documentation is not fixed with this …
- 11:27 AM Ticket #524 (Read "Overview of user documentation" section) updated by
-
Summary, Priority, Owner, Status changed
- 11:24 AM Changeset [3790] by
- References #524 Some small changes to finish the writing.
- 11:24 AM Ticket #524 (Read "Overview of user documentation" section) updated by
- (In [3790]) References #524 Some small changes to finish the writing.
- 10:54 AM Changeset [3789] by
- Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
- 8:47 AM Ticket #665 (Links in the documentation) updated by
- The first issue is occurring when a link-tag is used instead of …
- 7:35 AM Ticket #665 (Links in the documentation) updated by
-
Owner, Status changed
- 12:14 AM DownloadPage edited by
- Releasing 2.4.3 (diff)
- 12:04 AM Changeset [3788] by
- Changes for future release 2.4.4
- 12:02 AM Changeset [3787] by
- Tagging release 2.4.3
- 12:02 AM Milestone BASE 2.4.3 completed
- Revision Log: log:branches/2.4-stable@3772:3786
Sep 25, 2007:
- 11:56 PM Changeset [3786] by
- Preparing release 2.4.3
- 4:56 PM Changeset [3785] by
- creates the new BioAssay set the same way in the assays and spots section
- 3:08 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- fixed: (In [3784]) Fixes #655: Plugins -> defintions fails with 'illegal …
- 3:08 PM Changeset [3784] by
- Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
- 2:30 PM Changeset [3783] by
- Merged changes from trunk between revisions 3758:3775 Minor changes in …
- 2:28 PM Changeset [3782] by
- References #524 Mostly done, will read it one more time and correct …
- 2:28 PM Ticket #524 (Read "Overview of user documentation" section) updated by
- (In [3782]) References #524 Mostly done, will read it one more time …
- 1:47 PM Changeset [3781] by
- Fixes #780: ParameterValuesImpl doesn't implement ParameterValues as …
- 1:47 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) closed by
- fixed: (In [3781]) Fixes #780: ParameterValuesImpl doesn't implement …
- 1:21 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) updated by
-
Status, Owner changed
- 1:20 PM Changeset [3780] by
- Fixes #784: PackedFileExporter chews first character from file and …
- 1:20 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) closed by
- fixed: (In [3780]) Fixes #784: PackedFileExporter chews first character from …
- 1:09 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) updated by
-
Owner, Status changed
- 12:35 PM Ticket #775 (Refresh redirects) updated by
- It has to do with which tab that was visible at first, but it may not …
- 12:17 PM Changeset [3779] by
- Fixes #776: ParameterType.validate should include parameter name in …
- 12:17 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) closed by
- fixed: (In [3779]) Fixes #776: ParameterType.validate should include …
- 12:11 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) closed by
- fixed: (In [3778]) Fixes #786: Path constructor doesn't validate the filename …
- 12:11 PM Changeset [3778] by
- Fixes #786: Path constructor doesn't validate the filename part of the path
- 12:03 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) created by
- It happily accepts a path like: /dir/abc<>def Creating a File item …
- 11:56 AM Ticket #775 (Refresh redirects) updated by
- The first visible tab was the properties tab. It works when I switch …
- 11:35 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) closed by
- fixed: (In [3777]) Fixes #785: ItemContext.configureQuery() should use fetch …
- 11:35 AM Changeset [3777] by
- Fixes #785: ItemContext.configureQuery() should use fetch join if a …
- 11:33 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) closed by
- fixed: Can't find any more places. The problem found is now part of ticket #785.
- 11:32 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) created by
- Some databases, ie. Postgres, requires that a column in the ORDER BY …
- 11:28 AM Changeset [3776] by
- Fixes #781: AnnotationSet.getAllInheritedAnnotations() may generate …
- 11:28 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) closed by
- fixed: (In [3776]) Fixes #781: AnnotationSet.getAllInheritedAnnotations() may …
- 11:12 AM Changeset [3775] by
- Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
- 9:58 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) updated by
- I have found that BioMaterialEvent.getQuery() also creates a DISTINCT …
- 9:35 AM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) closed by
- fixed: (In [3774]) Fixes #782: Create test case that calls …
- 9:35 AM Changeset [3774] by
- Fixes #782: Create test case that calls …
- 9:34 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) updated by
-
Owner, Status changed
- 9:34 AM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) updated by
-
Owner, Status changed
- 9:16 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) updated by
- I have just verified that option 2 with a fetch join seems to work. It …
- 9:07 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) updated by
-
Owner, Status changed
- 7:55 AM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) updated by
-
Milestone changed
- 7:55 AM Ticket #776 (ParameterType.validate should include parameter name in error messages) updated by
-
Milestone changed
- 7:54 AM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) updated by
-
Milestone changed
- 7:54 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) updated by
-
Priority, Milestone changed
- 7:53 AM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) updated by
-
Milestone changed
- 7:53 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) updated by
-
Milestone changed
- 1:02 AM WikiStart edited by
- Fixed broken link. (diff)
- 12:13 AM Changeset [3773] by
- Merged patch release 2.4.2 to the webservices bracnh. Delta 2.4.2 - 2.4.1
Sep 24, 2007:
- 11:09 PM DownloadPage edited by
- Releasing 2.4.2 (diff)
- 11:01 PM Changeset [3772] by
- Changes for future release 2.4.3
- 10:51 PM Changeset [3771] by
- Tagging release 2.4.2
- 10:51 PM Milestone BASE 2.4.2 completed
- Revision Log: log:branches/2.4-stable@3723:3770
- 10:45 PM Changeset [3770] by
- Preparing release 2.4.2
- 10:42 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) created by
- If trying to download files and directories that are located in the …
- 10:33 PM Ticket #783 (Check the source for other places affected by the Postgres problem ...) updated by
-
Description changed
- 10:33 PM Ticket #783 (Check the source for other places affected by the Postgres problem ...) updated by
-
Description changed
- 10:33 PM Ticket #783 (Check the source for other places affected by the Postgres problem ...) created by
- Since it only affects distinct queries we can use Eclipse to find all …
- 10:31 PM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) created by
- See #781 for details about why such a test is needed.
- 10:26 PM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) created by
-
On the
/common/annotations/list_annotations.jspthe … - 6:32 PM Ticket #777 (Take me back to the start) updated by
- I found a bug in the core which results in this user-unfriendly …
- 6:30 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) created by
- The ParameterValuesImpl.setValue() and setValues() method doesn't …
- 5:20 PM Ticket #779 (Improve validation of job parameters in Base1PluginExecuter) created by
- The job parameters in the Base1PluginExecuter should be validated at …
- 5:04 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) updated by
-
Component, Priority, Summary changed
It is the responsibility of the plug-in to validate the parameters and … - 4:55 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) updated by
-
Milestone changed
- 4:54 PM Ticket #778 (Add expression to formula) updated by
-
Milestone changed
- 4:53 PM Ticket #775 (Refresh redirects) updated by
-
Milestone changed
- 4:53 PM Ticket #777 (Take me back to the start) closed by
- invalid: It is the responsibility of the plug-in to validate the parameters and …
- 4:49 PM Ticket #778 (Add expression to formula) created by
- When creating an expression to a formula using the the Expression …
- 4:34 PM Ticket #777 (Take me back to the start) created by
- If I have made en error when adding values to the plugin job …
- 4:25 PM Ticket #775 (Refresh redirects) updated by
-
Milestone changed
- 4:25 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) created by
- The exception message shown when you have entered wrong values in the …
- 3:58 PM Changeset [3769] by
- Fixes #770 Filter plug-in is lacking permission to read reporter lists
- 3:58 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) closed by
- fixed: (In [3769]) Fixes #770 Filter plug-in is lacking permission to read …
- 3:40 PM Ticket #775 (Refresh redirects) updated by
- I don't there is an easy solution for this and the same "problem" is …
- 3:11 PM Ticket #775 (Refresh redirects) created by
- From the experiment analyse page. I press 'Overview plots' and watch …
- 2:40 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
-
Status, Owner changed
- 2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) closed by
- fixed: (In [3768]) Fixes #774 Export selected items doesn't work in TableExporter
- 2:39 PM Changeset [3768] by
- Fixes #774 Export selected items doesn't work in TableExporter
- 2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) created by
- The export of selected items from a table only gives a nullpointer …
- 1:31 PM Ticket #772 (Exporting features from Array designs) closed by
- fixed: (In [3767]) Fixes #772 Exporting features from Array designs
- 1:31 PM Changeset [3767] by
- Fixes #772 Exporting features from Array designs
- 10:58 AM Ticket #772 (Exporting features from Array designs) updated by
-
Owner, Status changed
Sep 21, 2007:
- 4:35 PM Changeset [3766] by
- Reference #524 A start
- 3:41 PM Changeset [3765] by
- References #364, Correct inconsistent variable/property 'plugin.dir' …
- 3:41 PM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3765]) References #364, Correct inconsistent variable/property …
- 2:51 PM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3764]) References #721. Added data layer classes and some core …
- 2:51 PM Changeset [3764] by
- References #721. Added data layer classes and some core classes.
- 2:44 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) reopened by
- To display the experimental factors in a similar way as in the …
- 2:35 PM Changeset [3763] by
- References #364, Added instructions how to make ant put …
- 2:35 PM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3763]) References #364, Added instructions how to make ant put …
- 1:34 PM Ticket #772 (Exporting features from Array designs) updated by
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Milestone, Component changed
It is probably a bug. - 1:19 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
- Inherited annotations can't be viewed in the list views, only …
- 12:38 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) updated by
- yes that was the problem. Sorry! Bad typo.
- 10:47 AM Ticket #773 (Filter reporter table using array design) created by
- It would be useful to filter reporter table using Array design. This …
- 10:39 AM Ticket #772 (Exporting features from Array designs) created by
- When trying to export features from an array design (from the features …
- 10:27 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
- Working on the onk installation BASE 2.4.1 (build #3722; schema #40) I …
- 10:20 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
- I agree that it is logical to have the filter plugin configured …
- 10:01 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
- Shouldn't the JEP filter plugin come properly configured out-of-the-box?
- 9:49 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
- I can verify that the plugin lacked permission to read reporter list. …
- 9:32 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by
- In which version?
- 9:31 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
- Browsing through the jobs I notice that this is the problem occurs …
- 9:18 AM Tickets #411,746,554 batch updated by
- (In [3762]) References #554, #746 and fixes #411. File and directories …
- 9:18 AM Changeset [3762] by
- References #554, #746 and fixes #411. File and directories diagram …
- 8:36 AM Ticket #411 (Extending compressed file support and storage) updated by
-
Description changed
- 8:15 AM Ticket #721 (Store data in files instead of in the database) updated by
-
Description changed
- 7:55 AM Ticket #721 (Store data in files instead of in the database) updated by
-
Description changed
Sep 20, 2007:
- 11:12 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by
-
Summary, Milestone, Component changed
I think it is the plug-in you are running that lacks permission to the … - 11:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by
- worksforme: This has already been implemented.
- 8:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) created by
- When viewing the bioassay table in a Bioassayset, allow the user to …
- 7:49 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) created by
- Trying to run a filter that use my own Reporter list. Get error: …
- 4:57 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) closed by
- invalid: The first problem is related to ticket #655 which partly will be fixed …
- 4:37 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) created by
- Went to Administrate -> Plugins > Definitions Got this non fatal …
- 3:56 PM Ticket #524 (Read "Overview of user documentation" section) updated by
-
Description changed
- 3:47 PM Changeset [3761] by
- Fixes #689 Increase 99 hits per page limit (list views). The limit is …
- 3:47 PM Ticket #689 (Increase 99 hits per page limit (list views)) closed by
- fixed: (In [3761]) Fixes #689 Increase 99 hits per page limit (list views). …
- 2:56 PM Ticket #689 (Increase 99 hits per page limit (list views)) updated by
-
Owner, Status changed
- 2:27 PM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) closed by
- wontfix: I just realized that once ticket #721 is fixed this can't be done.
- 1:35 PM Changeset [3760] by
- Fixes #364, Uses the existing JarClassLoader, when reading/loading …
- 1:35 PM Ticket #364 (Support for automatic install of non-core plugins) closed by
- fixed: (In [3760]) Fixes #364, Uses the existing JarClassLoader, when …
- 11:24 AM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3759]) References #364, documentation
- 11:23 AM Changeset [3759] by
- References #364, documentation
- 10:53 AM Ticket #621 (Write 'Plate' section) updated by
-
Component changed
- 10:39 AM Ticket #768 (Add information about running reporter update after migration if needed) updated by
-
Owner, Status changed
- 10:39 AM Ticket #768 (Add information about running reporter update after migration if needed) created by
- 9:54 AM Changeset [3758] by
- Branch for working with ticket #721: Store data in files instead of in …
- 9:50 AM Ticket #721 (Store data in files instead of in the database) updated by
- (In [3757]) References #721: Store data in files instead of in the …
- 9:50 AM Changeset [3757] by
- References #721: Store data in files instead of in the database …
- 9:12 AM Changeset [3756] by
- Allow 'entrytbl' tags to have a 'frame' attribute in the same way as …
Sep 19, 2007:
- 2:36 PM Changeset [3755] by
- References #364, documentation
- 2:36 PM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3755]) References #364, documentation
- 1:39 PM Ticket #767 (Migration fails if more than one user has the same quota) closed by
- fixed: (In [3754]) Fixes #767: Migration fails if more than one user has the …
- 1:38 PM Changeset [3754] by
- Fixes #767: Migration fails if more than one user has the same quota
- 1:25 PM Ticket #767 (Migration fails if more than one user has the same quota) updated by
-
Status changed
- 1:25 PM Ticket #767 (Migration fails if more than one user has the same quota) created by
- The stacktrace is: […] The migration will create new quota items, …
Sep 18, 2007:
- 3:47 PM Ticket #364 (Support for automatic install of non-core plugins) updated by
- (In [3753]) References #364, documentation
- 3:47 PM Changeset [3753] by
- References #364, documentation
- 1:35 PM Ticket #524 (Read "Overview of user documentation" section) updated by
-
Owner, Status changed
- 10:17 AM Ticket #732 (Link to basehacks has disappeard) closed by
- fixed: The information was already in 3rd-party-components.txt. This …
- 10:13 AM Changeset [3752] by
- Addresses #732.
- 10:13 AM Ticket #732 (Link to basehacks has disappeard) updated by
- (In [3752]) Addresses #732.
- 10:06 AM Ticket #617 (Write plate management in array LIMS) updated by
-
Owner, Status changed
- 9:45 AM ReleaseProcedure edited by
- Added item about updating link to latest stable BASE docs. (diff)
- 9:37 AM Changeset [3751] by
- References #411. Migration should now automatically compress files …
- 9:37 AM Ticket #411 (Extending compressed file support and storage) updated by
- (In [3751]) References #411. Migration should now automatically …
- 9:28 AM Ticket #411 (Extending compressed file support and storage) updated by
- (In [3750]) References #411. Compiled AffxFusion.jar with target="1.5" …
- 9:28 AM Changeset [3750] by
- References #411. Compiled AffxFusion.jar with target="1.5" to make it …
- 9:21 AM Ticket #761 (Not equal in filter doesn't support wildcards) closed by
- fixed: (In [3749]) Fixes #761: Not equal in filter doesn't support wildcards
- 9:21 AM Changeset [3749] by
- Fixes #761: Not equal in filter doesn't support wildcards
- 9:02 AM Ticket #761 (Not equal in filter doesn't support wildcards) updated by
-
Status changed
- 9:02 AM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) closed by
- fixed: (In [3748]) Fixes #765: Deleting an Affymetrix raw bioassay from …
- 9:02 AM Changeset [3748] by
- Fixes #765: Deleting an Affymetrix raw bioassay from trashcan …
- 8:59 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) closed by
- fixed: (In [3747]) Fixes #766: Batchers may be registered with a DbControl …
- 8:59 AM Changeset [3747] by
- Fixes #766: Batchers may be registered with a DbControl even if …
- 8:33 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) updated by
-
Status, Owner changed
- 8:33 AM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) updated by
-
Status, Owner changed
See ticket #766 for more info about what is going on here. - 8:32 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) created by
- This issue is related to #765. What is happening there is that a …
Sep 17, 2007:
- 8:14 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) updated by
-
Component, Milestone, Priority changed
- 8:13 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) created by
- Dominic Oyeniran wrote: > I am experiencing the problem with deletion …
- 8:08 PM Ticket #764 (Selecting Bioassays in the plot tool.) updated by
-
Type changed
- 3:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
-
Milestone changed
- 3:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
- (In [3746]) References #655: Plugins -> defintions fails with 'illegal …
- 3:14 PM Changeset [3746] by
- References #655: Plugins -> defintions fails with 'illegal attempt to …
- 3:10 PM Ticket #751 (Fail to delete item from table view) updated by
- This might be a problem due to very heavy load on mysql/tomcat during …
- 3:07 PM Changeset [3745] by
- Fixes #752: Configuration parameters not preserved when Plugin …
- 3:07 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) closed by
- fixed: (In [3745]) Fixes #752: Configuration parameters not preserved when …
- 3:07 PM Ticket #764 (Selecting Bioassays in the plot tool.) created by
- Suggested enhancements for plot functionality would enable useful plot …
- 3:04 PM Changeset [3744] by
- Fixes #763
- 3:04 PM Ticket #763 (Unresolved id:s in documentation) closed by
- fixed: (In [3744]) Fixes #763
- 3:03 PM Ticket #763 (Unresolved id:s in documentation) reopened by
- The links don't work to terms inside varlistentry
- 2:53 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by
-
Status, Owner changed
- 2:47 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by
-
Version changed
* Create a plugin configuration * Edit your configuration * Copy … - 2:47 PM Changeset [3743] by
- Fixes #753: NullPointerException in plugin configuration list
- 2:47 PM Ticket #753 (NullPointerException in plugin configuration list) closed by
- fixed: (In [3743]) Fixes #753: NullPointerException in plugin configuration list
- 2:46 PM Ticket #753 (NullPointerException in plugin configuration list) updated by
- The same problem also appears on the single-item view page and on the …
- 2:16 PM RobotsTxt edited by
- (diff)
- 2:08 PM Ticket #751 (Fail to delete item from table view) updated by
-
Milestone changed
- 2:06 PM Ticket #749 (TAR files with long files names are not supported) updated by
-
Milestone changed
We are waiting for apache project to finish their code. - 2:05 PM Ticket #742 (Refactor BioAssaySetExporter) updated by
-
Milestone changed
- 2:05 PM Ticket #741 (Refactor Base1PluginExecuter) updated by
-
Milestone changed
- 2:04 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by
-
Milestone changed
- 2:03 PM Ticket #748 (MeV application fail to load data) updated by
-
Owner, Status, Milestone changed
- 2:02 PM Ticket #738 (Implement file upload as a pure servlet) updated by
-
Milestone changed
- 2:02 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) updated by
-
Milestone changed
- 2:01 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) closed by
- duplicate: Duplicate of ticket:753
- 1:59 PM Ticket #729 (./jobagent.sh should accept command `status`) updated by
-
Milestone changed
- 1:49 PM Ticket #732 (Link to basehacks has disappeard) updated by
-
Status changed
- 1:49 PM Ticket #185 (Refactor the Item class and DbControl and more...) updated by
-
Priority changed
- 1:40 PM DeveloperInformation edited by
- (diff)
- 1:29 PM Ticket #753 (NullPointerException in plugin configuration list) updated by
-
Status, Description, Summary changed
- 1:25 PM WikiStart edited by
- Only show latest docs on first page. (diff)
- 1:16 PM Changeset [3742] by
- Fixes #735: PermissionDeniedException on array design list view
- 1:16 PM Ticket #735 (PermissionDeniedException on array design list view) closed by
- fixed: (In [3742]) Fixes #735: PermissionDeniedException on array design list view
- 1:16 PM Ticket #735 (PermissionDeniedException on array design list view) updated by
-
Component changed
- 1:16 PM Ticket #763 (Unresolved id:s in documentation) closed by
- wontfix: Seems to be some problem in the pdf-generator because the ids exists …
- 1:12 PM Ticket #735 (PermissionDeniedException on array design list view) updated by
-
Status, Owner changed
- 1:10 PM Ticket #758 (Store number of features in a database column of ArrayDesign) closed by
- fixed: (In [3741]) Fixes #758: Store number of features in a database column …
- 1:10 PM Changeset [3741] by
- Fixes #758: Store number of features in a database column of ArrayDesign
- 1:09 PM Ticket #763 (Unresolved id:s in documentation) updated by
-
Status changed
- 1:08 PM Ticket #763 (Unresolved id:s in documentation) created by
- There are some complaints about unresolved ids when generating the …
- 12:58 PM Ticket #733 (Add support to select plugin configurations that should be imported) closed by
- fixed: (In [3740]) Fixes #733 Documentation
- 12:58 PM Changeset [3740] by
- Fixes #733 Documentation
- 9:48 AM WikiStart edited by
- Documentation moved somewhat to make place for trunk and latest stable … (diff)
- 9:29 AM Changeset [3739] by
- Removed invalid help info regarding 'ant doc' and 'ant docbook'.
- 9:29 AM Changeset [3738] by
- Removed invalid help info regarding 'ant doc' and 'ant docbook'.
- 9:28 AM Ticket #411 (Extending compressed file support and storage) updated by
- (In [3737]) Added modified AffxFusion?.jar that can read from …
- 9:23 AM Changeset [3737] by
- Added modified AffxFusion.jar that can read from InputStream for some …
- 8:24 AM Ticket #721 (Store data in files instead of in the database) updated by
-
Description changed
Sep 16, 2007:
- 8:09 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by
-
Component, Milestone changed
It would be great to have this functionality. The syntax needs to be … - 7:56 PM Ticket #761 (Not equal in filter doesn't support wildcards) updated by
-
Component, Summary, Priority, Milestone changed
Well, the filter does work. The problem is that it doesn't support the …
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