Timeline



Jun 27, 2007:

11:22 PM Changeset [3533] by Jari Häkkinen
Merged log:trunk#3433:3532 into the webservices branch.
10:33 PM Ticket #656 (Update release procedure) updated by Jari Häkkinen
Status changed
10:33 PM Ticket #656 (Update release procedure) created by Jari Häkkinen
4:39 PM Ticket #191 (Mobile number field in user info?) updated by Martin Svensson
Status, Owner changed
4:35 PM Ticket #358 (Better info from Migration tool) closed by Martin Svensson
fixed: (In [3532]) Fixes #358 Better info from migration tool
4:35 PM Changeset [3532] by Martin Svensson
Fixes #358 Better info from migration tool

Jun 26, 2007:

1:12 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3531]) References #358. Some changes on the log statements
1:12 PM Changeset [3531] by Martin Svensson
References #358. Some changes on the log statements

Jun 25, 2007:

10:05 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) created by Jari Häkkinen
illegal attempt to dereference collection …

Jun 23, 2007:

8:31 PM Ticket #654 (Batch deletion of reporters) created by Nicklas Nordborg
From a mail exchange with Phillippe: >> Just a note regarding deleting …

Jun 22, 2007:

11:22 AM Changeset [3530] by Johan Enell
some admin changes

Jun 21, 2007:

5:16 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3529]) References #358. Use log4j properly in migration. Updated …
5:16 PM Changeset [3529] by Martin Svensson
References #358. Use log4j properly in migration. Updated more …
4:20 PM Ticket #648 (Average method for formulas and extra values) closed by Johan Enell
fixed: (In [3528]) AverageMethod added Fixes #648
4:20 PM Changeset [3528] by Johan Enell
AverageMethod added Fixes #648
4:13 PM Ticket #648 (Average method for formulas and extra values) updated by Johan Enell
Status, Owner changed
1:19 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) closed by Nicklas Nordborg
fixed: (In [3527]) Fixes #642: Add method that finds an enumerated annotation …
1:19 PM Changeset [3527] by Nicklas Nordborg
Fixes #642: Add method that finds an enumerated annotation value that …
12:52 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) updated by Nicklas Nordborg
Status, Owner changed
12:50 PM Ticket #252 (Make the trashcan smarter when deleting items) closed by Nicklas Nordborg
fixed: (In [3526]) Fixes #252: Make the trashcan smarter when deleting items
12:50 PM Changeset [3526] by Nicklas Nordborg
Fixes #252: Make the trashcan smarter when deleting items
8:22 AM Ticket #653 (Implement DbControl.flush() method) created by Nicklas Nordborg
This method should flush queued changes to the database in the same …

Jun 20, 2007:

5:33 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) closed by Nicklas Nordborg
duplicate: I have now been able to reproduce this problem. It is triggered when a …
4:56 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3525]) References #358. Use log4j properly in migration. Updated …
4:56 PM Changeset [3525] by Martin Svensson
References #358. Use log4j properly in migration. Updated more files…
3:01 PM Changeset [3524] by Nicklas Nordborg
References #583: Send message at job completion only if user has …
3:01 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) updated by Nicklas Nordborg
(In [3524]) References #583: Send message at job completion only if …
2:48 PM Ticket #252 (Make the trashcan smarter when deleting items) updated by Nicklas Nordborg
Status changed
2:48 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by Nicklas Nordborg
Status changed
2:32 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) closed by Nicklas Nordborg
fixed: (In [3523]) Fixes #583: Allow changing the array design of a raw …
2:32 PM Changeset [3523] by Nicklas Nordborg
Fixes #583: Allow changing the array design of a raw bioasay when it …
1:28 PM Changeset [3522] by Johan Enell
Fixes #650 added some info to the geometricMean method
1:28 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3522]) Fixes #650 added some info to the geometricMean method
10:47 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) updated by Nicklas Nordborg
Status changed
10:44 AM Changeset [3521] by Nicklas Nordborg
Fixes #556: Add a favicon.ico
10:44 AM Ticket #556 (Add a favicon.ico) closed by Nicklas Nordborg
fixed: (In [3521]) Fixes #556: Add a favicon.ico
9:36 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) closed by Nicklas Nordborg
fixed: (In [3520]) Fixes #652: Experiment explorer throws exception when …
9:36 AM Changeset [3520] by Nicklas Nordborg
Fixes #652: Experiment explorer throws exception when showing average …
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) updated by Nicklas Nordborg
Description changed
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) updated by Nicklas Nordborg
Status, Owner changed
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) created by Nicklas Nordborg
Go to the Experiment explorer for an experiment. 1. Display more …
9:00 AM Changeset [3519] by Nicklas Nordborg
References #625. Fixed ClassCastException when using auto-detect and …
9:00 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3519]) References #625. Fixed ClassCastException when using …
8:48 AM Ticket #637 (Multiple plugin configurations gets mixed up.) closed by Nicklas Nordborg
fixed: (In [3518]) Fixes #637
8:48 AM Changeset [3518] by Nicklas Nordborg
Fixes #637

Jun 19, 2007:

4:20 PM Ticket #650 (Geometric mean) updated by Johan Enell
(In [3517]) References #650 Creates Ql and String from the parts …
4:20 PM Changeset [3517] by Johan Enell
References #650 Creates Ql and String from the parts already made in …
3:38 PM Ticket #650 (Geometric mean) updated by Nicklas Nordborg
Priority changed
3:38 PM Ticket #650 (Geometric mean) reopened by Nicklas Nordborg
The LN() and EXP() functions have different names in different …
3:34 PM Ticket #637 (Multiple plugin configurations gets mixed up.) updated by Nicklas Nordborg
Status, Owner changed
2:10 PM Changeset [3516] by Jari Häkkinen
Removing obsolete branch.
1:21 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Owner, Status changed
I can't find a good icon for inherited annotations... leaving this for now
1:05 PM Changeset [3515] by Nicklas Nordborg
Fixes #503: We now display annotation and protocol parameter values …
1:05 PM Ticket #503 (Display more info about items in Experiment overview) closed by Nicklas Nordborg
fixed: (In [3515]) Fixes #503: We now display annotation and protocol …
1:05 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3514]) Fixes #650
1:05 PM Changeset [3514] by Johan Enell
Fixes #650
11:58 AM Changeset [3513] by Nicklas Nordborg
Fixes #651
11:58 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) closed by Nicklas Nordborg
fixed: (In [3513]) Fixes #651
11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) updated by Nicklas Nordborg
Status, Owner changed
11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) created by Nicklas Nordborg
The experiment overview has options for validating that an item has …
11:34 AM Ticket #650 (Geometric mean) created by Johan Enell
Create an geometric mean expression in the query package. Use the …
11:31 AM Ticket #649 (Use correct avgerage method in Experiment Explorer) created by Johan Enell
Refs. #648 and #674 When formulas and raw data have specific average …
11:30 AM Changeset [3512] by Nicklas Nordborg
References #512. Exception should sometimes hide the menubar
11:30 AM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Nicklas Nordborg
(In [3512]) References #512. Exception should sometimes hide the menubar
11:29 AM Ticket #648 (Average method for formulas and extra values) created by Johan Enell
A user should be able to specify which average method to use. When you …
9:09 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Status changed
9:09 AM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Status changed
9:06 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
(In [3511]) References #470. Updated doc
9:06 AM Changeset [3511] by Nicklas Nordborg
References #470. Updated doc
8:56 AM Ticket #470 (Improve batch upload to support tar:ed files) closed by Nicklas Nordborg
fixed: (In [3510]) Fixes #470
8:56 AM Changeset [3510] by Nicklas Nordborg
Fixes #470
8:26 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Summary, Description changed

Jun 18, 2007:

5:52 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3509]) References #639. First non-tested non-generic version of …
5:52 PM Changeset [3509] by Peter Johansson
References #639. First non-tested non-generic version of the matrix …
5:01 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3508]) References #358. Use log4j properly in migration.
5:01 PM Changeset [3508] by Martin Svensson
References #358. Use log4j properly in migration.
1:51 PM Changeset [3507] by Nicklas Nordborg
References #470. Upload form can now handle file names with double …
1:51 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
(In [3507]) References #470. Upload form can now handle file names …
1:33 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Owner, Status changed
1:31 PM Changeset [3506] by Nicklas Nordborg
Show more characters from the name of recently used items
1:29 PM Tickets #622,​632,​643,​644,​645,​646,​647 batch updated by Nicklas Nordborg
fixed: (In [3505]) Fixes #632, #622, #643, #644, #645, #646, #647
1:29 PM Changeset [3505] by Nicklas Nordborg
Fixes #632, #622, #643, #644, #645, #646, #647
12:20 PM Ticket #647 (Base1PluginExecter fails when importing data) updated by Nicklas Nordborg
Owner, Status changed
12:20 PM Ticket #647 (Base1PluginExecter fails when importing data) created by Nicklas Nordborg
Used the Base1NullPlugin for testing. Get the following stacktrace …
11:46 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Description changed
Another related error when deleting temporary files: […]
11:45 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Description changed
Also missing permission on Formulas. Must have access to those since …
11:19 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) reopened by Nicklas Nordborg
The problem is not fixed: […]
11:13 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Summary changed
11:12 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Milestone, Component changed
It also lacks permission to read jobs. It now fails when exporting …
11:03 AM Ticket #646 (Base1PluginExecuter fails with ConnectionClosedException) updated by Nicklas Nordborg
Status changed
11:03 AM Ticket #646 (Base1PluginExecuter fails with ConnectionClosedException) created by Nicklas Nordborg
Trying to run a BASE 1 plugin on an experiment which has experimental …
10:58 AM Ticket #645 (Base1PluginExecuter fails with NumberFormatException) updated by Nicklas Nordborg
Owner, Status changed
10:48 AM Ticket #645 (Base1PluginExecuter fails with NumberFormatException) created by Nicklas Nordborg
I created a new configuration for the Base1PluginExecutor with the …
10:45 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
It doesn't have permission to read users either: […]
10:43 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) updated by Nicklas Nordborg
Status, Owner changed
10:43 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) created by Nicklas Nordborg
The plug-in lacks permission on lots of items. Found so far: * Extra …
8:42 AM Ticket #643 (BioAssaySetExporter doesn't have permission to extra values) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #643 (BioAssaySetExporter doesn't have permission to extra values) created by Nicklas Nordborg
Trying to export data in BASEfile format from a bioassayset which has …
8:19 AM Ticket #632 (BioAssaySetExporter breaks if names of formulas, extra values, raw ...) updated by Nicklas Nordborg
Owner, Status changed

Jun 15, 2007:

1:21 PM Changeset [3504] by Nicklas Nordborg
Fixes #512
1:21 PM Ticket #512 (Feature request: switch user stays on same page if possible) closed by Nicklas Nordborg
fixed: (In [3504]) Fixes #512
11:45 AM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Nicklas Nordborg
Owner, Status changed
11:41 AM Changeset [3503] by Nicklas Nordborg
Fixes #628
11:41 AM Ticket #628 (Create update script that fixes incorrect file sizes) closed by Nicklas Nordborg
fixed: (In [3503]) Fixes #628
11:41 AM Changeset [3502] by Nicklas Nordborg
References #518. Fixed compilation warning from Hibernate. Added …
11:41 AM Ticket #518 (Database version in about view) updated by Nicklas Nordborg
(In [3502]) References #518. Fixed compilation warning from Hibernate. …
11:39 AM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) updated by Nicklas Nordborg
Priority changed
11:39 AM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) updated by Nicklas Nordborg
Milestone, Component changed
11:38 AM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) created by Nicklas Nordborg
Dominic Oyeniran wrote: > Having an annotation type cell type with …
11:16 AM Changeset [3501] by Johan Enell
Merged log:branches/2.3.1#3431:3486 trunk.
9:47 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) closed by Jari Häkkinen
worksforme: The R/BASE connectivity is accomplished as one of the clients at …
9:47 AM Changeset [3500] by Nicklas Nordborg
References #578. Changed to load the names of items by default
9:47 AM Ticket #578 (Update the History function to remember more than one item of each type) updated by Nicklas Nordborg
(In [3500]) References #578. Changed to load the names of items by default
9:42 AM Changeset [3499] by Nicklas Nordborg
Fixes #640
9:42 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) closed by Nicklas Nordborg
fixed: (In [3499]) Fixes #640
9:40 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) updated by Nicklas Nordborg
Status, Owner changed
9:40 AM Changeset [3498] by Nicklas Nordborg
Fixes #369
9:40 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) closed by Nicklas Nordborg
fixed: (In [3498]) Fixes #369
9:39 AM Ticket #641 (Link to non-existing image in annotate.jsp) closed by Nicklas Nordborg
fixed: (In [3497]) Fixes #641
9:39 AM Changeset [3497] by Nicklas Nordborg
Fixes #641
9:38 AM Ticket #641 (Link to non-existing image in annotate.jsp) created by Nicklas Nordborg
There is a link to /images/annotation.gif which doesn't exists. The …
9:20 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) created by Nicklas Nordborg
Go to any page and check "View source...". The code for the recent …
8:51 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by Nicklas Nordborg
Status changed

Jun 14, 2007:

9:01 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
Status changed
9:01 PM Ticket #639 (exportPureMatrix method) created by Peter Johansson
It would be useful to have a method exporting a BioAssaySet to pure …
4:58 PM Changeset [3496] by Martin Svensson
References #358. Started to implement a log-structure in the migration …
4:58 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
(In [3496]) References #358. Started to implement a log-structure in …
3:35 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
3:28 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
2:37 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
Priority changed
2:36 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3495]) References #625. Major features are now in place. It's a …
2:36 PM Changeset [3495] by Nicklas Nordborg
References #625. Major features are now in place. It's a bit tricky to …
2:11 PM Milestone BASE 2.3.1 completed
Bug fixes for the 2.3 release Revision log: log:branches/2.3.1@3431:3494
1:35 PM Changeset [3494] by Jari Häkkinen
Tagging version 2.3.1
12:25 PM Changeset [3493] by Nicklas Nordborg
Fixes #566
12:25 PM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) closed by Nicklas Nordborg
fixed: (In [3493]) Fixes #566
11:02 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) updated by Nicklas Nordborg
Status, Owner changed
10:58 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Priority changed
10:44 AM Changeset [3492] by Nicklas Nordborg
Fixes #578
10:44 AM Ticket #578 (Update the History function to remember more than one item of each type) closed by Nicklas Nordborg
fixed: (In [3492]) Fixes #578
10:09 AM Changeset [3491] by Peter Johansson
added Date property
9:54 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Martin Svensson
(In [3490]) References #426 Documentation about setting the user …
9:54 AM Changeset [3490] by Martin Svensson
References #426 Documentation about setting the user preferences for …

Jun 13, 2007:

8:30 PM Changeset [3489] by Nicklas Nordborg
Removed xref links from web client help text version
8:24 PM Changeset [3488] by Nicklas Nordborg
Create missing directory for appendixes
7:59 PM Ticket #637 (Multiple plugin configurations gets mixed up.) updated by Nicklas Nordborg
Comment to developers: The overwriting problem is caused by the …
7:56 PM Changeset [3487] by Peter Johansson
added end-of-line style property and replaced don't and similiar with …
7:39 PM Ticket #637 (Multiple plugin configurations gets mixed up.) updated by Nicklas Nordborg
Milestone, Summary changed
It is not supported to start more than one plug-in/job configuration …
7:16 PM Ticket #638 (Read raw data headers from CEL files) closed by Nicklas Nordborg
fixed: Fixed in [3483]
7:15 PM Ticket #638 (Read raw data headers from CEL files) created by Nicklas Nordborg
3:34 PM Changeset [3486] by Jari Häkkinen
Bumped version number.
3:33 PM Ticket #624 (Update copyright in 'About' button) closed by Jari Häkkinen
fixed: (In [3485]) Fixes #624
3:33 PM Changeset [3485] by Jari Häkkinen
Fixes #624
2:48 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) closed by Nicklas Nordborg
fixed: (In [3484]) Fixes #627
2:48 PM Changeset [3484] by Nicklas Nordborg
Fixes #627
2:41 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
Description changed
2:25 PM Ticket #578 (Update the History function to remember more than one item of each type) updated by Nicklas Nordborg
Status, Priority, Owner changed
2:25 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) updated by Nicklas Nordborg
Owner, Status changed
2:24 PM Changeset [3483] by Nicklas Nordborg
Read raw data headers from CEL file and put in RawBioAssay
2:02 PM Ticket #358 (Better info from Migration tool) updated by Martin Svensson
Status, Owner changed
1:54 PM Ticket #435 (A check for reporter information is needed when adding/using ...) closed by Nicklas Nordborg
fixed: (In [3482]) Fixes #435.
1:54 PM Changeset [3482] by Nicklas Nordborg
Fixes #435.
1:41 PM Changeset [3481] by Martin Svensson
Fixes #426 Option to automatically delete a (import/export) job once …
1:41 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) closed by Martin Svensson
fixed: (In [3481]) Fixes #426 Option to automatically delete a …
1:16 PM Ticket #637 (Multiple plugin configurations gets mixed up.) created by base
Scenario: 1) Start a new plugin configuration of …
12:39 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Martin Svensson
(In [3480]) References #426 Option to flag an import/export job to be …
12:39 PM Changeset [3480] by Martin Svensson
References #426 Option to flag an import/export job to be removed, …

Jun 12, 2007:

5:23 PM Changeset [3479] by Peter Johansson
fixed some typos and grammar
3:35 PM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by Nicklas Nordborg
Status changed
2:47 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) closed by Nicklas Nordborg
fixed: (In [3478]) Fixes #634
2:47 PM Changeset [3478] by Nicklas Nordborg
Fixes #634
2:16 PM Changeset [3477] by Nicklas Nordborg
Removed call to deprecated method
2:08 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) updated by Nicklas Nordborg
Component changed
2:07 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) updated by Nicklas Nordborg
Summary, Status changed
It seems like all plug-ins except the filter plug-in doesn't attach …
1:56 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) closed by Nicklas Nordborg
fixed: (In [3476]) Fixes #372
1:56 PM Changeset [3476] by Nicklas Nordborg
Fixes #372
11:27 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Martin Svensson
Status, Owner changed
11:18 AM Changeset [3475] by Martin Svensson
Fixes #635 The exception was thrown from the index.jsp page in …
11:18 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) closed by Martin Svensson
fixed: (In [3475]) Fixes #635 The exception was thrown from the index.jsp …
8:08 AM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by Nicklas Nordborg
Owner, Status changed

Jun 11, 2007:

2:27 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) closed by Nicklas Nordborg
fixed: (In [3474]) Fixes #481
2:27 PM Changeset [3474] by Nicklas Nordborg
Fixes #481
2:11 PM Changeset [3473] by Nicklas Nordborg
Removed strange assignment
2:06 PM Ticket #469 (Improve error handling of invalid values in import plugins) closed by Nicklas Nordborg
fixed: (In [3472]) Fixes #469.
2:06 PM Changeset [3472] by Nicklas Nordborg
Fixes #469.
1:19 PM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) updated by Martin Svensson
Status changed
9:45 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) updated by Martin Svensson
Description, Summary changed
9:44 AM Tickets #573,​574 batch updated by Nicklas Nordborg
fixed: (In [3471]) Fixes #574 and #573.
9:44 AM Changeset [3471] by Nicklas Nordborg
Fixes #574 and #573.
9:34 AM Ticket #636 (Kill a running job) created by Johan Enell
It should be possible for a user to kill a running job. The core sends …
9:23 AM Ticket #479 (BioAssaySetExport should allow immediate download.) closed by Martin Svensson
fixed: (In [3470]) Fixes #479 BioAssaySetExport should allow immediate download.
9:23 AM Changeset [3470] by Martin Svensson
Fixes #479 BioAssaySetExport should allow immediate download.
9:21 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) created by Martin Svensson
The export seems to work and the file is downloaded but there is an …

Jun 8, 2007:

4:54 PM Tickets #606,​622 batch updated by Johan Enell
fixed: (In [3469]) Fixes #606 Fixes #622
4:54 PM Changeset [3469] by Johan Enell
Fixes #606 Fixes #622
2:29 PM Tickets #469,​573,​574 batch updated by Nicklas Nordborg
(In [3468]) References #574, #573 and #469. Created a simple test case …
2:29 PM Changeset [3468] by Nicklas Nordborg
References #574, #573 and #469. Created a simple test case with dirty …
1:14 PM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by Martin Svensson
Milestone, Version changed
12:18 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) created by Johan Enell
From the bioassayset view I press the bioassays tab. I click run …
11:43 AM Ticket #469 (Improve error handling of invalid values in import plugins) updated by Nicklas Nordborg
Description, Status, Owner changed
11:41 AM Ticket #574 (Handle database differences with case sensitivity) updated by Nicklas Nordborg
Priority changed
11:41 AM Ticket #574 (Handle database differences with case sensitivity) updated by Nicklas Nordborg
Status changed
11:40 AM Ticket #573 (Trim whitespace when checking for unique values) updated by Nicklas Nordborg
Status, Priority, Description changed
11:39 AM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by Nicklas Nordborg
Status, Owner changed
11:29 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) closed by Nicklas Nordborg
fixed: (In [3467]) Fixes #81
11:29 AM Changeset [3467] by Nicklas Nordborg
Fixes #81
8:40 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) updated by Nicklas Nordborg
Status changed
8:37 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) closed by Nicklas Nordborg
fixed: (In [3466]) Fixes #446
8:37 AM Changeset [3466] by Nicklas Nordborg
Fixes #446

Jun 7, 2007:

2:29 PM Ticket #606 (Base1PluginExecuter plugin directory) updated by Johan Enell
Status changed
2:18 PM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) updated by Johan Enell
Status changed
1:50 PM Ticket #630 (Check quota before uploading a new file) closed by Nicklas Nordborg
fixed: (In [3465]) Fixes #630.
1:50 PM Changeset [3465] by Nicklas Nordborg
Fixes #630.
12:15 PM Ticket #633 (Show warning when moving files offline) closed by Nicklas Nordborg
fixed: (In [3464]) Fixes #633
12:15 PM Changeset [3464] by Nicklas Nordborg
Fixes #633
12:03 PM Ticket #633 (Show warning when moving files offline) updated by Nicklas Nordborg
Status changed
12:03 PM Ticket #633 (Show warning when moving files offline) created by Nicklas Nordborg
In the current implementation the files are moved immediately.
12:01 PM Ticket #630 (Check quota before uploading a new file) updated by Nicklas Nordborg
Status, Owner changed
12:01 PM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) updated by Nicklas Nordborg
Status, Owner changed
12:00 PM Ticket #620 (Add 'write protected' property to File) closed by Nicklas Nordborg
fixed: In [3463]
11:56 AM Changeset [3463] by Nicklas Nordborg
Fxies #620
10:25 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Johan Enell
fixed: (In [3462]) Fixes #604
10:25 AM Changeset [3462] by Johan Enell
Fixes #604
10:12 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) reopened by Johan Enell
The chars \r\n in the description text from the base1 configfile …
9:28 AM Ticket #620 (Add 'write protected' property to File) updated by Nicklas Nordborg
Status changed
9:28 AM Changeset [3461] by Nicklas Nordborg
Remvoed unused imports
9:27 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
(In [3460]) References #558. All places that used …
9:27 AM Changeset [3460] by Nicklas Nordborg
References #558. All places that used Session.connection(), which has …
9:17 AM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by Martin Svensson
Status, Owner changed
8:57 AM Ticket #567 (jdk6 (1.6.0) compatibility) closed by Nicklas Nordborg
fixed: (In [3459]) Fixes #567
8:57 AM Changeset [3459] by Nicklas Nordborg
Fixes #567
8:55 AM Changeset [3458] by Martin Svensson
Two minor fixes: Added database server's name and version on the …
8:51 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) closed by Martin Svensson
fixed: (In [3457]) Fixes #610 Offline files are counted in the total quota in …
8:51 AM Changeset [3457] by Martin Svensson
Fixes #610 Offline files are counted in the total quota in disk usage …
12:46 AM Ticket #564 (Add support for filtering against null values in JEP) closed by Nicklas Nordborg
fixed: (In [3456]) Fixes #564. It is now possible to use: ch(1) == null
12:46 AM Changeset [3456] by Nicklas Nordborg
Fixes #564. It is now possible to use: ch(1) == null or {{{ch(1) …
12:21 AM Changeset [3455] by Nicklas Nordborg
Fixed LazyInitialisation problem when using the 'Copy transformation' …

Jun 6, 2007:

11:24 PM Ticket #616 (AnyToAny.exists()) closed by Nicklas Nordborg
fixed: (In [3454]) Fixes #616
11:24 PM Changeset [3454] by Nicklas Nordborg
Fixes #616

Jun 5, 2007:

3:34 PM Ticket #567 (jdk6 (1.6.0) compatibility) updated by Nicklas Nordborg
Status changed
2:56 PM Ticket #561 (Filter on date) closed by Nicklas Nordborg
fixed: (In [3453]) Fixes #561
2:56 PM Changeset [3453] by Nicklas Nordborg
Fixes #561
2:08 PM Ticket #561 (Filter on date) updated by Nicklas Nordborg
Status, Owner changed
2:07 PM Ticket #564 (Add support for filtering against null values in JEP) updated by Nicklas Nordborg
Priority changed
2:06 PM Ticket #469 (Improve error handling of invalid values in import plugins) updated by Nicklas Nordborg
Priority changed
2:06 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Nicklas Nordborg
Priority changed
2:06 PM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) updated by Nicklas Nordborg
Priority changed
2:05 PM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) closed by Nicklas Nordborg
duplicate: #626
2:04 PM Ticket #620 (Add 'write protected' property to File) updated by Nicklas Nordborg
Priority changed
2:04 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by Nicklas Nordborg
Priority changed
2:03 PM Ticket #561 (Filter on date) updated by Nicklas Nordborg
Priority changed
2:03 PM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Priority changed
2:02 PM Ticket #470 (Improve batch upload to support tar:ed files) updated by Nicklas Nordborg
Priority changed
2:02 PM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) updated by Nicklas Nordborg
Priority changed
2:02 PM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by Nicklas Nordborg
Priority changed
2:01 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Nicklas Nordborg
Priority changed
2:01 PM Ticket #191 (Mobile number field in user info?) updated by Nicklas Nordborg
Priority changed
2:01 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Priority changed
2:00 PM Ticket #628 (Create update script that fixes incorrect file sizes) updated by Nicklas Nordborg
This must be done after 2.3.1 has been merged with the trunk. …
1:58 PM Tickets #558,​568 batch updated by Nicklas Nordborg
fixed: (In [3452]) Fixes #558 and #568
1:58 PM Changeset [3452] by Nicklas Nordborg
Fixes #558 and #568
12:57 PM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
Status changed
12:47 PM Ticket #568 (Update MySQL JDBC driver to 5.0.6 when it is released) updated by Nicklas Nordborg
Status changed
12:21 PM Ticket #632 (BioAssaySetExporter breaks if names of formulas, extra values, raw ...) created by Nicklas Nordborg
The BioAssaySetExporter uses the name of the following items to …
12:07 PM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) closed by Nicklas Nordborg
fixed: (In [3451]) Fixes #588
12:07 PM Changeset [3451] by Nicklas Nordborg
Fixes #588
11:25 AM Changeset [3450] by Martin Svensson
Fixes #518 Database version in about view
11:25 AM Ticket #518 (Database version in about view) closed by Martin Svensson
fixed: (In [3450]) Fixes #518 Database version in about view
11:07 AM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) created by Johan Enell
The database update should remove all AnyToAny links created by …
9:59 AM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) updated by Nicklas Nordborg
Status, Owner changed
9:56 AM Changeset [3449] by Nicklas Nordborg
Fixes #572
9:56 AM Ticket #572 (genepix raw data importer config typo) closed by Nicklas Nordborg
fixed: (In [3449]) Fixes #572
9:38 AM Ticket #485 (A user's group membership is not listed.) closed by Nicklas Nordborg
worksforme
9:36 AM Ticket #582 ('Removed' option doesn't work when listing project items) closed by Nicklas Nordborg
fixed: Fixed in [3448]
9:34 AM Changeset [3448] by Nicklas Nordborg
8:46 AM Ticket #582 ('Removed' option doesn't work when listing project items) updated by Nicklas Nordborg
Actaully, none of the options in the preset selector are working.
8:39 AM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) closed by Nicklas Nordborg
fixed: (In [3447]) Fixes #629. The 'removed' option has been removed from the …
8:39 AM Changeset [3447] by Nicklas Nordborg
Fixes #629. The 'removed' option has been removed from the preset …
8:12 AM Ticket #518 (Database version in about view) updated by Martin Svensson
Status changed
7:52 AM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) updated by Nicklas Nordborg
Priority changed
7:51 AM Ticket #582 ('Removed' option doesn't work when listing project items) updated by Nicklas Nordborg
Priority, Status changed
7:51 AM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) updated by Nicklas Nordborg
Status, Owner changed

Jun 4, 2007:

7:43 PM Ticket #485 (A user's group membership is not listed.) updated by Nicklas Nordborg
Milestone changed
7:41 PM Ticket #572 (genepix raw data importer config typo) updated by Nicklas Nordborg
Milestone, Component changed
7:40 PM Ticket #610 (Offline files are counted in the total quota in disk usage overview) updated by Nicklas Nordborg
Description changed
7:38 PM Ticket #630 (Check quota before uploading a new file) created by Nicklas Nordborg
It is annoying to first upload and then get the error message. Note …
4:24 PM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) created by Martin Svensson
There is no effect to have the 'Removed' option unchecked in …
3:35 PM Ticket #510 (typos on Trac Developer Information) closed by Jari Häkkinen
fixed
3:34 PM DeveloperInformation edited by Jari Häkkinen
Fixes ticket:510 (diff)
3:33 PM Ticket #628 (Create update script that fixes incorrect file sizes) updated by Nicklas Nordborg
Owner, Status changed
3:32 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) closed by Nicklas Nordborg
fixed: (In [3446]) Fixes #581
3:32 PM Changeset [3446] by Nicklas Nordborg
Fixes #581
3:26 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) updated by Nicklas Nordborg
Status changed
3:25 PM Ticket #590 (Create test program for BioAsssaySetExporter) updated by Nicklas Nordborg
Milestone changed
3:24 PM Changeset [3445] by Nicklas Nordborg
Fixes #604
3:24 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Nicklas Nordborg
fixed: (In [3445]) Fixes #604
3:24 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) updated by Nicklas Nordborg
Status, Owner, Summary changed
3:07 PM Changeset [3444] by Nicklas Nordborg
Fixes #575. Additional fix is needed in the trunk. See #628
3:07 PM Tickets #575,​628 batch updated by Nicklas Nordborg
(In [3444]) Fixes #575. Additional fix is needed in the trunk. See #628
3:05 PM Ticket #628 (Create update script that fixes incorrect file sizes) created by Nicklas Nordborg
Bug #575 may have created files with incorrect size in the database. …
2:48 PM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) closed by Martin Svensson
fixed: (In [3443]) Fixes #609 'Delete', 'Restore' and 'Share' doesn't work …
2:48 PM Changeset [3443] by Martin Svensson
Fixes #609 'Delete', 'Restore' and 'Share' doesn't work when listing …
2:31 PM Changeset [3442] by Nicklas Nordborg
Fixes #576.
2:31 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) closed by Nicklas Nordborg
fixed: (In [3442]) Fixes #576.
2:24 PM DownloadPage edited by Jari Häkkinen
Updated installation doc links. (diff)
2:23 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) updated by Nicklas Nordborg
Owner, Status changed
2:06 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) created by Jari Häkkinen
Relates to ticket:578
2:03 PM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) updated by Jari Häkkinen
Milestone changed
2:01 PM Ticket #618 (Write inherited annotations in biomaterials section) closed by Jari Häkkinen
fixed
1:59 PM Ticket #626 (Remove base1executor any to any links) created by Jari Häkkinen
1:57 PM Ticket #624 (Update copyright in 'About' button) updated by Jari Häkkinen
Owner, Status changed
1:57 PM Ticket #621 (Write 'Plate' section) updated by Jari Häkkinen
Milestone changed
1:57 PM Ticket #618 (Write inherited annotations in biomaterials section) updated by Jari Häkkinen
Milestone changed
1:56 PM Ticket #617 (Write plate management in array LIMS) updated by Jari Häkkinen
Milestone changed
1:55 PM Ticket #615 (Write 'Installing job agents' section) updated by Jari Häkkinen
Status, Owner changed
1:54 PM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) updated by Jari Häkkinen
Milestone changed
1:53 PM Ticket #611 (Improvements of Trashcan) updated by Jari Häkkinen
Description changed
1:49 PM Ticket #600 (Write "Appendix: Other configuration files") updated by Jari Häkkinen
Milestone changed
1:49 PM Ticket #599 (Write "Appendix: migrate.properties reference") updated by Jari Häkkinen
Milestone changed
1:49 PM Ticket #597 (Read "Appendix: web.xml reference") updated by Jari Häkkinen
Milestone changed
1:49 PM Ticket #596 (Read "Appendix: raw-data-types.xml reference") updated by Jari Häkkinen
Milestone changed
1:48 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") updated by Jari Häkkinen
Milestone changed
1:47 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) updated by Jari Häkkinen
Milestone changed
1:41 PM Ticket #582 ('Removed' option doesn't work when listing project items) updated by Jari Häkkinen
Milestone changed
1:40 PM Ticket #578 (Update the History function to remember more than one item of each type) updated by Jari Häkkinen
Milestone, Version, Summary changed
1:32 PM Changeset [3441] by Nicklas Nordborg
Fixes #587.
1:32 PM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) closed by Nicklas Nordborg
fixed: (In [3441]) Fixes #587.
12:12 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by Jari Häkkinen
Description changed
12:12 PM Ticket #252 (Make the trashcan smarter when deleting items) updated by Jari Häkkinen
Description changed
12:07 PM Ticket #573 (Trim whitespace when checking for unique values) updated by Jari Häkkinen
Description changed
12:06 PM Ticket #574 (Handle database differences with case sensitivity) updated by Jari Häkkinen
Description changed
12:04 PM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) updated by Jari Häkkinen
Milestone changed
12:03 PM Ticket #568 (Update MySQL JDBC driver to 5.0.6 when it is released) updated by Jari Häkkinen
Priority changed
12:02 PM Ticket #567 (jdk6 (1.6.0) compatibility) updated by Jari Häkkinen
Priority changed
11:52 AM Ticket #560 (Deleting reporters) updated by Jari Häkkinen
Milestone changed
11:50 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Jari Häkkinen
Priority, Version changed
11:49 AM Ticket #554 (Write "Core developer reference.") updated by Jari Häkkinen
Milestone changed
11:49 AM Ticket #553 (Read "Javadoc" section) updated by Jari Häkkinen
Milestone changed
11:49 AM Ticket #552 (Write "API overview" section) updated by Jari Häkkinen
Milestone changed
11:49 AM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) updated by Jari Häkkinen
Milestone changed
11:49 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #532 (Read "Jobs" section) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #524 (Read "Overview of user documentation" section) updated by Jari Häkkinen
Milestone changed
11:46 AM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) updated by Jari Häkkinen
Milestone changed
11:46 AM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) closed by Jari Häkkinen
duplicate
11:44 AM Ticket #518 (Database version in about view) updated by Jari Häkkinen
Milestone changed
11:43 AM Ticket #514 (Change permissions in Power User) updated by Jari Häkkinen
Status, Owner, Milestone changed
We should think this through.
11:35 AM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Jari Häkkinen
Milestone changed
11:34 AM Ticket #510 (typos on Trac Developer Information) updated by Jari Häkkinen
Milestone, Status, Owner changed
11:31 AM Ticket #498 (Move Array batches on Array design view page) updated by Jari Häkkinen
relates to ticket:360
11:30 AM Ticket #492 (Web services) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #486 (Import raw data from the Illumina platform) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #450 (Plugin for importing Imagene raw data) updated by Jari Häkkinen
Milestone changed
11:27 AM Ticket #411 (Extending compressed file support and storage) updated by Jari Häkkinen
Milestone changed
11:18 AM Ticket #451 (Zipped download) updated by Jari Häkkinen
Milestone changed
11:14 AM Ticket #450 (Plugin for importing Imagene raw data) updated by Jari Häkkinen
Milestone changed
11:13 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) updated by Jari Häkkinen
Milestone, Owner, Status changed
11:11 AM Ticket #436 (Create extension system for the web application) updated by Jari Häkkinen
Milestone changed
11:10 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Jari Häkkinen
Summary changed
11:06 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by Jari Häkkinen
Milestone changed
10:57 AM Ticket #337 (Tab2Mage export plugin) updated by Jari Häkkinen
Status, Owner changed
Dominic is working on this.
10:57 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Dominic is working on this.
10:57 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Milestone changed
10:56 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Status, Owner changed
10:55 AM Ticket #257 (Fix the Jep.nodeToExpression method) updated by Jari Häkkinen
Milestone changed
10:53 AM Ticket #191 (Mobile number field in user info?) updated by Jari Häkkinen
Description, Version, Priority, Milestone changed
10:48 AM Ticket #153 (More progress from importer plug-ins) updated by Jari Häkkinen
Milestone changed
10:47 AM Ticket #153 (More progress from importer plug-ins) closed by Jari Häkkinen
wontfix: The issue has evolved away.
10:46 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) closed by Jari Häkkinen
wontfix
10:43 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) updated by Jari Häkkinen
Version, Milestone changed
9:35 AM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) updated by Nicklas Nordborg
Status, Owner changed
9:31 AM Changeset [3440] by Nicklas Nordborg
References #613. Must also call done() when unpacking zipped files. …
9:31 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
(In [3440]) References #613. Must also call done() when unpacking …
9:22 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
Description changed
9:22 AM Changeset [3439] by Nicklas Nordborg
Fixes #613.
9:22 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) closed by Nicklas Nordborg
fixed: (In [3439]) Fixes #613.
9:14 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3438]) References #625. Added some infrastructure and moved …
9:14 AM Changeset [3438] by Nicklas Nordborg
References #625. Added some infrastructure and moved context checking …
9:05 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
Status changed
8:50 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) created by Nicklas Nordborg
When selecing a plug-in the current list of warnings from other, …
8:11 AM Ticket #575 (Spot image generator creates file with invalid size in database) reopened by Nicklas Nordborg
Reopens this ticket because we must also fix the incorrect file size …

Jun 1, 2007:

9:40 PM DownloadPage edited by Jari Häkkinen
(diff)
10:13 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) updated by Martin Svensson
Owner, Status changed
9:49 AM DownloadPage edited by Jari Häkkinen
2.3 released. (diff)
8:36 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
Owner, Status changed
8:35 AM Changeset [3437] by Nicklas Nordborg
Fixes #614: Cannot edit a plug-in definition when the plug-in jar is …
8:35 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) closed by Nicklas Nordborg
fixed: (In [3437]) Fixes #614: Cannot edit a plug-in definition when the …
8:25 AM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) updated by Martin Svensson
Owner, Status changed
8:19 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) updated by Nicklas Nordborg
Component changed
8:19 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) updated by Nicklas Nordborg
Status changed
8:15 AM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3436]) Fixes #575: Spot image generator creates file with invalid …
8:15 AM Changeset [3436] by Nicklas Nordborg
Fixes #575: Spot image generator creates file with invalid size in database
8:04 AM Changeset [3435] by Nicklas Nordborg
Changed version number to 2.3.1pre
12:37 AM Changeset [3434] by Jari Häkkinen
Bumped version number.
12:35 AM Changeset [3433] by Jari Häkkinen
Merged log:trunk#3267:3432 into the webservices branch.
12:25 AM Changeset [3432] by Jari Häkkinen
Removed carriage return characters.

May 31, 2007:

4:08 PM Milestone BASE 2.3 completed
Documentation release.
4:07 PM Tickets #294,​516,​517,​524,​525,​526,​527,​532,​533,​534,​540,​542,​543,​545,​547,​548,​549,​551,​553,​555,​557,​558,​565,​568,​584,​589,​594,​595,​596,​598,​601,​333,​337,​479,​521,​535,​536,​537,​561,​567,​570,​579,​580,​591,​603,​620,​353,​358,​372,​411,​426,​435,​446,​469,​481,​492,​500,​515,​522,​523,​528,​546,​564,​566,​573,​574,​586,​602,​146,​326,​375,​470,​485,​503,​504,​518,​529,​538,​544,​560,​571,​577,​582,​583,​593,​597,​599,​600,​605,​611,​615,​23,​132,​133,​134,​136,​212,​252,​349,​480,​498,​550,​552,​554,​556,​572,​592,​607,​616,​619 batch updated by Jari Häkkinen
Milestone changed
Milestone BASE 2.4 deleted
4:05 PM Tickets #516,​517,​524,​525,​526,​527,​532,​533,​534,​540,​542,​543,​545,​547,​548,​549,​551,​553,​555,​557,​565,​584,​589,​594,​595,​596,​598,​601,​333,​521,​535,​536,​537,​570,​579,​580,​603,​500,​515,​522,​523,​528,​546,​586,​602,​146,​529,​538,​544,​593,​597,​599,​600,​605,​615,​23,​132,​133,​134,​136,​212,​349,​550,​552,​554,​592,​607,​619 batch updated by Jari Häkkinen
Milestone changed
Milestone BASE 2.3 deleted
3:54 PM Ticket #624 (Update copyright in 'About' button) created by Jari Häkkinen
3:18 PM Changeset [3431] by Jari Häkkinen
Bug fix branch for 2.3
3:17 PM Changeset [3430] by Jari Häkkinen
Tagging version 2.3
3:12 PM WikiStart edited by Jari Häkkinen
pdf name changed. (diff)
3:10 PM Changeset [3429] by Jari Häkkinen
Spell checked.
3:09 PM Changeset [3428] by Jari Häkkinen
Added short intro to overview.
2:59 PM Changeset [3427] by Jari Häkkinen
Updated current contributor list.
2:58 PM Changeset [3426] by Jari Häkkinen
Removed version number from pdf document.
2:40 PM Changeset [3425] by Nicklas Nordborg
Bumped version number to 2.3.0
2:32 PM WikiStart edited by Nicklas Nordborg
(diff)
2:26 PM DeveloperInformation edited by Nicklas Nordborg
(diff)
2:19 PM Changeset [3424] by Nicklas Nordborg
2:07 PM Ticket #623 (suggestions for time-saving improvements) closed by Nicklas Nordborg
wontfix: There was a (somtimes hectic) discussion about similar issues on the …
1:53 PM Changeset [3423] by Nicklas Nordborg
Fixed image scaling issues in the PDF version
12:42 PM Ticket #605 (Illegal characters in directoryname) closed by Johan Enell
fixed: (In [3417]) Fixes #619
12:38 PM Ticket #565 (Read "Array LIMS" section) closed by Martin Svensson
fixed: (In [3422]) Fixes #565 Read Array LIMS
12:37 PM Changeset [3422] by Martin Svensson
Fixes #565 Read Array LIMS
12:27 PM Changeset [3421] by Johan Enell
added positionBather
12:20 PM Ticket #623 (suggestions for time-saving improvements) created by base
We have used BASE for protein microarray data, and would find the …
11:55 AM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
(In [3420]) References #565
11:55 AM Changeset [3420] by Martin Svensson
References #565
11:29 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) closed by Nicklas Nordborg
fixed: (In [3419]) Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:29 AM Changeset [3419] by Nicklas Nordborg
Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:26 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) updated by Nicklas Nordborg
Status, Owner, Milestone changed
11:24 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) created by base
Hi, I receive an 'Item already exists' error when restarting a failed …
11:20 AM Changeset [3418] by Nicklas Nordborg
API change in FlatFileParser
11:07 AM Changeset [3417] by Johan Enell
fixed _allIntensities fixed none 2channel import
10:48 AM Changeset [3416] by Johan Enell
changed the regexp order in hasMoreData()
9:33 AM Tickets #553,​552,​554 batch updated by Nicklas Nordborg
(In [3415]) References #552, #553, #554: More information about …
9:33 AM Changeset [3415] by Nicklas Nordborg
References #552, #553, #554: More information about backwards …
8:43 AM Ticket #621 (Write 'Plate' section) updated by Martin Svensson
Owner changed
8:43 AM Ticket #621 (Write 'Plate' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li

May 30, 2007:

11:46 PM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
(In [3414]) References #565. Major organizations, will read it one …
11:46 PM Changeset [3414] by Martin Svensson
References #565. Major organizations, will read it one more time …
5:44 PM Changeset [3413] by Martin Svensson
Removed 'term' element inside 'listitem' - not supported in the …
5:35 PM Ticket #545 (Read "Biomaterials" section.) closed by Martin Svensson
fixed: (In [3412]) Fixes #545
5:35 PM Changeset [3412] by Martin Svensson
Fixes #545
4:41 PM Changeset [3411] by Jari Häkkinen
Fixes #601.
4:41 PM Ticket #601 (Read "Appendix: jobagent.sh reference") closed by Jari Häkkinen
fixed: (In [3411]) Fixes #601.
4:17 PM Changeset [3410] by Jari Häkkinen
Added @version and @since where appropriate, however src/test was excluded.
3:35 PM Changeset [3409] by Nicklas Nordborg
References #552, #553, #554: Added information about backwards …
3:35 PM Tickets #553,​552,​554 batch updated by Nicklas Nordborg
(In [3409]) References #552, #553, #554: Added information about …
2:27 PM Changeset [3408] by Johan Enell
will work with older versions of configuration
2:26 PM Changeset [3407] by Johan Enell
added null chack to improve error text
11:52 AM Changeset [3406] by Nicklas Nordborg
References #551. Added section about export plug-ins
11:52 AM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3406]) References #551. Added section about export plug-ins
8:03 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
The Plugin.done() method is never called when doing an immediate …

May 29, 2007:

8:11 PM Ticket #544 (Write "Array LIMS" section.) closed by Nicklas Nordborg
duplicate: Duplicate of #565.
1:54 PM Changeset [3405] by Nicklas Nordborg
Fixed problems related to some of the images in the PDF version: …
1:27 PM Changeset [3404] by Nicklas Nordborg
References #534. Added missing screen shot.
1:27 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3404]) References #534. Added missing screen shot.
1:26 PM Changeset [3403] by Nicklas Nordborg
Fixes #533.
1:26 PM Ticket #533 (Read "Reporters" section.) closed by Nicklas Nordborg
fixed: (In [3403]) Fixes #533.
11:52 AM Ticket #601 (Read "Appendix: jobagent.sh reference") updated by Jari Häkkinen
Owner, Status changed
11:23 AM Ticket #533 (Read "Reporters" section.) updated by Nicklas Nordborg
Description, Owner, Status changed
11:21 AM Changeset [3402] by Nicklas Nordborg
Fixed FAQ chapters.
8:47 AM Changeset [3401] by Nicklas Nordborg
Made <warnings> in help text stand out.
8:47 AM Ticket #534 (Read "Annotations" section.) closed by Nicklas Nordborg
fixed: (In [3400]) Fixes #534.
8:47 AM Changeset [3400] by Nicklas Nordborg
Fixes #534.

May 28, 2007:

5:18 PM Changeset [3399] by Martin Svensson
References #545 Reorganisation, more to come..
5:18 PM Ticket #545 (Read "Biomaterials" section.) updated by Martin Svensson
(In [3399]) References #545 Reorganisation, more to come..
5:04 PM Changeset [3398] by Jari Häkkinen
Fixes #527.
5:04 PM Ticket #527 (Read "Trashcan" section.) closed by Jari Häkkinen
fixed: (In [3398]) Fixes #527.
5:02 PM Tickets #534,​540,​542,​543 batch updated by Nicklas Nordborg
(In [3397]) References #534, #540, #542, #543: Removed unused screen shots.
5:02 PM Changeset [3397] by Nicklas Nordborg
References #534, #540, #542, #543: Removed unused screen shots.
3:34 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3396]) References #534. Added section about annotating items.
3:34 PM Changeset [3396] by Nicklas Nordborg
References #534. Added section about annotating items.
2:22 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3395]) References #534. Major reorganisation. Swapped screen shots.
2:22 PM Changeset [3395] by Nicklas Nordborg
References #534. Major reorganisation. Swapped screen shots.
1:23 PM Changeset [3394] by Martin Svensson
Replaced the most common guibutton:s with entities
1:19 PM Changeset [3393] by Nicklas Nordborg
Reverted back to newest versions of images overwritten by older …
11:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by base
This also fixes a problem with B1PE and serial format export, so …
11:21 AM Changeset [3392] by Nicklas Nordborg
References #534 and #546. Moved info about Tab2Mage to Experiments and …
11:21 AM Tickets #534,​546 batch updated by Nicklas Nordborg
(In [3392]) References #534 and #546. Moved info about Tab2Mage to …
10:41 AM Changeset [3391] by philippe
10:41 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Jari Häkkinen
Priority changed
9:33 AM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
Owner, Status, Description changed
9:27 AM Ticket #527 (Read "Trashcan" section.) updated by Jari Häkkinen
Owner, Status changed
9:27 AM Changeset [3390] by Nicklas Nordborg
Fixes #543. Major reorganisation. Added screen shots.
9:27 AM Ticket #543 (Read "Software" section.) closed by Nicklas Nordborg
fixed: (In [3390]) Fixes #543. Major reorganisation. Added screen shots.
9:17 AM Ticket #543 (Read "Software" section.) updated by Nicklas Nordborg
Description, Status, Owner changed
9:15 AM Changeset [3389] by Nicklas Nordborg
References #546: Added missing screen shot.
9:15 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
(In [3389]) References #546: Added missing screen shot.
9:13 AM Changeset [3388] by Nicklas Nordborg
Fixes #542. Major reorganisation. Added screen shots.
9:13 AM Ticket #542 (Read "Hardware" section.) closed by Nicklas Nordborg
fixed: (In [3388]) Fixes #542. Major reorganisation. Added screen shots.
8:54 AM Ticket #542 (Read "Hardware" section.) updated by Nicklas Nordborg
Description, Status, Owner changed
8:53 AM Ticket #540 (Read "Protocols" section) closed by Nicklas Nordborg
fixed: (In [3387]) Fixes #540. Major reorganisation. Added screen shots.
8:53 AM Changeset [3387] by Nicklas Nordborg
Fixes #540. Major reorganisation. Added screen shots.
7:51 AM Ticket #540 (Read "Protocols" section) updated by Nicklas Nordborg
Description changed
7:50 AM Ticket #540 (Read "Protocols" section) updated by Nicklas Nordborg
Status, Owner changed
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