Timeline



Jun 15, 2007:

1:21 PM Changeset [3504] by Nicklas Nordborg
Fixes #512
1:21 PM Ticket #512 (Feature request: switch user stays on same page if possible) closed by Nicklas Nordborg
fixed: (In [3504]) Fixes #512
11:41 AM Changeset [3503] by Nicklas Nordborg
Fixes #628
11:41 AM Ticket #628 (Create update script that fixes incorrect file sizes) closed by Nicklas Nordborg
fixed: (In [3503]) Fixes #628
11:41 AM Changeset [3502] by Nicklas Nordborg
References #518. Fixed compilation warning from Hibernate. Added …
11:38 AM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) created by Nicklas Nordborg
Dominic Oyeniran wrote: > Having an annotation type cell type with …
11:16 AM Changeset [3501] by Johan Enell
Merged log:branches/2.3.1#3431:3486 trunk.
9:47 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) closed by Jari Häkkinen
worksforme: The R/BASE connectivity is accomplished as one of the clients at …
9:47 AM Changeset [3500] by Nicklas Nordborg
References #578. Changed to load the names of items by default
9:42 AM Changeset [3499] by Nicklas Nordborg
Fixes #640
9:42 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) closed by Nicklas Nordborg
fixed: (In [3499]) Fixes #640
9:40 AM Changeset [3498] by Nicklas Nordborg
Fixes #369
9:40 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) closed by Nicklas Nordborg
fixed: (In [3498]) Fixes #369
9:39 AM Ticket #641 (Link to non-existing image in annotate.jsp) closed by Nicklas Nordborg
fixed: (In [3497]) Fixes #641
9:39 AM Changeset [3497] by Nicklas Nordborg
Fixes #641
9:38 AM Ticket #641 (Link to non-existing image in annotate.jsp) created by Nicklas Nordborg
There is a link to /images/annotation.gif which doesn't exists. The …
9:20 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) created by Nicklas Nordborg
Go to any page and check "View source...". The code for the recent …

Jun 14, 2007:

9:01 PM Ticket #639 (exportPureMatrix method) created by Peter Johansson
It would be useful to have a method exporting a BioAssaySet to pure …
4:58 PM Changeset [3496] by Martin Svensson
References #358. Started to implement a log-structure in the migration …
3:35 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
3:28 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
2:36 PM Changeset [3495] by Nicklas Nordborg
References #625. Major features are now in place. It's a bit tricky to …
2:11 PM Milestone BASE 2.3.1 completed
Bug fixes for the 2.3 release Revision log: log:branches/2.3.1@3431:3494
1:35 PM Changeset [3494] by Jari Häkkinen
Tagging version 2.3.1
12:25 PM Changeset [3493] by Nicklas Nordborg
Fixes #566
12:25 PM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) closed by Nicklas Nordborg
fixed: (In [3493]) Fixes #566
10:44 AM Changeset [3492] by Nicklas Nordborg
Fixes #578
10:44 AM Ticket #578 (Update the History function to remember more than one item of each type) closed by Nicklas Nordborg
fixed: (In [3492]) Fixes #578
10:09 AM Changeset [3491] by Peter Johansson
added Date property
9:54 AM Changeset [3490] by Martin Svensson
References #426 Documentation about setting the user preferences for …

Jun 13, 2007:

8:30 PM Changeset [3489] by Nicklas Nordborg
Removed xref links from web client help text version
8:24 PM Changeset [3488] by Nicklas Nordborg
Create missing directory for appendixes
7:56 PM Changeset [3487] by Peter Johansson
added end-of-line style property and replaced don't and similiar with …
7:16 PM Ticket #638 (Read raw data headers from CEL files) closed by Nicklas Nordborg
fixed: Fixed in [3483]
7:15 PM Ticket #638 (Read raw data headers from CEL files) created by Nicklas Nordborg
3:34 PM Changeset [3486] by Jari Häkkinen
Bumped version number.
3:33 PM Ticket #624 (Update copyright in 'About' button) closed by Jari Häkkinen
fixed: (In [3485]) Fixes #624
3:33 PM Changeset [3485] by Jari Häkkinen
Fixes #624
2:48 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) closed by Nicklas Nordborg
fixed: (In [3484]) Fixes #627
2:48 PM Changeset [3484] by Nicklas Nordborg
Fixes #627
2:24 PM Changeset [3483] by Nicklas Nordborg
Read raw data headers from CEL file and put in RawBioAssay?
1:54 PM Ticket #435 (A check for reporter information is needed when adding/using ...) closed by Nicklas Nordborg
fixed: (In [3482]) Fixes #435.
1:54 PM Changeset [3482] by Nicklas Nordborg
Fixes #435.
1:41 PM Changeset [3481] by Martin Svensson
Fixes #426 Option to automatically delete a (import/export) job once …
1:41 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) closed by Martin Svensson
fixed: (In [3481]) Fixes #426 Option to automatically delete a …
1:16 PM Ticket #637 (Multiple plugin configurations gets mixed up.) created by base
Scenario: 1) Start a new plugin configuration of …
12:39 PM Changeset [3480] by Martin Svensson
References #426 Option to flag an import/export job to be removed, …

Jun 12, 2007:

5:23 PM Changeset [3479] by Peter Johansson
fixed some typos and grammar
2:47 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) closed by Nicklas Nordborg
fixed: (In [3478]) Fixes #634
2:47 PM Changeset [3478] by Nicklas Nordborg
Fixes #634
2:16 PM Changeset [3477] by Nicklas Nordborg
Removed call to deprecated method
1:56 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) closed by Nicklas Nordborg
fixed: (In [3476]) Fixes #372
1:56 PM Changeset [3476] by Nicklas Nordborg
Fixes #372
11:18 AM Changeset [3475] by Martin Svensson
Fixes #635 The exception was thrown from the index.jsp page in …
11:18 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) closed by Martin Svensson
fixed: (In [3475]) Fixes #635 The exception was thrown from the index.jsp …

Jun 11, 2007:

2:27 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) closed by Nicklas Nordborg
fixed: (In [3474]) Fixes #481
2:27 PM Changeset [3474] by Nicklas Nordborg
Fixes #481
2:11 PM Changeset [3473] by Nicklas Nordborg
Removed strange assignment
2:06 PM Ticket #469 (Improve error handling of invalid values in import plugins) closed by Nicklas Nordborg
fixed: (In [3472]) Fixes #469.
2:06 PM Changeset [3472] by Nicklas Nordborg
Fixes #469.
9:44 AM Tickets #573,​574 batch updated by Nicklas Nordborg
fixed: (In [3471]) Fixes #574 and #573.
9:44 AM Changeset [3471] by Nicklas Nordborg
Fixes #574 and #573.
9:34 AM Ticket #636 (Kill a running job) created by Johan Enell
It should be possible for a user to kill a running job. The core sends …
9:23 AM Ticket #479 (BioAssaySetExport should allow immediate download.) closed by Martin Svensson
fixed: (In [3470]) Fixes #479 BioAssaySetExport? should allow immediate download.
9:23 AM Changeset [3470] by Martin Svensson
Fixes #479 BioAssaySetExport? should allow immediate download.
9:21 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) created by Martin Svensson
The export seems to work and the file is downloaded but there is an …

Jun 8, 2007:

4:54 PM Tickets #606,​622 batch updated by Johan Enell
fixed: (In [3469]) Fixes #606 Fixes #622
4:54 PM Changeset [3469] by Johan Enell
Fixes #606 Fixes #622
2:29 PM Changeset [3468] by Nicklas Nordborg
References #574, #573 and #469. Created a simple test case with dirty …
12:18 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) created by Johan Enell
From the bioassayset view I press the bioassays tab. I click run …
11:29 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) closed by Nicklas Nordborg
fixed: (In [3467]) Fixes #81
11:29 AM Changeset [3467] by Nicklas Nordborg
Fixes #81
8:37 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) closed by Nicklas Nordborg
fixed: (In [3466]) Fixes #446
8:37 AM Changeset [3466] by Nicklas Nordborg
Fixes #446

Jun 7, 2007:

1:50 PM Ticket #630 (Check quota before uploading a new file) closed by Nicklas Nordborg
fixed: (In [3465]) Fixes #630.
1:50 PM Changeset [3465] by Nicklas Nordborg
Fixes #630.
12:15 PM Ticket #633 (Show warning when moving files offline) closed by Nicklas Nordborg
fixed: (In [3464]) Fixes #633
12:15 PM Changeset [3464] by Nicklas Nordborg
Fixes #633
12:03 PM Ticket #633 (Show warning when moving files offline) created by Nicklas Nordborg
In the current implementation the files are moved immediately.
12:00 PM Ticket #620 (Add 'write protected' property to File) closed by Nicklas Nordborg
fixed: In [3463]
11:56 AM Changeset [3463] by Nicklas Nordborg
Fxies #620
10:25 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Johan Enell
fixed: (In [3462]) Fixes #604
10:25 AM Changeset [3462] by Johan Enell
Fixes #604
10:12 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) reopened by Johan Enell
The chars \r\n in the description text from the base1 configfile …
9:28 AM Changeset [3461] by Nicklas Nordborg
Remvoed unused imports
9:27 AM Changeset [3460] by Nicklas Nordborg
References #558. All places that used Session.connection(), which has …
8:57 AM Ticket #567 (jdk6 (1.6.0) compatibility) closed by Nicklas Nordborg
fixed: (In [3459]) Fixes #567
8:57 AM Changeset [3459] by Nicklas Nordborg
Fixes #567
8:55 AM Changeset [3458] by Martin Svensson
Two minor fixes: Added database server's name and version on the …
8:51 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) closed by Martin Svensson
fixed: (In [3457]) Fixes #610 Offline files are counted in the total quota in …
8:51 AM Changeset [3457] by Martin Svensson
Fixes #610 Offline files are counted in the total quota in disk usage …
12:46 AM Ticket #564 (Add support for filtering against null values in JEP) closed by Nicklas Nordborg
fixed: (In [3456]) Fixes #564. It is now possible to use: ch(1) == null
12:46 AM Changeset [3456] by Nicklas Nordborg
Fixes #564. It is now possible to use: ch(1) == null or {{{ch(1) …
12:21 AM Changeset [3455] by Nicklas Nordborg
Fixed LazyInitialisation? problem when using the 'Copy transformation' …

Jun 6, 2007:

11:24 PM Ticket #616 (AnyToAny.exists()) closed by Nicklas Nordborg
fixed: (In [3454]) Fixes #616
11:24 PM Changeset [3454] by Nicklas Nordborg
Fixes #616

Jun 5, 2007:

2:56 PM Ticket #561 (Filter on date) closed by Nicklas Nordborg
fixed: (In [3453]) Fixes #561
2:56 PM Changeset [3453] by Nicklas Nordborg
Fixes #561
2:05 PM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) closed by Nicklas Nordborg
duplicate: #626
1:58 PM Tickets #558,​568 batch updated by Nicklas Nordborg
fixed: (In [3452]) Fixes #558 and #568
1:58 PM Changeset [3452] by Nicklas Nordborg
Fixes #558 and #568
12:21 PM Ticket #632 (BioAssaySetExporter breaks if names of formulas, extra values, raw ...) created by Nicklas Nordborg
The BioAssaySetExporter? uses the name of the following items to …
12:07 PM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) closed by Nicklas Nordborg
fixed: (In [3451]) Fixes #588
12:07 PM Changeset [3451] by Nicklas Nordborg
Fixes #588
11:25 AM Changeset [3450] by Martin Svensson
Fixes #518 Database version in about view
11:25 AM Ticket #518 (Database version in about view) closed by Martin Svensson
fixed: (In [3450]) Fixes #518 Database version in about view
11:07 AM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) created by Johan Enell
The database update should remove all AnyToAny? links created by …
9:56 AM Changeset [3449] by Nicklas Nordborg
Fixes #572
9:56 AM Ticket #572 (genepix raw data importer config typo) closed by Nicklas Nordborg
fixed: (In [3449]) Fixes #572
9:38 AM Ticket #485 (A user's group membership is not listed.) closed by Nicklas Nordborg
worksforme
9:36 AM Ticket #582 ('Removed' option doesn't work when listing project items) closed by Nicklas Nordborg
fixed: Fixed in [3448]
9:34 AM Changeset [3448] by Nicklas Nordborg
8:39 AM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) closed by Nicklas Nordborg
fixed: (In [3447]) Fixes #629. The 'removed' option has been removed from the …
8:39 AM Changeset [3447] by Nicklas Nordborg
Fixes #629. The 'removed' option has been removed from the preset …

Jun 4, 2007:

7:38 PM Ticket #630 (Check quota before uploading a new file) created by Nicklas Nordborg
It is annoying to first upload and then get the error message. Note …
4:24 PM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) created by Martin Svensson
There is no effect to have the 'Removed' option unchecked in …
3:35 PM Ticket #510 (typos on Trac Developer Information) closed by Jari Häkkinen
fixed
3:34 PM DeveloperInformation edited by Jari Häkkinen
Fixes ticket:510 (diff)
3:32 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) closed by Nicklas Nordborg
fixed: (In [3446]) Fixes #581
3:32 PM Changeset [3446] by Nicklas Nordborg
Fixes #581
3:24 PM Changeset [3445] by Nicklas Nordborg
Fixes #604
3:24 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Nicklas Nordborg
fixed: (In [3445]) Fixes #604
3:07 PM Changeset [3444] by Nicklas Nordborg
Fixes #575. Additional fix is needed in the trunk. See #628
3:07 PM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3444]) Fixes #575. Additional fix is needed in the trunk. See #628
3:05 PM Ticket #628 (Create update script that fixes incorrect file sizes) created by Nicklas Nordborg
Bug #575 may have created files with incorrect size in the database. …
2:48 PM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) closed by Martin Svensson
fixed: (In [3443]) Fixes #609 'Delete', 'Restore' and 'Share' doesn't work …
2:48 PM Changeset [3443] by Martin Svensson
Fixes #609 'Delete', 'Restore' and 'Share' doesn't work when listing …
2:31 PM Changeset [3442] by Nicklas Nordborg
Fixes #576.
2:31 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) closed by Nicklas Nordborg
fixed: (In [3442]) Fixes #576.
2:24 PM DownloadPage edited by Jari Häkkinen
Updated installation doc links. (diff)
2:06 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) created by Jari Häkkinen
Relates to ticket:578
2:01 PM Ticket #618 (Write inherited annotations in biomaterials section) closed by Jari Häkkinen
fixed
1:59 PM Ticket #626 (Remove base1executor any to any links) created by Jari Häkkinen
1:32 PM Changeset [3441] by Nicklas Nordborg
Fixes #587.
1:32 PM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) closed by Nicklas Nordborg
fixed: (In [3441]) Fixes #587.
11:46 AM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) closed by Jari Häkkinen
duplicate
10:47 AM Ticket #153 (More progress from importer plug-ins) closed by Jari Häkkinen
wontfix: The issue has evolved away.
10:46 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) closed by Jari Häkkinen
wontfix
9:31 AM Changeset [3440] by Nicklas Nordborg
References #613. Must also call done() when unpacking zipped files. …
9:22 AM Changeset [3439] by Nicklas Nordborg
Fixes #613.
9:22 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) closed by Nicklas Nordborg
fixed: (In [3439]) Fixes #613.
9:14 AM Changeset [3438] by Nicklas Nordborg
References #625. Added some infrastructure and moved context checking …
8:50 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) created by Nicklas Nordborg
When selecing a plug-in the current list of warnings from other, …
8:11 AM Ticket #575 (Spot image generator creates file with invalid size in database) reopened by Nicklas Nordborg
Reopens this ticket because we must also fix the incorrect file size …

Jun 1, 2007:

9:40 PM DownloadPage edited by Jari Häkkinen
(diff)
9:49 AM DownloadPage edited by Jari Häkkinen
2.3 released. (diff)
8:35 AM Changeset [3437] by Nicklas Nordborg
Fixes #614: Cannot edit a plug-in definition when the plug-in jar is …
8:35 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) closed by Nicklas Nordborg
fixed: (In [3437]) Fixes #614: Cannot edit a plug-in definition when the …
8:15 AM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3436]) Fixes #575: Spot image generator creates file with invalid …
8:15 AM Changeset [3436] by Nicklas Nordborg
Fixes #575: Spot image generator creates file with invalid size in database
8:04 AM Changeset [3435] by Nicklas Nordborg
Changed version number to 2.3.1pre
12:37 AM Changeset [3434] by Jari Häkkinen
Bumped version number.
12:35 AM Changeset [3433] by Jari Häkkinen
Merged log:trunk#3267:3432 into the webservices branch.
12:25 AM Changeset [3432] by Jari Häkkinen
Removed carriage return characters.

May 31, 2007:

4:08 PM Milestone BASE 2.3 completed
Documentation release.
3:54 PM Ticket #624 (Update copyright in 'About' button) created by Jari Häkkinen
3:18 PM Changeset [3431] by Jari Häkkinen
Bug fix branch for 2.3
3:17 PM Changeset [3430] by Jari Häkkinen
Tagging version 2.3
3:12 PM WikiStart edited by Jari Häkkinen
pdf name changed. (diff)
3:10 PM Changeset [3429] by Jari Häkkinen
Spell checked.
3:09 PM Changeset [3428] by Jari Häkkinen
Added short intro to overview.
2:59 PM Changeset [3427] by Jari Häkkinen
Updated current contributor list.
2:58 PM Changeset [3426] by Jari Häkkinen
Removed version number from pdf document.
2:40 PM Changeset [3425] by Nicklas Nordborg
Bumped version number to 2.3.0
2:32 PM WikiStart edited by Nicklas Nordborg
(diff)
2:26 PM DeveloperInformation edited by Nicklas Nordborg
(diff)
2:19 PM Changeset [3424] by Nicklas Nordborg
2:07 PM Ticket #623 (suggestions for time-saving improvements) closed by Nicklas Nordborg
wontfix: There was a (somtimes hectic) discussion about similar issues on the …
1:53 PM Changeset [3423] by Nicklas Nordborg
Fixed image scaling issues in the PDF version
12:42 PM Ticket #605 (Illegal characters in directoryname) closed by Johan Enell
fixed: (In [3417]) Fixes #619
12:38 PM Ticket #565 (Read "Array LIMS" section) closed by Martin Svensson
fixed: (In [3422]) Fixes #565 Read Array LIMS
12:37 PM Changeset [3422] by Martin Svensson
Fixes #565 Read Array LIMS
12:27 PM Changeset [3421] by Johan Enell
added positionBather
12:20 PM Ticket #623 (suggestions for time-saving improvements) created by base
We have used BASE for protein microarray data, and would find the …
11:55 AM Changeset [3420] by Martin Svensson
References #565
11:29 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) closed by Nicklas Nordborg
fixed: (In [3419]) Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:29 AM Changeset [3419] by Nicklas Nordborg
Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:24 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) created by base
Hi, I receive an 'Item already exists' error when restarting a failed …
11:20 AM Changeset [3418] by Nicklas Nordborg
API change in FlatFileParser?
11:07 AM Changeset [3417] by Johan Enell
fixed _allIntensities fixed none 2channel import
10:48 AM Changeset [3416] by Johan Enell
changed the regexp order in hasMoreData()
9:33 AM Changeset [3415] by Nicklas Nordborg
References #552, #553, #554: More information about backwards …
8:43 AM Ticket #621 (Write 'Plate' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li

May 30, 2007:

11:46 PM Changeset [3414] by Martin Svensson
References #565. Major organizations, will read it one more time …
5:44 PM Changeset [3413] by Martin Svensson
Removed 'term' element inside 'listitem' - not supported in the …
5:35 PM Ticket #545 (Read "Biomaterials" section.) closed by Martin Svensson
fixed: (In [3412]) Fixes #545
5:35 PM Changeset [3412] by Martin Svensson
Fixes #545
4:41 PM Changeset [3411] by Jari Häkkinen
Fixes #601.
4:41 PM Ticket #601 (Read "Appendix: jobagent.sh reference") closed by Jari Häkkinen
fixed: (In [3411]) Fixes #601.
4:17 PM Changeset [3410] by Jari Häkkinen
Added @version and @since where appropriate, however src/test was excluded.
3:35 PM Changeset [3409] by Nicklas Nordborg
References #552, #553, #554: Added information about backwards …
2:27 PM Changeset [3408] by Johan Enell
will work with older versions of configuration
2:26 PM Changeset [3407] by Johan Enell
added null chack to improve error text
11:52 AM Changeset [3406] by Nicklas Nordborg
References #551. Added section about export plug-ins

May 29, 2007:

8:11 PM Ticket #544 (Write "Array LIMS" section.) closed by Nicklas Nordborg
duplicate: Duplicate of #565.
1:54 PM Changeset [3405] by Nicklas Nordborg
Fixed problems related to some of the images in the PDF version: …
1:27 PM Changeset [3404] by Nicklas Nordborg
References #534. Added missing screen shot.
1:26 PM Changeset [3403] by Nicklas Nordborg
Fixes #533.
1:26 PM Ticket #533 (Read "Reporters" section.) closed by Nicklas Nordborg
fixed: (In [3403]) Fixes #533.
11:21 AM Changeset [3402] by Nicklas Nordborg
Fixed FAQ chapters.
8:47 AM Changeset [3401] by Nicklas Nordborg
Made <warnings> in help text stand out.
8:47 AM Ticket #534 (Read "Annotations" section.) closed by Nicklas Nordborg
fixed: (In [3400]) Fixes #534.
8:47 AM Changeset [3400] by Nicklas Nordborg
Fixes #534.

May 28, 2007:

5:18 PM Changeset [3399] by Martin Svensson
References #545 Reorganisation, more to come..
5:04 PM Changeset [3398] by Jari Häkkinen
Fixes #527.
5:04 PM Ticket #527 (Read "Trashcan" section.) closed by Jari Häkkinen
fixed: (In [3398]) Fixes #527.
5:02 PM Changeset [3397] by Nicklas Nordborg
References #534, #540, #542, #543: Removed unused screen shots.
3:34 PM Changeset [3396] by Nicklas Nordborg
References #534. Added section about annotating items.
2:22 PM Changeset [3395] by Nicklas Nordborg
References #534. Major reorganisation. Swapped screen shots.
1:23 PM Changeset [3394] by Martin Svensson
Replaced the most common guibutton:s with entities
1:19 PM Changeset [3393] by Nicklas Nordborg
Reverted back to newest versions of images overwritten by older …
11:21 AM Changeset [3392] by Nicklas Nordborg
References #534 and #546. Moved info about Tab2Mage to Experiments and …
10:41 AM Changeset [3391] by philippe
9:27 AM Changeset [3390] by Nicklas Nordborg
Fixes #543. Major reorganisation. Added screen shots.
9:27 AM Ticket #543 (Read "Software" section.) closed by Nicklas Nordborg
fixed: (In [3390]) Fixes #543. Major reorganisation. Added screen shots.
9:15 AM Changeset [3389] by Nicklas Nordborg
References #546: Added missing screen shot.
9:13 AM Changeset [3388] by Nicklas Nordborg
Fixes #542. Major reorganisation. Added screen shots.
9:13 AM Ticket #542 (Read "Hardware" section.) closed by Nicklas Nordborg
fixed: (In [3388]) Fixes #542. Major reorganisation. Added screen shots.
8:53 AM Ticket #540 (Read "Protocols" section) closed by Nicklas Nordborg
fixed: (In [3387]) Fixes #540. Major reorganisation. Added screen shots.
8:53 AM Changeset [3387] by Nicklas Nordborg
Fixes #540. Major reorganisation. Added screen shots.

May 25, 2007:

5:11 PM Changeset [3386] by Martin Svensson
Moved the FAQs to a part of it's own and changed to use right tags for FAQs
2:21 PM Changeset [3385] by Nicklas Nordborg
References #551. Transferred section about authentication plug-ins …
12:59 PM Changeset [3384] by Johan Enell
corrected some backward compability errors
12:17 PM Changeset [3383] by Nicklas Nordborg
References #551. Added section about FileUnpacker? plug-ins.
11:31 AM Ticket #620 (Add 'write protected' property to File) created by Nicklas Nordborg
This will prevent users from accidentally removing a file or moving it …
11:11 AM Changeset [3382] by Martin Svensson
Fixed the organization of the output-files
9:45 AM Changeset [3381] by Martin Svensson
References #565. Minor fixes - pictures remain to be checked in before …
9:31 AM Changeset [3380] by Johan Enell
jobParameter specification added as an configuration parameter

May 24, 2007:

9:59 PM Changeset [3379] by Nicklas Nordborg
Fixed classpath problems with Windows
9:54 PM Changeset [3378] by Nicklas Nordborg
Render <command> tags in monospace font.
9:52 PM Changeset [3377] by Nicklas Nordborg
Fixed strange directory in Appendix->Menuguide
9:50 PM Changeset [3376] by Nicklas Nordborg
References #601
8:51 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) closed by Jari Häkkinen
fixed: (In [3375]) Fixes #619
8:51 PM Changeset [3375] by Jari Häkkinen
Fixes #619
8:50 PM Changeset [3374] by Jari Häkkinen
Minor fix.
7:52 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) created by Peter Johansson
In file …
4:26 PM Changeset [3373] by Martin Svensson
Correct some small compiling errors
10:45 AM Changeset [3372] by philippe
9:33 AM Changeset [3371] by Martin Svensson
Removed empty lines in programlistings
8:37 AM Ticket #618 (Write inherited annotations in biomaterials section) created by Jari Häkkinen
8:36 AM Ticket #617 (Write plate management in array LIMS) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li

May 23, 2007:

7:31 PM Changeset [3370] by philippe
5:00 PM Changeset [3369] by Martin Svensson
Removed the empty row at the top in each programlisting
4:08 PM Ticket #616 (AnyToAny.exists()) created by Johan Enell
A method AnyToAny?.exists() could be handy to have. Don't know what …
2:39 PM Changeset [3368] by Martin Svensson
Fixes #516 Read "Installation and upgrade" section.
2:39 PM Ticket #516 (Read "Installation and upgrade" section.) closed by Martin Svensson
fixed: (In [3368]) Fixes #516 Read "Installation and upgrade" section.
2:35 PM Ticket #615 (Write 'Installing job agents' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/docbook/html/admindoc/installati
2:23 PM Changeset [3367] by Martin Svensson
Insert linebreak automatically in programlisting when line to long to …
2:02 PM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) created by Jari Häkkinen
I changed my plug-in jar file name from oldname.jar to newname.jar. …
12:56 PM Changeset [3366] by Nicklas Nordborg
References #551. Added section about core and web client interaction …
12:28 PM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) created by Nicklas Nordborg
In /www/common/plugin/index.jsp there is code that checks if a plugin …
12:25 PM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) created by Nicklas Nordborg
This will generate a Hibernate exception similar to: […] The …
11:12 AM Changeset [3365] by Martin Svensson
Fixes #598 Read "Appendix: jobagent.properties reference"
11:12 AM Ticket #598 (Read "Appendix: jobagent.properties reference") closed by Martin Svensson
fixed: (In [3365]) Fixes #598 Read "Appendix: jobagent.properties reference"
9:52 AM Changeset [3364] by Martin Svensson
References #527 Ready for reading

May 22, 2007:

10:48 PM Changeset [3363] by Nicklas Nordborg
References #598
3:05 PM Ticket #611 (Improvements of Trashcan) created by Martin Svensson
Here follows a suggestion of trashcan improvements: * Change the …
12:11 PM Changeset [3362] by Nicklas Nordborg
References #546: Added some information about experiments
9:57 AM Changeset [3361] by Jari Häkkinen
Changing <style> to <xslt> since ant docbook complains.
9:17 AM Changeset [3360] by Nicklas Nordborg
Added tip about decreasing fontsize when taking screenshots
9:02 AM Changeset [3359] by Nicklas Nordborg
Added text about View -> All items and fixed some cross references.
8:49 AM Changeset [3358] by Nicklas Nordborg
Fixed spelling and some cross references
8:28 AM Ticket #549 (Read "Administrate users/groups/roles" section.) closed by Nicklas Nordborg
fixed: (In [3357]) Fixes #549.
8:28 AM Changeset [3357] by Nicklas Nordborg
Fixes #549.
8:18 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) created by Nicklas Nordborg
1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
8:06 AM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) created by Nicklas Nordborg
1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
7:59 AM Ticket #608 (Delete 'removed' items directly from list views) created by Nicklas Nordborg
As it is now, 'removed' items can only be deleted from the trashcan. …

May 21, 2007:

4:46 PM Changeset [3356] by Jari Häkkinen
svndigest should ignore these autogenerated files.
4:40 PM Changeset [3355] by Jari Häkkinen
Addresses #516. Migration instructions done.
11:51 AM Changeset [3354] by Nicklas Nordborg
Fixes #584
11:51 AM Ticket #584 (Read "Appendix. Menu guide") closed by Nicklas Nordborg
fixed: (In [3354]) Fixes #584
11:42 AM Changeset [3353] by Nicklas Nordborg
Removed scaling parameters from small image.
11:42 AM Ticket #555 (Read the short document on how to write the BASE document.) closed by Nicklas Nordborg
fixed: (In [3352]) Fixes #555
11:42 AM Changeset [3352] by Nicklas Nordborg
Fixes #555
10:00 AM Changeset [3351] by Martin Svensson
Fixes '[fop] SEVERE: Couldn't find hyphenation pattern en' when …
7:58 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) closed by Nicklas Nordborg
worksforme: The failure happens when generating the help texts for the web client, …

May 19, 2007:

9:56 AM Changeset [3350] by Jari Häkkinen
Addresses #516. Upgrade and installation done.
9:50 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) created by Jari Häkkinen
html is generated properly but then the build script stops with the …
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