Timeline



Sep 14, 2007:

4:22 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) created by Johan Vallon-Christersson
Expand the list of operators supported by the free-text filter. Add …
4:16 PM Ticket #761 (Not equal in filter doesn't support wildcards) created by Johan Enell
When I try to filter a String column with not equal ( <> ) it does nothing.
3:54 PM Changeset [3736] by Johan Enell
3:52 PM Changeset [3735] by Johan Enell
removed some system.out lines…
3:51 PM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) closed by Johan Enell
fixed: (In [3734]) Fixes #760
3:51 PM Changeset [3734] by Johan Enell
Fixes #760
2:08 PM Changeset [3733] by Martin Svensson
References #364 The functionallity is more or less done. The internal …
2:03 PM Changeset [3732] by Martin Svensson
References #733 The PluginConfigurationImporter? class can be used …
11:25 AM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) created by Johan Enell
10:59 AM Ticket #731 (Extend mapping in Base1PluginExecuter) closed by Johan Enell
fixed: (In [3731]) Fixes #731 Added mapping for all hard coded data. …
10:59 AM Changeset [3731] by Johan Enell
Fixes #731 Added mapping for all hard coded data. Corrected some …
8:41 AM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) created by Nicklas Nordborg
The file name is actually used to verify that a CEL file matches the …
8:28 AM Ticket #758 (Store number of features in a database column of ArrayDesign) created by Nicklas Nordborg
The current implementation doesn't store this information. We must …

Sep 13, 2007:

4:32 PM Changeset [3730] by Johan Enell
Fixes #757
4:32 PM Ticket #757 (BASEFile export wrong name for external id) closed by Johan Enell
fixed: (In [3730]) Fixes #757
4:17 PM Ticket #757 (BASEFile export wrong name for external id) created by Johan Enell
The name for the externl id of a reporter should be reporterId.
4:08 PM Changeset [3729] by Johan Enell
Fixes #739 Removes AnyToAny?
4:08 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3729]) Fixes #739 Removes AnyToAny?
3:46 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) reopened by Johan Enell
The AnyToAny? link should also be removed.
3:42 PM Ticket #756 (BioAssaySetExporter BASEFile) closed by Johan Enell
fixed: (In [3728]) Fixes #756
3:42 PM Changeset [3728] by Johan Enell
Fixes #756
3:34 PM Ticket #756 (BioAssaySetExporter BASEFile) created by Johan Enell
The ExtraValue? names should be exported with the prefix _xc_
3:32 PM Changeset [3727] by Johan Enell
Fixes #739
3:32 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3727]) Fixes #739
2:19 PM Changeset [3726] by Johan Enell
Fixes #755
2:19 PM Ticket #755 (Base1PluginExecuter permission) closed by Johan Enell
fixed: (In [3726]) Fixes #755
2:18 PM Ticket #755 (Base1PluginExecuter permission) created by Johan Enell
The Base1PluginExecuter needs CREATE and USE permisison on ExtraValueType?
12:59 AM Changeset [3725] by Jari Häkkinen
Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
12:58 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:55 AM Changeset [3724] by Jari Häkkinen
Merged patch release 2.4.1 to the webservices bracnh. Delta 2.4.1 - 2.4.
12:37 AM Milestone BASE 2.4.1 completed
Revision Log: log:branches/2.4-stable@3693:3722
12:37 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:35 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) closed by Jari Häkkinen
fixed
12:32 AM DownloadPage edited by Jari Häkkinen
Releasing 2.4.1 (diff)
12:20 AM Changeset [3723] by Jari Häkkinen
Changes for future release 2.4.2
12:06 AM Changeset [3722] by Jari Häkkinen
Tagging release 2.4.1

Sep 12, 2007:

10:25 PM Changeset [3721] by Jari Häkkinen
Preparing release 2.4.1
4:01 PM Changeset [3720] by Martin Svensson
References #733. The PluginConfigurationImporter? can now import a …
3:02 PM Changeset [3719] by Nicklas Nordborg
References #411: Most of the basic functionality is now in place and …
1:28 PM Changeset [3718] by Johan Enell
References #753 Added null check in the NameablePluginAdaptor?
1:01 PM Changeset [3717] by Johan Enell
removed some unused code
1:00 PM Ticket #754 (Base1PluginExecuter throws NullPointer) closed by Johan Enell
fixed: (In [3716]) Fixes #754
1:00 PM Changeset [3716] by Johan Enell
Fixes #754
11:51 AM Ticket #754 (Base1PluginExecuter throws NullPointer) created by Johan Enell
The Base1PluginExecuter throws a NullPointer? from the isInContext method.
11:29 AM Ticket #753 (NullPointerException in plugin configuration list) created by Johan Enell
If I try to list plugin configurations (with the definition column) …

Sep 11, 2007:

8:57 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) closed by Nicklas Nordborg
wontfix: This information is not stored so it can't be displayed.
4:37 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) created by Johan Vallon-Christersson
When creating a new Plugin configuration by copying an existing …
4:10 PM Ticket #751 (Fail to delete item from table view) created by Johan Vallon-Christersson
When in table view an item is marked (by check box). Selecting delete …
3:52 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) created by Johan Vallon-Christersson
For Raw bioassays display the plugin and plugin configuration used to …
2:03 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by Nicklas Nordborg
We never fixed the "Add file format" button from the auto-detect file …
1:13 PM Changeset [3715] by Nicklas Nordborg
References #746 and #554. Added new new UML file for MagicDraw? 12.5. …
12:56 PM Ticket #749 (TAR files with long files names are not supported) created by Nicklas Nordborg
The package for TAR that is used in BASE …

Sep 10, 2007:

4:17 PM Changeset [3714] by Martin Svensson
References #364.
2:42 PM Ticket #748 (MeV application fail to load data) created by Johan Vallon-Christersson
When trying to launch MeV (through the BASE 2 demo site) data fails to …

Sep 7, 2007:

11:23 AM Changeset [3713] by Jari Häkkinen
Addresses #744. Added information about migration restart do documentation.

Sep 6, 2007:

10:46 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) closed by Nicklas Nordborg
invalid: I think I have seen this before... It was a long time ago (before BASE …
9:25 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) created by base
java.lang.ClassFormatError? on page …
2:56 PM Changeset [3712] by Martin Svensson
References #364. Most of the plugin settings can be saved now, but …
1:56 PM Ticket #728 (./jobagent.sh start does not work) closed by Nicklas Nordborg
invalid: This is as expected. The script by default only looks in the current …
12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) created by Nicklas Nordborg
MagicDraw? now has a free "Community Edition" that is designed for open …
9:47 AM Changeset [3711] by Nicklas Nordborg
Fixes #736: Incorrect error message is displayed if a file upload fails
9:47 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) closed by Nicklas Nordborg
fixed: (In [3711]) Fixes #736: Incorrect error message is displayed if a file …
9:39 AM Changeset [3710] by Nicklas Nordborg
Fixes #745: NullPointerException? in File.getSize() References #628 and …
9:39 AM Ticket #745 (NullPointerException in File.getSize()) closed by Nicklas Nordborg
fixed: (In [3710]) Fixes #745: NullPointerException? in File.getSize() …
9:32 AM Ticket #745 (NullPointerException in File.getSize()) created by Nicklas Nordborg
I get a NullPointerException? in File.getSize() after a migration with …
9:28 AM Changeset [3709] by Nicklas Nordborg
References #744: Make it possible to resume the migration program in …

Sep 5, 2007:

5:48 PM Changeset [3708] by Martin Svensson
References #364 Configuring the installation is allmost done.
11:42 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) created by Nicklas Nordborg
The migration program can take a very long time to run if there is a …
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) closed by Nicklas Nordborg
fixed: Fixed in [3703]
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) created by Nicklas Nordborg
we have noted that none of the value in the data file such as …
11:29 AM Changeset [3707] by Nicklas Nordborg
Fixes #740: Missing AnyToAny? item causes ItemNotFoundException? when …
11:29 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) closed by Nicklas Nordborg
fixed: (In [3707]) Fixes #740: Missing AnyToAny? item causes …
9:33 AM Ticket #742 (Refactor BioAssaySetExporter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:32 AM Ticket #741 (Refactor Base1PluginExecuter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:15 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) created by Nicklas Nordborg
A transformation may have AnyToAny? links to other items (files). Due …
9:03 AM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) created by Nicklas Nordborg
The stdin.txt is always deleted and the stdout.txt is always kept. The …

Sep 3, 2007:

8:34 AM Ticket #738 (Implement file upload as a pure servlet) created by Nicklas Nordborg
The JSP:s used for file upload are sensitive to line breaks in the JSP …

Aug 30, 2007:

11:07 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) created by Nicklas Nordborg
I am not sure if the extra new line at the end of …
10:58 PM Ticket #736 (Incorrect error message is displayed if a file upload fails) created by Nicklas Nordborg
The JSP page that should take care of the error and display it has a …
3:59 PM Changeset [3706] by Martin Svensson
References #364 Started updating the GUI to support auto installation …

Aug 29, 2007:

8:50 PM Changeset [3705] by Peter Johansson
refs #639

Aug 28, 2007:

4:42 PM Changeset [3704] by Martin Svensson
References #364 Moved the PluginInfo? class to another package, added a …
4:20 PM Ticket #735 (PermissionDeniedException on array design list view) created by base
As a normal user, another blank list view with the following in …
3:37 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) created by base
As an admin user I can create and view plugin configurations fine. As …

Aug 27, 2007:

12:53 PM Ticket #733 (Add support to select plugin configurations that should be imported) created by Martin Svensson
The plugin-configuration-importer plugin should offer a possibility …
10:03 AM Changeset [3703] by Martin Svensson
Fixes the problem with '+' before the exponent (when its 0). The '+' …

Aug 24, 2007:

3:37 PM Changeset [3702] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
3:36 PM Changeset [3701] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
1:53 PM Ticket #732 (Link to basehacks has disappeard) created by Jari Häkkinen
We need to keep a link to http://trac.thep.lu.se/trac/basehacks
10:44 AM Ticket #731 (Extend mapping in Base1PluginExecuter) created by Johan Enell
The mapping in the executer should be extended. For instance …

Aug 23, 2007:

1:42 PM Changeset [3700] by Martin Svensson
References #364 The main functions in core is now done for this. A …

Aug 22, 2007:

12:42 PM Changeset [3699] by Jari Häkkinen
URL to demo server change
11:11 AM WikiStart edited by Jari Häkkinen
URL to demo server change (diff)

Aug 21, 2007:

4:17 PM Changeset [3698] by Martin Svensson
References #364 Automatic install non-core plugins. First check-in, …
3:59 PM Changeset [3697] by Jari Häkkinen
Removed 'reference reference' repeat.
3:14 PM Ticket #730 (Documentation figures should be centered by default) created by Jari Häkkinen
It would also be nice to be able to have figures with text next to it …
2:08 PM Changeset [3696] by Jari Häkkinen
Removing obsolete branch. Superseeded by …
11:58 AM Changeset [3695] by Jari Häkkinen
Merged log:trunk#3650:3691 into the webservices branch.

Aug 20, 2007:

4:14 PM WikiStart edited by Jari Häkkinen
Added feature list. (diff)
4:02 PM Milestone BASE 2.4 completed
The aim is to fix various outstanding issues. Major features such as …
4:02 PM Ticket #729 (./jobagent.sh should accept command `status`) created by Jari Häkkinen
status should return if the agent is running or not. Needed for …
3:59 PM Ticket #728 (./jobagent.sh start does not work) created by Jari Häkkinen
The response is: […] Issuing `./jobagent.sh -c …
3:55 PM Ticket #659 (Add wiki page describing BASE features) closed by Jari Häkkinen
fixed: First version added as http://base.thep.lu.se/wiki/Features
3:32 PM Features edited by Jari Häkkinen
More features. (diff)
3:28 PM Features created by Jari Häkkinen
First list of features.
3:22 PM ReleaseProcedure edited by Jari Häkkinen
More fixes to the release procedures. (diff)
2:58 PM ReleaseProcedure edited by Jari Häkkinen
Added link to announcement mail (diff)
2:51 PM DownloadPage edited by Jari Häkkinen
(diff)
2:49 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
2:49 PM DownloadPage edited by Jari Häkkinen
Releasing 2.4 (diff)
2:22 PM Changeset [3694] by Jari Häkkinen
Changes for future release 2.4.1
2:18 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
2:04 PM Changeset [3693] by Jari Häkkinen
Tagging version 2.4
1:56 PM Changeset [3692] by Jari Häkkinen
Preparing release 2.4
1:50 PM Changeset [3691] by Jari Häkkinen
Changes for future release 2.5
1:49 PM Changeset [3690] by Jari Häkkinen
Forking new minor version 2.4 branch.
1:42 PM ReleaseProcedure edited by Jari Häkkinen
Improving procedure. (diff)
12:04 PM Changeset [3689] by Jari Häkkinen
Fixes #615.
12:04 PM Ticket #615 (Write 'Installing job agents' section) closed by Jari Häkkinen
fixed: (In [3689]) Fixes #615.
12:03 PM Changeset [3688] by Jari Häkkinen
Updated link to release procedures.
12:02 PM Changeset [3687] by Jari Häkkinen
Removed links to deleted files.
9:34 AM Changeset [3686] by Jari Häkkinen
Refs #615 and fixed spelling.
9:33 AM Changeset [3685] by Jari Häkkinen
Removed obsolete files.

Aug 17, 2007:

4:56 PM Ticket #664 (Remove chapter 6.1.3) closed by Jari Häkkinen
fixed: (In [3684]) Fixes #664
4:56 PM Changeset [3684] by Jari Häkkinen
Fixes #664
4:28 PM Changeset [3683] by Jari Häkkinen
Spelling.
3:45 PM Changeset [3682] by Jari Häkkinen
Added Peter Johansson.
1:56 PM Changeset [3681] by Nicklas Nordborg
References #721: Store data in files instead of in the database First …
12:04 PM Ticket #727 (Add presentations and publications to the wiki) created by Jari Häkkinen
11:43 AM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) created by Jari Häkkinen
This is for the marketing department.
11:26 AM Changeset [3680] by Nicklas Nordborg
Removed explicit call to System.gc(). Better command line parameters …
11:09 AM Ticket #725 (Transfer all old documentation to the new wiki system.) created by Jari Häkkinen
11:04 AM Ticket #695 (implement run method in AbstractPlugin??) closed by Jari Häkkinen
wontfix
9:18 AM Changeset [3679] by Jari Häkkinen
Changing the pesky "a (&auml;) character to a.
9:12 AM ReleaseProcedure edited by Jari Häkkinen
Added a warning about breaking UTF-8 character encoding. (diff)
8:29 AM Changeset [3678] by Nicklas Nordborg
Require DTD files to be encoded in ISO-8859-1
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