Timeline



Sep 28, 2007:

8:11 PM Ticket #792 (Add support for units to annotation values) created by Nicklas Nordborg
See …
3:16 PM Ticket #791 (Plug-in execution time estimates) created by Jari Häkkinen
Plug-ins should be better in estimating the expected execution time. …
3:14 PM Ticket #790 (Job slot status information on job agent view) created by Jari Häkkinen
It would be nice to see the jobs slot utilization in the job agent …
1:58 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) created by Nicklas Nordborg
Depends on #721 and #788. The experiment overview should check: * …
1:54 PM Ticket #788 (Select project default platforms / variant) created by Nicklas Nordborg
Depends on #721. The list of items selected as project default items …
1:47 PM Changeset [3800] by Nicklas Nordborg
References #721: It is now possible to edit platforms and data file …
9:50 AM Changeset [3799] by Nicklas Nordborg
References #721: Added platform variants to web gui.
8:45 AM Changeset [3798] by Nicklas Nordborg
References #721: Changed systemId to externalId in JSP as well
8:35 AM Changeset [3797] by Nicklas Nordborg
References #721: Changes systemId to externalId

Sep 27, 2007:

10:05 PM Changeset [3796] by Nicklas Nordborg
Merged log:trunk#3775:3995 into filedb branch
9:52 PM Changeset [3795] by Nicklas Nordborg
References #721: Updated documentation to reflect changes in the code …
9:47 PM Changeset [3794] by Nicklas Nordborg
References #524. Fixed some issues in the text, and a build problem on …
1:38 PM Changeset [3793] by Nicklas Nordborg
References #721: Many core classes in place. Work has started on the …
12:57 PM Ticket #787 (Add functions for within Bioassays and across Bioassayset in expressions) created by Johan Vallon-Christersson
It would be useful to have the possibility to use some standard …
9:58 AM Ticket #560 (Deleting reporters) closed by Martin Svensson
fixed: (In [3792]) Fixes #560 Deleting reporters
9:58 AM Changeset [3792] by Martin Svensson
Fixes #560 Deleting reporters

Sep 26, 2007:

1:33 PM Ticket #665 (Links in the documentation) closed by Martin Svensson
fixed: (In [3791]) Fixes #665 Links in the documentation
1:33 PM Changeset [3791] by Martin Svensson
Fixes #665 Links in the documentation
11:24 AM Changeset [3790] by Martin Svensson
References #524 Some small changes to finish the writing.
10:54 AM Changeset [3789] by Johan Enell
Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
12:14 AM DownloadPage edited by Jari Häkkinen
Releasing 2.4.3 (diff)
12:04 AM Changeset [3788] by Jari Häkkinen
Changes for future release 2.4.4
12:02 AM Changeset [3787] by Jari Häkkinen
Tagging release 2.4.3
12:02 AM Milestone BASE 2.4.3 completed
Revision Log: log:branches/2.4-stable@3772:3786

Sep 25, 2007:

11:56 PM Changeset [3786] by Jari Häkkinen
Preparing release 2.4.3
4:56 PM Changeset [3785] by Johan Enell
creates the new BioAssay? set the same way in the assays and spots section
3:08 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by Nicklas Nordborg
fixed: (In [3784]) Fixes #655: Plugins -> defintions fails with 'illegal …
3:08 PM Changeset [3784] by Nicklas Nordborg
Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
2:30 PM Changeset [3783] by Nicklas Nordborg
Merged changes from trunk between revisions 3758:3775 Minor changes in …
2:28 PM Changeset [3782] by Martin Svensson
References #524 Mostly done, will read it one more time and correct …
1:47 PM Changeset [3781] by Nicklas Nordborg
Fixes #780: ParameterValuesImpl? doesn't implement ParameterValues? as …
1:47 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) closed by Nicklas Nordborg
fixed: (In [3781]) Fixes #780: ParameterValuesImpl? doesn't implement …
1:20 PM Changeset [3780] by Nicklas Nordborg
Fixes #784: PackedFileExporter? chews first character from file and …
1:20 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) closed by Nicklas Nordborg
fixed: (In [3780]) Fixes #784: PackedFileExporter? chews first character from …
12:17 PM Changeset [3779] by Nicklas Nordborg
Fixes #776: ParameterType?.validate should include parameter name in …
12:17 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) closed by Nicklas Nordborg
fixed: (In [3779]) Fixes #776: ParameterType?.validate should include …
12:11 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) closed by Nicklas Nordborg
fixed: (In [3778]) Fixes #786: Path constructor doesn't validate the filename …
12:11 PM Changeset [3778] by Nicklas Nordborg
Fixes #786: Path constructor doesn't validate the filename part of the path
12:03 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) created by Nicklas Nordborg
It happily accepts a path like: /dir/abc<>def Creating a File item …
11:35 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) closed by Nicklas Nordborg
fixed: (In [3777]) Fixes #785: ItemContext?.configureQuery() should use fetch …
11:35 AM Changeset [3777] by Nicklas Nordborg
Fixes #785: ItemContext?.configureQuery() should use fetch join if a …
11:33 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) closed by Nicklas Nordborg
fixed: Can't find any more places. The problem found is now part of ticket #785.
11:32 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) created by Nicklas Nordborg
Some databases, ie. Postgres, requires that a column in the ORDER BY …
11:28 AM Changeset [3776] by Nicklas Nordborg
Fixes #781: AnnotationSet?.getAllInheritedAnnotations() may generate …
11:28 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) closed by Nicklas Nordborg
fixed: (In [3776]) Fixes #781: AnnotationSet?.getAllInheritedAnnotations() may …
11:12 AM Changeset [3775] by Johan Enell
Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
9:35 AM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) closed by Nicklas Nordborg
fixed: (In [3774]) Fixes #782: Create test case that calls …
9:35 AM Changeset [3774] by Nicklas Nordborg
Fixes #782: Create test case that calls …
1:02 AM WikiStart edited by Jari Häkkinen
Fixed broken link. (diff)
12:13 AM Changeset [3773] by Jari Häkkinen
Merged patch release 2.4.2 to the webservices bracnh. Delta 2.4.2 - 2.4.1

Sep 24, 2007:

11:09 PM DownloadPage edited by Jari Häkkinen
Releasing 2.4.2 (diff)
11:01 PM Changeset [3772] by Jari Häkkinen
Changes for future release 2.4.3
10:51 PM Changeset [3771] by Jari Häkkinen
Tagging release 2.4.2
10:51 PM Milestone BASE 2.4.2 completed
Revision Log: log:branches/2.4-stable@3723:3770
10:45 PM Changeset [3770] by Jari Häkkinen
Preparing release 2.4.2
10:42 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) created by Nicklas Nordborg
If trying to download files and directories that are located in the …
10:33 PM Ticket #783 (Check the source for other places affected by the Postgres problem ...) created by Nicklas Nordborg
Since it only affects distinct queries we can use Eclipse to find all …
10:31 PM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) created by Nicklas Nordborg
See #781 for details about why such a test is needed.
10:26 PM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) created by Nicklas Nordborg
On the /common/annotations/list_annotations.jsp the …
6:30 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) created by Nicklas Nordborg
The ParameterValuesImpl?.setValue() and setValues() method doesn't …
5:20 PM Ticket #779 (Improve validation of job parameters in Base1PluginExecuter) created by Johan Enell
The job parameters in the Base1PluginExecuter should be validated at …
4:53 PM Ticket #777 (Take me back to the start) closed by Nicklas Nordborg
invalid: It is the responsibility of the plug-in to validate the parameters and …
4:49 PM Ticket #778 (Add expression to formula) created by Johan Enell
When creating an expression to a formula using the the Expression …
4:34 PM Ticket #777 (Take me back to the start) created by Johan Enell
If I have made en error when adding values to the plugin job …
4:25 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) created by Johan Enell
The exception message shown when you have entered wrong values in the …
3:58 PM Changeset [3769] by Martin Svensson
Fixes #770 Filter plug-in is lacking permission to read reporter lists
3:58 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) closed by Martin Svensson
fixed: (In [3769]) Fixes #770 Filter plug-in is lacking permission to read …
3:11 PM Ticket #775 (Refresh redirects) created by Johan Enell
From the experiment analyse page. I press 'Overview plots' and watch …
2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) closed by Martin Svensson
fixed: (In [3768]) Fixes #774 Export selected items doesn't work in TableExporter?
2:39 PM Changeset [3768] by Martin Svensson
Fixes #774 Export selected items doesn't work in TableExporter?
2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) created by Martin Svensson
The export of selected items from a table only gives a nullpointer …
1:31 PM Ticket #772 (Exporting features from Array designs) closed by Martin Svensson
fixed: (In [3767]) Fixes #772 Exporting features from Array designs
1:31 PM Changeset [3767] by Martin Svensson
Fixes #772 Exporting features from Array designs

Sep 21, 2007:

4:35 PM Changeset [3766] by Martin Svensson
Reference #524 A start
3:41 PM Changeset [3765] by Martin Svensson
References #364, Correct inconsistent variable/property 'plugin.dir' …
2:51 PM Changeset [3764] by Nicklas Nordborg
References #721. Added data layer classes and some core classes.
2:44 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) reopened by Johan Vallon-Christersson
To display the experimental factors in a similar way as in the …
2:35 PM Changeset [3763] by Martin Svensson
References #364, Added instructions how to make ant put …
10:47 AM Ticket #773 (Filter reporter table using array design) created by Johan Vallon-Christersson
It would be useful to filter reporter table using Array design. This …
10:39 AM Ticket #772 (Exporting features from Array designs) created by Johan Vallon-Christersson
When trying to export features from an array design (from the features …
9:18 AM Ticket #411 (Extending compressed file support and storage) closed by Nicklas Nordborg
fixed: (In [3762]) References #554, #746 and fixes #411. File and directories …
9:18 AM Changeset [3762] by Nicklas Nordborg
References #554, #746 and fixes #411. File and directories diagram …

Sep 20, 2007:

11:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by Nicklas Nordborg
worksforme: This has already been implemented.
8:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) created by Johan Vallon-Christersson
When viewing the bioassay table in a Bioassayset, allow the user to …
7:49 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) created by Johan Vallon-Christersson
Trying to run a filter that use my own Reporter list. Get error: …
4:57 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) closed by Nicklas Nordborg
invalid: The first problem is related to ticket #655 which partly will be fixed …
4:37 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) created by base
Went to Administrate -> Plugins > Definitions Got this non fatal …
3:47 PM Changeset [3761] by Martin Svensson
Fixes #689 Increase 99 hits per page limit (list views). The limit is …
3:47 PM Ticket #689 (Increase 99 hits per page limit (list views)) closed by Martin Svensson
fixed: (In [3761]) Fixes #689 Increase 99 hits per page limit (list views). …
2:27 PM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) closed by Nicklas Nordborg
wontfix: I just realized that once ticket #721 is fixed this can't be done.
1:35 PM Changeset [3760] by Martin Svensson
Fixes #364, Uses the existing JarClassLoader?, when reading/loading …
1:35 PM Ticket #364 (Support for automatic install of non-core plugins) closed by Martin Svensson
fixed: (In [3760]) Fixes #364, Uses the existing JarClassLoader?, when …
11:23 AM Changeset [3759] by Martin Svensson
References #364, documentation
10:39 AM Ticket #768 (Add information about running reporter update after migration if needed) created by Jari Häkkinen
9:54 AM Changeset [3758] by Nicklas Nordborg
Branch for working with ticket #721: Store data in files instead of in …
9:50 AM Changeset [3757] by Nicklas Nordborg
References #721: Store data in files instead of in the database …
9:12 AM Changeset [3756] by Nicklas Nordborg
Allow 'entrytbl' tags to have a 'frame' attribute in the same way as …

Sep 19, 2007:

2:36 PM Changeset [3755] by Martin Svensson
References #364, documentation
1:39 PM Ticket #767 (Migration fails if more than one user has the same quota) closed by Nicklas Nordborg
fixed: (In [3754]) Fixes #767: Migration fails if more than one user has the …
1:38 PM Changeset [3754] by Nicklas Nordborg
Fixes #767: Migration fails if more than one user has the same quota
1:25 PM Ticket #767 (Migration fails if more than one user has the same quota) created by Nicklas Nordborg
The stacktrace is: […] The migration will create new quota items, …

Sep 18, 2007:

3:47 PM Changeset [3753] by Martin Svensson
References #364, documentation
10:17 AM Ticket #732 (Link to basehacks has disappeard) closed by Jari Häkkinen
fixed: The information was already in 3rd-party-components.txt. This …
10:13 AM Changeset [3752] by Jari Häkkinen
Addresses #732.
9:45 AM ReleaseProcedure edited by Jari Häkkinen
Added item about updating link to latest stable BASE docs. (diff)
9:37 AM Changeset [3751] by Nicklas Nordborg
References #411. Migration should now automatically compress files …
9:28 AM Changeset [3750] by Nicklas Nordborg
References #411. Compiled AffxFusion?.jar with target="1.5" to make it …
9:21 AM Ticket #761 (Not equal in filter doesn't support wildcards) closed by Nicklas Nordborg
fixed: (In [3749]) Fixes #761: Not equal in filter doesn't support wildcards
9:21 AM Changeset [3749] by Nicklas Nordborg
Fixes #761: Not equal in filter doesn't support wildcards
9:02 AM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) closed by Nicklas Nordborg
fixed: (In [3748]) Fixes #765: Deleting an Affymetrix raw bioassay from …
9:02 AM Changeset [3748] by Nicklas Nordborg
Fixes #765: Deleting an Affymetrix raw bioassay from trashcan …
8:59 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) closed by Nicklas Nordborg
fixed: (In [3747]) Fixes #766: Batchers may be registered with a DbControl?
8:59 AM Changeset [3747] by Nicklas Nordborg
Fixes #766: Batchers may be registered with a DbControl? even if …
8:32 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) created by Nicklas Nordborg
This issue is related to #765. What is happening there is that a …

Sep 17, 2007:

8:13 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) created by Nicklas Nordborg
Dominic Oyeniran wrote: > I am experiencing the problem with deletion …
3:14 PM Changeset [3746] by Nicklas Nordborg
References #655: Plugins -> defintions fails with 'illegal attempt to …
3:07 PM Changeset [3745] by Nicklas Nordborg
Fixes #752: Configuration parameters not preserved when Plugin …
3:07 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) closed by Nicklas Nordborg
fixed: (In [3745]) Fixes #752: Configuration parameters not preserved when …
3:07 PM Ticket #764 (Selecting Bioassays in the plot tool.) created by Johan Vallon-Christersson
Suggested enhancements for plot functionality would enable useful plot …
3:04 PM Changeset [3744] by Martin Svensson
Fixes #763
3:04 PM Ticket #763 (Unresolved id:s in documentation) closed by Martin Svensson
fixed: (In [3744]) Fixes #763
3:03 PM Ticket #763 (Unresolved id:s in documentation) reopened by Martin Svensson
The links don't work to terms inside varlistentry
2:47 PM Changeset [3743] by Nicklas Nordborg
Fixes #753: NullPointerException? in plugin configuration list
2:47 PM Ticket #753 (NullPointerException in plugin configuration list) closed by Nicklas Nordborg
fixed: (In [3743]) Fixes #753: NullPointerException? in plugin configuration list
2:16 PM RobotsTxt edited by Jari Häkkinen
(diff)
2:01 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) closed by Jari Häkkinen
duplicate: Duplicate of ticket:753
1:40 PM DeveloperInformation edited by Jari Häkkinen
(diff)
1:25 PM WikiStart edited by Jari Häkkinen
Only show latest docs on first page. (diff)
1:16 PM Changeset [3742] by Nicklas Nordborg
Fixes #735: PermissionDeniedException? on array design list view
1:16 PM Ticket #735 (PermissionDeniedException on array design list view) closed by Nicklas Nordborg
fixed: (In [3742]) Fixes #735: PermissionDeniedException? on array design list view
1:16 PM Ticket #763 (Unresolved id:s in documentation) closed by Martin Svensson
wontfix: Seems to be some problem in the pdf-generator because the ids exists …
1:10 PM Ticket #758 (Store number of features in a database column of ArrayDesign) closed by Nicklas Nordborg
fixed: (In [3741]) Fixes #758: Store number of features in a database column …
1:10 PM Changeset [3741] by Nicklas Nordborg
Fixes #758: Store number of features in a database column of ArrayDesign?
1:08 PM Ticket #763 (Unresolved id:s in documentation) created by Martin Svensson
There are some complaints about unresolved ids when generating the …
12:58 PM Ticket #733 (Add support to select plugin configurations that should be imported) closed by Martin Svensson
fixed: (In [3740]) Fixes #733 Documentation
12:58 PM Changeset [3740] by Martin Svensson
Fixes #733 Documentation
9:48 AM WikiStart edited by Jari Häkkinen
Documentation moved somewhat to make place for trunk and latest stable … (diff)
9:29 AM Changeset [3739] by Jari Häkkinen
Removed invalid help info regarding 'ant doc' and 'ant docbook'.
9:29 AM Changeset [3738] by Jari Häkkinen
Removed invalid help info regarding 'ant doc' and 'ant docbook'.
9:23 AM Changeset [3737] by Nicklas Nordborg
Added modified AffxFusion?.jar that can read from InputStream? for some …

Sep 14, 2007:

4:22 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) created by Johan Vallon-Christersson
Expand the list of operators supported by the free-text filter. Add …
4:16 PM Ticket #761 (Not equal in filter doesn't support wildcards) created by Johan Enell
When I try to filter a String column with not equal ( <> ) it does nothing.
3:54 PM Changeset [3736] by Johan Enell
3:52 PM Changeset [3735] by Johan Enell
removed some system.out lines…
3:51 PM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) closed by Johan Enell
fixed: (In [3734]) Fixes #760
3:51 PM Changeset [3734] by Johan Enell
Fixes #760
2:08 PM Changeset [3733] by Martin Svensson
References #364 The functionallity is more or less done. The internal …
2:03 PM Changeset [3732] by Martin Svensson
References #733 The PluginConfigurationImporter? class can be used …
11:25 AM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) created by Johan Enell
10:59 AM Ticket #731 (Extend mapping in Base1PluginExecuter) closed by Johan Enell
fixed: (In [3731]) Fixes #731 Added mapping for all hard coded data. …
10:59 AM Changeset [3731] by Johan Enell
Fixes #731 Added mapping for all hard coded data. Corrected some …
8:41 AM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) created by Nicklas Nordborg
The file name is actually used to verify that a CEL file matches the …
8:28 AM Ticket #758 (Store number of features in a database column of ArrayDesign) created by Nicklas Nordborg
The current implementation doesn't store this information. We must …

Sep 13, 2007:

4:32 PM Changeset [3730] by Johan Enell
Fixes #757
4:32 PM Ticket #757 (BASEFile export wrong name for external id) closed by Johan Enell
fixed: (In [3730]) Fixes #757
4:17 PM Ticket #757 (BASEFile export wrong name for external id) created by Johan Enell
The name for the externl id of a reporter should be reporterId.
4:08 PM Changeset [3729] by Johan Enell
Fixes #739 Removes AnyToAny?
4:08 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3729]) Fixes #739 Removes AnyToAny?
3:46 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) reopened by Johan Enell
The AnyToAny? link should also be removed.
3:42 PM Ticket #756 (BioAssaySetExporter BASEFile) closed by Johan Enell
fixed: (In [3728]) Fixes #756
3:42 PM Changeset [3728] by Johan Enell
Fixes #756
3:34 PM Ticket #756 (BioAssaySetExporter BASEFile) created by Johan Enell
The ExtraValue? names should be exported with the prefix _xc_
3:32 PM Changeset [3727] by Johan Enell
Fixes #739
3:32 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3727]) Fixes #739
2:19 PM Changeset [3726] by Johan Enell
Fixes #755
2:19 PM Ticket #755 (Base1PluginExecuter permission) closed by Johan Enell
fixed: (In [3726]) Fixes #755
2:18 PM Ticket #755 (Base1PluginExecuter permission) created by Johan Enell
The Base1PluginExecuter needs CREATE and USE permisison on ExtraValueType?
12:59 AM Changeset [3725] by Jari Häkkinen
Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
12:58 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:55 AM Changeset [3724] by Jari Häkkinen
Merged patch release 2.4.1 to the webservices bracnh. Delta 2.4.1 - 2.4.
12:37 AM Milestone BASE 2.4.1 completed
Revision Log: log:branches/2.4-stable@3693:3722
12:37 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:35 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) closed by Jari Häkkinen
fixed
12:32 AM DownloadPage edited by Jari Häkkinen
Releasing 2.4.1 (diff)
12:20 AM Changeset [3723] by Jari Häkkinen
Changes for future release 2.4.2
12:06 AM Changeset [3722] by Jari Häkkinen
Tagging release 2.4.1

Sep 12, 2007:

10:25 PM Changeset [3721] by Jari Häkkinen
Preparing release 2.4.1
4:01 PM Changeset [3720] by Martin Svensson
References #733. The PluginConfigurationImporter? can now import a …
3:02 PM Changeset [3719] by Nicklas Nordborg
References #411: Most of the basic functionality is now in place and …
1:28 PM Changeset [3718] by Johan Enell
References #753 Added null check in the NameablePluginAdaptor?
1:01 PM Changeset [3717] by Johan Enell
removed some unused code
1:00 PM Ticket #754 (Base1PluginExecuter throws NullPointer) closed by Johan Enell
fixed: (In [3716]) Fixes #754
1:00 PM Changeset [3716] by Johan Enell
Fixes #754
11:51 AM Ticket #754 (Base1PluginExecuter throws NullPointer) created by Johan Enell
The Base1PluginExecuter throws a NullPointer? from the isInContext method.
11:29 AM Ticket #753 (NullPointerException in plugin configuration list) created by Johan Enell
If I try to list plugin configurations (with the definition column) …

Sep 11, 2007:

8:57 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) closed by Nicklas Nordborg
wontfix: This information is not stored so it can't be displayed.
4:37 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) created by Johan Vallon-Christersson
When creating a new Plugin configuration by copying an existing …
4:10 PM Ticket #751 (Fail to delete item from table view) created by Johan Vallon-Christersson
When in table view an item is marked (by check box). Selecting delete …
3:52 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) created by Johan Vallon-Christersson
For Raw bioassays display the plugin and plugin configuration used to …
2:03 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by Nicklas Nordborg
We never fixed the "Add file format" button from the auto-detect file …
1:13 PM Changeset [3715] by Nicklas Nordborg
References #746 and #554. Added new new UML file for MagicDraw? 12.5. …
12:56 PM Ticket #749 (TAR files with long files names are not supported) created by Nicklas Nordborg
The package for TAR that is used in BASE …

Sep 10, 2007:

4:17 PM Changeset [3714] by Martin Svensson
References #364.
2:42 PM Ticket #748 (MeV application fail to load data) created by Johan Vallon-Christersson
When trying to launch MeV (through the BASE 2 demo site) data fails to …

Sep 7, 2007:

11:23 AM Changeset [3713] by Jari Häkkinen
Addresses #744. Added information about migration restart do documentation.

Sep 6, 2007:

10:46 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) closed by Nicklas Nordborg
invalid: I think I have seen this before... It was a long time ago (before BASE …
9:25 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) created by base
java.lang.ClassFormatError? on page …
2:56 PM Changeset [3712] by Martin Svensson
References #364. Most of the plugin settings can be saved now, but …
1:56 PM Ticket #728 (./jobagent.sh start does not work) closed by Nicklas Nordborg
invalid: This is as expected. The script by default only looks in the current …
12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) created by Nicklas Nordborg
MagicDraw? now has a free "Community Edition" that is designed for open …
9:47 AM Changeset [3711] by Nicklas Nordborg
Fixes #736: Incorrect error message is displayed if a file upload fails
9:47 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) closed by Nicklas Nordborg
fixed: (In [3711]) Fixes #736: Incorrect error message is displayed if a file …
9:39 AM Changeset [3710] by Nicklas Nordborg
Fixes #745: NullPointerException? in File.getSize() References #628 and …
9:39 AM Ticket #745 (NullPointerException in File.getSize()) closed by Nicklas Nordborg
fixed: (In [3710]) Fixes #745: NullPointerException? in File.getSize() …
9:32 AM Ticket #745 (NullPointerException in File.getSize()) created by Nicklas Nordborg
I get a NullPointerException? in File.getSize() after a migration with …
9:28 AM Changeset [3709] by Nicklas Nordborg
References #744: Make it possible to resume the migration program in …

Sep 5, 2007:

5:48 PM Changeset [3708] by Martin Svensson
References #364 Configuring the installation is allmost done.
11:42 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) created by Nicklas Nordborg
The migration program can take a very long time to run if there is a …
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) closed by Nicklas Nordborg
fixed: Fixed in [3703]
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) created by Nicklas Nordborg
we have noted that none of the value in the data file such as …
11:29 AM Changeset [3707] by Nicklas Nordborg
Fixes #740: Missing AnyToAny? item causes ItemNotFoundException? when …
11:29 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) closed by Nicklas Nordborg
fixed: (In [3707]) Fixes #740: Missing AnyToAny? item causes …
9:33 AM Ticket #742 (Refactor BioAssaySetExporter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:32 AM Ticket #741 (Refactor Base1PluginExecuter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:15 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) created by Nicklas Nordborg
A transformation may have AnyToAny? links to other items (files). Due …
9:03 AM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) created by Nicklas Nordborg
The stdin.txt is always deleted and the stdout.txt is always kept. The …

Sep 3, 2007:

8:34 AM Ticket #738 (Implement file upload as a pure servlet) created by Nicklas Nordborg
The JSP:s used for file upload are sensitive to line breaks in the JSP …
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