Timeline



Jul 18, 2007:

10:58 PM Ticket #683 (Holding down SHIFT, CTRL or ALT when creating a new item should ...) created by Nicklas Nordborg
Bob MacCallum wrote: > I don't know if this would be dangerous, but …
3:46 PM Ticket #451 (Zipped download) updated by Martin Svensson
(In [3568]) References #451 Packer plugin for zip, tar.gz and tar.bz2 …
3:46 PM Changeset [3568] by Martin Svensson
References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
2:43 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by Nicklas Nordborg
worksforme: I am not able to reproduce this
2:41 PM Ticket #670 (Update doc on formulas and extravalues) closed by Nicklas Nordborg
invalid: There is no documentation written that can be updated.
2:39 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) closed by Nicklas Nordborg
duplicate: Duplicate of #509. This is a problem with MySQL. You have the …
1:54 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) created by base
Hi! After BASE2 first start i loaded some plugin for Affy (RMA e …
11:42 AM Changeset [3567] by Nicklas Nordborg
Fixes #681
11:42 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) closed by Nicklas Nordborg
fixed: (In [3567]) Fixes #681
11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) updated by Nicklas Nordborg
Status, Owner changed
11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) created by Nicklas Nordborg
The plug-in/job configuration wizard automatically selects the item …
10:41 AM Tickets #678,​679,​680 batch updated by Nicklas Nordborg
fixed: (In [3566]) Fixes #678, #679, #680
10:41 AM Changeset [3566] by Nicklas Nordborg
Fixes #678, #679, #680
9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) updated by Nicklas Nordborg
Owner, Status changed
9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) created by Nicklas Nordborg
9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) updated by Nicklas Nordborg
Status, Owner changed
9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) created by Nicklas Nordborg
Currently, only the regular expressions, and other parser settings are …
9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) updated by Nicklas Nordborg
Status, Owner changed
9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) created by Nicklas Nordborg
1. Enter a plug-in configuration sequence for one of the flat file …

Jul 17, 2007:

1:34 PM Ticket #326 (Mass annotation plug-in) updated by Nicklas Nordborg
Owner, Status changed
1:33 PM Changeset [3565] by Nicklas Nordborg
References #551: Moved doc about import plug-ins from old to new …
1:33 PM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3565]) References #551: Moved doc about import plug-ins from old …
11:28 AM Changeset [3564] by Nicklas Nordborg
Fixes #675, #676 and #677
11:28 AM Tickets #675,​676,​677 batch updated by Nicklas Nordborg
fixed: (In [3564]) Fixes #675, #676 and #677
10:57 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) updated by Nicklas Nordborg
Owner, Status changed
10:57 AM Ticket #676 (The autodetect file format function doesn't check ...) updated by Nicklas Nordborg
Status, Owner changed
10:57 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) updated by Nicklas Nordborg
Status, Owner changed
9:56 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) created by Nicklas Nordborg
9:54 AM Ticket #676 (The autodetect file format function doesn't check ...) created by Nicklas Nordborg
9:53 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) created by Nicklas Nordborg
7:50 AM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
Owner, Status changed

Jul 16, 2007:

2:53 PM Ticket #514 (Change permissions in Power User) updated by Nicklas Nordborg
If the permissions for 'Power user' changes the test program(s) at …
2:47 PM Ticket #470 (Improve batch upload to support tar:ed files) closed by Nicklas Nordborg
fixed: (In [3563]) Fixes #470
2:46 PM Changeset [3563] by Nicklas Nordborg
Fixes #470
2:43 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Status changed
2:43 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Status changed
2:41 PM Ticket #326 (Mass annotation plug-in) updated by Nicklas Nordborg
Summary changed
2:40 PM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
Description changed
2:37 PM Ticket #659 (Add wiki page describing BASE features) updated by Nicklas Nordborg
Description, Summary changed
2:35 PM Tickets #649,​674 batch updated by Nicklas Nordborg
fixed: (In [3562]) Fixes #649 and #674
2:35 PM Changeset [3562] by Nicklas Nordborg
Fixes #649 and #674
2:17 PM Ticket #649 (Use correct avgerage method in Experiment Explorer) updated by Nicklas Nordborg
Description, Type changed
2:16 PM Ticket #674 (Add possibility to set average method for extended properties and raw ...) created by Nicklas Nordborg
Relates to #648 and #649
12:04 PM Changeset [3561] by Nicklas Nordborg
Fixes #672: Enable AnnotationRestriction to be used on joined tables
12:04 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) closed by Nicklas Nordborg
fixed: (In [3561]) Fixes #672: Enable AnnotationRestriction to be used on …
12:02 PM Ticket #573 (Trim whitespace when checking for unique values) updated by Nicklas Nordborg
(In [3560]) References #573. Must also trim annotation values or the …
12:02 PM Changeset [3560] by Nicklas Nordborg
References #573. Must also trim annotation values or the filter will …
10:46 AM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) updated by Nicklas Nordborg
Status changed
9:55 AM Changeset [3559] by Nicklas Nordborg
References #625. Use correct plugin configuration.
9:55 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3559]) References #625. Use correct plugin configuration.
9:44 AM Changeset [3558] by Nicklas Nordborg
Fixes #669
9:44 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by Nicklas Nordborg
fixed: (In [3558]) Fixes #669
9:01 AM Changeset [3557] by Nicklas Nordborg
Fixes #648
9:01 AM Ticket #648 (Average method for formulas and extra values) closed by Nicklas Nordborg
fixed: (In [3557]) Fixes #648
8:57 AM Ticket #648 (Average method for formulas and extra values) reopened by Nicklas Nordborg
The update sets the average method to geometric mean for all formulas …
8:43 AM Tickets #650,​648 batch updated by Nicklas Nordborg
fixed: (In [3556]) Fixes #648 and #650
8:43 AM Changeset [3556] by Nicklas Nordborg
Fixes #648 and #650
8:21 AM Ticket #648 (Average method for formulas and extra values) reopened by Nicklas Nordborg
Add @since to javadoc for new methods.
8:20 AM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) updated by Nicklas Nordborg
Summary changed
8:18 AM Ticket #650 (Geometric mean) reopened by Nicklas Nordborg
Add correct @version number in javadoc.
8:16 AM Ticket #326 (Mass annotation plug-in) updated by Nicklas Nordborg
Description changed
7:57 AM Ticket #649 (Use correct avgerage method in Experiment Explorer) updated by Nicklas Nordborg
Summary, Status changed
7:57 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) updated by Nicklas Nordborg
Status, Owner, Description, Summary changed

Jul 13, 2007:

4:29 PM Changeset [3555] by Martin Svensson
Reference #451 The actual compression is not quite written yet.

Jul 12, 2007:

5:00 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) updated by Johan Enell
I would do a query that look something like this. […]
4:46 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) created by Johan Enell
The header count is wrong in section spots when a matrix is exported. …
4:28 PM Tickets #590,​671 batch updated by Johan Enell
fixed: (In [3554]) Fixes #671, References #590 Test for BioAssaySetExporter
4:28 PM Changeset [3554] by Johan Enell
Fixes #671, References #590 Test for BioAssaySetExporter added which …

Jul 10, 2007:

8:26 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) created by Nicklas Nordborg
For example, the query below gives a stracktrace, since annotations …

Jul 9, 2007:

1:14 PM Ticket #451 (Zipped download) updated by Martin Svensson
Status, Owner changed
12:45 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) closed by Martin Svensson
fixed: Decided after a closer look to not change the view-pages.
11:39 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
(In [3553]) References #375. The list pages is done but the view pages …
11:39 AM Changeset [3553] by Martin Svensson
References #375. The list pages is done but the view pages should be …

Jul 6, 2007:

4:53 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
(In [3552]) References #375. Only wants to do a commit before the weekend.
4:53 PM Changeset [3552] by Martin Svensson
References #375. Only wants to do a commit before the weekend.
2:23 PM Ticket #590 (Create test program for BioAsssaySetExporter) updated by Johan Enell
Status, Owner changed
2:09 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) updated by Johan Enell
Status, Owner changed
2:03 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) created by base
Greetings! I've discovered a problem with exporting BASEfiles. I …

Jul 5, 2007:

7:33 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Nicklas Nordborg
I think the code needs to be improved: * The names of the users, …
4:20 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
(In [3551]) References #375. Added column with projects, groups, users …
4:20 PM Changeset [3551] by Martin Svensson
References #375. Added column with projects, groups, users that an …
1:18 PM Ticket #611 (Improvements of Trashcan) closed by Martin Svensson
fixed: (In [3550]) Fixes #611 Improvements of Trashcan. Changed confusing …
1:18 PM Changeset [3550] by Martin Svensson
Fixes #611 Improvements of Trashcan. Changed confusing button …
9:43 AM Ticket #611 (Improvements of Trashcan) updated by Martin Svensson
A restored item should not be possible to view in the trashcan, while …

Jul 4, 2007:

2:59 PM Changeset [3549] by Martin Svensson
References #611. Added new icon and text on the delete button in …
2:59 PM Ticket #611 (Improvements of Trashcan) updated by Martin Svensson
(In [3549]) References #611. Added new icon and text on the delete …
2:15 PM Ticket #611 (Improvements of Trashcan) updated by Martin Svensson
Child bioassaysets/transformation is not restored when restoring a …
11:36 AM Changeset [3548] by Martin Svensson
References #375.Missed one view-page in the last commit
11:36 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
(In [3548]) References #375.Missed one view-page in the last commit
10:31 AM Ticket #611 (Improvements of Trashcan) updated by Martin Svensson
Status, Owner changed

Jul 3, 2007:

2:42 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
It will probably be to much information in the tooltip if every …
11:41 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
(In [3547]) References #375. The first part is done, listing which …
11:41 AM Changeset [3547] by Martin Svensson
References #375. The first part is done, listing which …
11:26 AM Ticket #470 (Improve batch upload to support tar:ed files) reopened by Jari Häkkinen
Section 8.2.1 Uploading a new file. Update the information on …
11:18 AM Ticket #670 (Update doc on formulas and extravalues) updated by Johan Enell
Description changed
11:17 AM Ticket #670 (Update doc on formulas and extravalues) created by Johan Enell
Depends on #669, #546 Update documentation on formulas and …
11:12 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) created by Johan Enell
Depends on #648
10:53 AM Ticket #668 (Displaying icons in the text) created by Johan Enell
Icons are displayed in different ways in the text. …
10:39 AM Ticket #667 (Move ch. 7 to a lower level) created by Johan Enell
I think the that …
10:33 AM Ticket #666 (Image in chapter 6.2.3) updated by Johan Enell
Maybe this ticket should be more diabolic but this was the best I …
10:29 AM Ticket #666 (Image in chapter 6.2.3) created by Johan Enell
I think an image on single-item view for a project should be added to …
10:05 AM Ticket #665 (Links in the documentation) created by Johan Enell
I think we should discuss how the links are used in the documentations …
9:46 AM Ticket #664 (Remove chapter 6.1.3) created by Johan Enell
I think that the section 6.1.3 Share an item to other users should be …

Jul 2, 2007:

11:03 PM Ticket #663 (TOC is to big) updated by Nicklas Nordborg
I don't agree. I think it is good that it is big. In the beginning the …
5:55 PM Ticket #663 (TOC is to big) updated by Johan Enell
This is on the first page only…
5:54 PM Ticket #663 (TOC is to big) created by Johan Enell
The table of contents of the documentations is getting big. Maybe its …
3:51 PM Milestone BASE 2.3.2 completed
3:50 PM Changeset [3546] by Jari Häkkinen
Removing obsolete branch.
3:45 PM Changeset [3545] by Johan Enell
Merged log:branches/2.3.2#3537:3542 to trunk.
9:41 AM Ticket #191 (Mobile number field in user info?) closed by Martin Svensson
fixed: (In [3544]) Fixes #191. Updating schema version and added …
9:41 AM Changeset [3544] by Martin Svensson
Fixes #191. Updating schema version and added since(javadoc) to new methods

Jun 30, 2007:

1:02 AM RobotsTxt edited by Jari Häkkinen
(diff)
12:24 AM DownloadPage edited by Jari Häkkinen
2.3.2 released. (diff)
12:11 AM Changeset [3543] by Jari Häkkinen
Tagging version 2.3.2

Jun 29, 2007:

11:31 PM Changeset [3542] by Jari Häkkinen
Bumping version number.
11:29 PM Ticket #191 (Mobile number field in user info?) reopened by Nicklas Nordborg
I think the schema version should be updated as well. The extended …
4:46 PM Tickets #661,​662 batch updated by Johan Enell
fixed: (In [3541]) Fixes #661, #662
4:46 PM Changeset [3541] by Johan Enell
Fixes #661, #662
2:39 PM Changeset [3540] by Peter Johansson
corrected address to BASE-hacks trac site
2:35 PM Ticket #191 (Mobile number field in user info?) closed by Martin Svensson
fixed: (In [3539]) Fixes #191 Mobile number field in user info?
2:35 PM Changeset [3539] by Martin Svensson
Fixes #191 Mobile number field in user info?
2:30 PM Ticket #660 (Parameters should be sorted on position) closed by Johan Enell
fixed: (In [3538]) Fixes #660 Added permission delete for File and read for Job
2:30 PM Changeset [3538] by Johan Enell
Fixes #660 Added permission delete for File and read for Job
2:29 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Martin Svensson
Owner, Status changed
10:03 AM Ticket #660 (Parameters should be sorted on position) updated by Johan Enell
Status changed
10:03 AM Ticket #661 (Print parameters in correct order) updated by Johan Enell
Status changed
10:02 AM Ticket #662 (Print 'section\tsettings') updated by Johan Enell
Status, Owner changed
9:54 AM Ticket #662 (Print 'section\tsettings') created by Johan Enell
If the first parameter isn't section, 'section\tsettings' should be …
9:50 AM Ticket #661 (Print parameters in correct order) created by Johan Enell
The parameters sent to BioAssaySetExporter.exportBaseFile should be …
9:45 AM Ticket #660 (Parameters should be sorted on position) created by Johan Enell
The job parameters that the Base1PluginExecuter sends to …
9:36 AM Changeset [3537] by Jari Häkkinen
New patch release branch for 2.3
9:09 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Martin Svensson
(In [3536]) References #625. This will correct the issue related to #657
9:09 AM Changeset [3536] by Martin Svensson
References #625. This will correct the issue related to #657

Jun 28, 2007:

7:12 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
There is a problem if only one out of several possible plug-ins can be …
7:10 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by Nicklas Nordborg
duplicate: Should be fixed as part of #625.
7:09 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) reopened by Nicklas Nordborg
The checked in changes fixes the problem, but it also destroys the fix …
5:43 PM Ticket #191 (Mobile number field in user info?) updated by Martin Svensson
(In [3535]) References #191
5:43 PM Changeset [3535] by Martin Svensson
References #191
4:13 PM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) closed by Martin Svensson
worksforme
3:43 PM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) updated by Martin Svensson
Status, Owner changed
3:40 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by Martin Svensson
fixed
2:53 PM Changeset [3534] by Martin Svensson
References #657
2:53 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) updated by Martin Svensson
(In [3534]) References #657
2:47 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) updated by Martin Svensson
Status, Owner changed
1:46 PM Ticket #659 (Add wiki page describing BASE features) created by Johan Enell
A features list could useful from the fist page in the wiki. …
1:21 AM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) created by Jari Häkkinen
I am trying to start RMAExpress/Plier, but after selecting bioassays …
1:09 AM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) updated by Jari Häkkinen
Description changed
1:07 AM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) updated by Jari Häkkinen
Priority, Description changed
12:22 AM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) created by Jari Häkkinen
the affymetrix INTENSITY plug-ins are not recognized. When "New root …

Jun 27, 2007:

11:22 PM Changeset [3533] by Jari Häkkinen
Merged log:trunk#3433:3532 into the webservices branch.
10:33 PM Ticket #656 (Update release procedure) updated by Jari Häkkinen
Status changed
10:33 PM Ticket #656 (Update release procedure) created by Jari Häkkinen
4:39 PM Ticket #191 (Mobile number field in user info?) updated by Martin Svensson
Owner, Status changed
4:35 PM Ticket #358 (Better info from Migration tool) closed by Martin Svensson
fixed: (In [3532]) Fixes #358 Better info from migration tool
4:35 PM Changeset [3532] by Martin Svensson
Fixes #358 Better info from migration tool

Jun 26, 2007:

1:12 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3531]) References #358. Some changes on the log statements
1:12 PM Changeset [3531] by Martin Svensson
References #358. Some changes on the log statements

Jun 25, 2007:

10:05 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) created by Jari Häkkinen
illegal attempt to dereference collection …

Jun 23, 2007:

8:31 PM Ticket #654 (Batch deletion of reporters) created by Nicklas Nordborg
From a mail exchange with Phillippe: >> Just a note regarding deleting …

Jun 22, 2007:

11:22 AM Changeset [3530] by Johan Enell
some admin changes

Jun 21, 2007:

5:16 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3529]) References #358. Use log4j properly in migration. Updated …
5:16 PM Changeset [3529] by Martin Svensson
References #358. Use log4j properly in migration. Updated more …
4:20 PM Ticket #648 (Average method for formulas and extra values) closed by Johan Enell
fixed: (In [3528]) AverageMethod added Fixes #648
4:20 PM Changeset [3528] by Johan Enell
AverageMethod added Fixes #648
4:13 PM Ticket #648 (Average method for formulas and extra values) updated by Johan Enell
Status, Owner changed
1:19 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) closed by Nicklas Nordborg
fixed: (In [3527]) Fixes #642: Add method that finds an enumerated annotation …
1:19 PM Changeset [3527] by Nicklas Nordborg
Fixes #642: Add method that finds an enumerated annotation value that …
12:52 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) updated by Nicklas Nordborg
Status, Owner changed
12:50 PM Ticket #252 (Make the trashcan smarter when deleting items) closed by Nicklas Nordborg
fixed: (In [3526]) Fixes #252: Make the trashcan smarter when deleting items
12:50 PM Changeset [3526] by Nicklas Nordborg
Fixes #252: Make the trashcan smarter when deleting items
8:22 AM Ticket #653 (Implement DbControl.flush() method) created by Nicklas Nordborg
This method should flush queued changes to the database in the same …

Jun 20, 2007:

5:33 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) closed by Nicklas Nordborg
duplicate: I have now been able to reproduce this problem. It is triggered when a …
4:56 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3525]) References #358. Use log4j properly in migration. Updated …
4:56 PM Changeset [3525] by Martin Svensson
References #358. Use log4j properly in migration. Updated more files…
3:01 PM Changeset [3524] by Nicklas Nordborg
References #583: Send message at job completion only if user has …
3:01 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) updated by Nicklas Nordborg
(In [3524]) References #583: Send message at job completion only if …
2:48 PM Ticket #252 (Make the trashcan smarter when deleting items) updated by Nicklas Nordborg
Status changed
2:48 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by Nicklas Nordborg
Status changed
2:32 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) closed by Nicklas Nordborg
fixed: (In [3523]) Fixes #583: Allow changing the array design of a raw …
2:32 PM Changeset [3523] by Nicklas Nordborg
Fixes #583: Allow changing the array design of a raw bioasay when it …
1:28 PM Changeset [3522] by Johan Enell
Fixes #650 added some info to the geometricMean method
1:28 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3522]) Fixes #650 added some info to the geometricMean method
10:47 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) updated by Nicklas Nordborg
Status changed
10:44 AM Changeset [3521] by Nicklas Nordborg
Fixes #556: Add a favicon.ico
10:44 AM Ticket #556 (Add a favicon.ico) closed by Nicklas Nordborg
fixed: (In [3521]) Fixes #556: Add a favicon.ico
9:36 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) closed by Nicklas Nordborg
fixed: (In [3520]) Fixes #652: Experiment explorer throws exception when …
9:36 AM Changeset [3520] by Nicklas Nordborg
Fixes #652: Experiment explorer throws exception when showing average …
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) updated by Nicklas Nordborg
Description changed
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) updated by Nicklas Nordborg
Status, Owner changed
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) created by Nicklas Nordborg
Go to the Experiment explorer for an experiment. 1. Display more …
9:00 AM Changeset [3519] by Nicklas Nordborg
References #625. Fixed ClassCastException when using auto-detect and …
9:00 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3519]) References #625. Fixed ClassCastException when using …
8:48 AM Ticket #637 (Multiple plugin configurations gets mixed up.) closed by Nicklas Nordborg
fixed: (In [3518]) Fixes #637
8:48 AM Changeset [3518] by Nicklas Nordborg
Fixes #637

Jun 19, 2007:

4:20 PM Ticket #650 (Geometric mean) updated by Johan Enell
(In [3517]) References #650 Creates Ql and String from the parts …
4:20 PM Changeset [3517] by Johan Enell
References #650 Creates Ql and String from the parts already made in …
3:38 PM Ticket #650 (Geometric mean) updated by Nicklas Nordborg
Priority changed
3:38 PM Ticket #650 (Geometric mean) reopened by Nicklas Nordborg
The LN() and EXP() functions have different names in different …
3:34 PM Ticket #637 (Multiple plugin configurations gets mixed up.) updated by Nicklas Nordborg
Status, Owner changed
2:10 PM Changeset [3516] by Jari Häkkinen
Removing obsolete branch.
1:21 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Owner, Status changed
I can't find a good icon for inherited annotations... leaving this for now
1:05 PM Changeset [3515] by Nicklas Nordborg
Fixes #503: We now display annotation and protocol parameter values …
1:05 PM Ticket #503 (Display more info about items in Experiment overview) closed by Nicklas Nordborg
fixed: (In [3515]) Fixes #503: We now display annotation and protocol …
1:05 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3514]) Fixes #650
1:05 PM Changeset [3514] by Johan Enell
Fixes #650
11:58 AM Changeset [3513] by Nicklas Nordborg
Fixes #651
11:58 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) closed by Nicklas Nordborg
fixed: (In [3513]) Fixes #651
11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) updated by Nicklas Nordborg
Owner, Status changed
11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) created by Nicklas Nordborg
The experiment overview has options for validating that an item has …
11:34 AM Ticket #650 (Geometric mean) created by Johan Enell
Create an geometric mean expression in the query package. Use the …
11:31 AM Ticket #649 (Use correct avgerage method in Experiment Explorer) created by Johan Enell
Refs. #648 and #674 When formulas and raw data have specific average …
11:30 AM Changeset [3512] by Nicklas Nordborg
References #512. Exception should sometimes hide the menubar
11:30 AM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Nicklas Nordborg
(In [3512]) References #512. Exception should sometimes hide the menubar
11:29 AM Ticket #648 (Average method for formulas and extra values) created by Johan Enell
A user should be able to specify which average method to use. When you …
9:09 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Status changed
9:09 AM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Status changed
9:06 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
(In [3511]) References #470. Updated doc
9:06 AM Changeset [3511] by Nicklas Nordborg
References #470. Updated doc
8:56 AM Ticket #470 (Improve batch upload to support tar:ed files) closed by Nicklas Nordborg
fixed: (In [3510]) Fixes #470
8:56 AM Changeset [3510] by Nicklas Nordborg
Fixes #470
8:26 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Summary, Description changed

Jun 18, 2007:

5:52 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3509]) References #639. First non-tested non-generic version of …
5:52 PM Changeset [3509] by Peter Johansson
References #639. First non-tested non-generic version of the matrix …
5:01 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3508]) References #358. Use log4j properly in migration.
5:01 PM Changeset [3508] by Martin Svensson
References #358. Use log4j properly in migration.
1:51 PM Changeset [3507] by Nicklas Nordborg
References #470. Upload form can now handle file names with double …
1:51 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
(In [3507]) References #470. Upload form can now handle file names …
1:33 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Owner, Status changed
1:31 PM Changeset [3506] by Nicklas Nordborg
Show more characters from the name of recently used items
1:29 PM Tickets #622,​632,​643,​644,​645,​646,​647 batch updated by Nicklas Nordborg
fixed: (In [3505]) Fixes #632, #622, #643, #644, #645, #646, #647
1:29 PM Changeset [3505] by Nicklas Nordborg
Fixes #632, #622, #643, #644, #645, #646, #647
12:20 PM Ticket #647 (Base1PluginExecter fails when importing data) updated by Nicklas Nordborg
Owner, Status changed
12:20 PM Ticket #647 (Base1PluginExecter fails when importing data) created by Nicklas Nordborg
Used the Base1NullPlugin for testing. Get the following stacktrace …
11:46 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Description changed
Another related error when deleting temporary files: […]
11:45 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Description changed
Also missing permission on Formulas. Must have access to those since …
11:19 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) reopened by Nicklas Nordborg
The problem is not fixed: […]
11:13 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Summary changed
11:12 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Component, Milestone changed
It also lacks permission to read jobs. It now fails when exporting …
11:03 AM Ticket #646 (Base1PluginExecuter fails with ConnectionClosedException) updated by Nicklas Nordborg
Status changed
11:03 AM Ticket #646 (Base1PluginExecuter fails with ConnectionClosedException) created by Nicklas Nordborg
Trying to run a BASE 1 plugin on an experiment which has experimental …
10:58 AM Ticket #645 (Base1PluginExecuter fails with NumberFormatException) updated by Nicklas Nordborg
Owner, Status changed
10:48 AM Ticket #645 (Base1PluginExecuter fails with NumberFormatException) created by Nicklas Nordborg
I created a new configuration for the Base1PluginExecutor with the …
10:45 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
It doesn't have permission to read users either: […]
10:43 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Owner, Status changed
10:43 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) created by Nicklas Nordborg
The plug-in lacks permission on lots of items. Found so far: * Extra …
8:42 AM Ticket #643 (BioAssaySetExporter doesn't have permission to extra values) updated by Nicklas Nordborg
Owner, Status changed
8:42 AM Ticket #643 (BioAssaySetExporter doesn't have permission to extra values) created by Nicklas Nordborg
Trying to export data in BASEfile format from a bioassayset which has …
8:19 AM Ticket #632 (BioAssaySetExporter breaks if names of formulas, extra values, raw ...) updated by Nicklas Nordborg
Owner, Status changed
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