Timeline
May 30, 2007:
- 11:46 PM Changeset [3414] by
- References #565. Major organizations, will read it one more time …
- 5:44 PM Changeset [3413] by
- Removed 'term' element inside 'listitem' - not supported in the …
- 5:35 PM Ticket #545 (Read "Biomaterials" section.) closed by
- fixed: (In [3412]) Fixes #545
- 5:35 PM Changeset [3412] by
- Fixes #545
- 4:41 PM Changeset [3411] by
- Fixes #601.
- 4:41 PM Ticket #601 (Read "Appendix: jobagent.sh reference") closed by
- fixed: (In [3411]) Fixes #601.
- 4:17 PM Changeset [3410] by
- Added @version and @since where appropriate, however src/test was excluded.
- 3:35 PM Changeset [3409] by
- References #552, #553, #554: Added information about backwards …
- 2:27 PM Changeset [3408] by
- will work with older versions of configuration
- 2:26 PM Changeset [3407] by
- added null chack to improve error text
- 11:52 AM Changeset [3406] by
- References #551. Added section about export plug-ins
May 29, 2007:
- 8:11 PM Ticket #544 (Write "Array LIMS" section.) closed by
- duplicate: Duplicate of #565.
- 1:54 PM Changeset [3405] by
- Fixed problems related to some of the images in the PDF version: …
- 1:27 PM Changeset [3404] by
- References #534. Added missing screen shot.
- 1:26 PM Changeset [3403] by
- Fixes #533.
- 1:26 PM Ticket #533 (Read "Reporters" section.) closed by
- fixed: (In [3403]) Fixes #533.
- 11:21 AM Changeset [3402] by
- Fixed FAQ chapters.
- 8:47 AM Changeset [3401] by
- Made <warnings> in help text stand out.
- 8:47 AM Ticket #534 (Read "Annotations" section.) closed by
- fixed: (In [3400]) Fixes #534.
- 8:47 AM Changeset [3400] by
- Fixes #534.
May 28, 2007:
- 5:18 PM Changeset [3399] by
- References #545 Reorganisation, more to come..
- 5:04 PM Changeset [3398] by
- Fixes #527.
- 5:04 PM Ticket #527 (Read "Trashcan" section.) closed by
- fixed: (In [3398]) Fixes #527.
- 5:02 PM Changeset [3397] by
- References #534, #540, #542, #543: Removed unused screen shots.
- 3:34 PM Changeset [3396] by
- References #534. Added section about annotating items.
- 2:22 PM Changeset [3395] by
- References #534. Major reorganisation. Swapped screen shots.
- 1:23 PM Changeset [3394] by
- Replaced the most common guibutton:s with entities
- 1:19 PM Changeset [3393] by
- Reverted back to newest versions of images overwritten by older …
- 11:21 AM Changeset [3392] by
- References #534 and #546. Moved info about Tab2Mage to Experiments and …
- 10:41 AM Changeset [3391] by
- 9:27 AM Changeset [3390] by
- Fixes #543. Major reorganisation. Added screen shots.
- 9:27 AM Ticket #543 (Read "Software" section.) closed by
- fixed: (In [3390]) Fixes #543. Major reorganisation. Added screen shots.
- 9:15 AM Changeset [3389] by
- References #546: Added missing screen shot.
- 9:13 AM Changeset [3388] by
- Fixes #542. Major reorganisation. Added screen shots.
- 9:13 AM Ticket #542 (Read "Hardware" section.) closed by
- fixed: (In [3388]) Fixes #542. Major reorganisation. Added screen shots.
- 8:53 AM Ticket #540 (Read "Protocols" section) closed by
- fixed: (In [3387]) Fixes #540. Major reorganisation. Added screen shots.
- 8:53 AM Changeset [3387] by
- Fixes #540. Major reorganisation. Added screen shots.
May 25, 2007:
- 5:11 PM Changeset [3386] by
- Moved the FAQs to a part of it's own and changed to use right tags for FAQs
- 2:21 PM Changeset [3385] by
- References #551. Transferred section about authentication plug-ins …
- 12:59 PM Changeset [3384] by
- corrected some backward compability errors
- 12:17 PM Changeset [3383] by
- References #551. Added section about FileUnpacker? plug-ins.
- 11:31 AM Ticket #620 (Add 'write protected' property to File) created by
- This will prevent users from accidentally removing a file or moving it …
- 11:11 AM Changeset [3382] by
- Fixed the organization of the output-files
- 9:45 AM Changeset [3381] by
- References #565. Minor fixes - pictures remain to be checked in before …
- 9:31 AM Changeset [3380] by
- jobParameter specification added as an configuration parameter
May 24, 2007:
- 9:59 PM Changeset [3379] by
- Fixed classpath problems with Windows
- 9:54 PM Changeset [3378] by
- Render <command> tags in monospace font.
- 9:52 PM Changeset [3377] by
- Fixed strange directory in Appendix->Menuguide
- 9:50 PM Changeset [3376] by
- References #601
- 8:51 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) closed by
- fixed: (In [3375]) Fixes #619
- 8:51 PM Changeset [3375] by
- Fixes #619
- 8:50 PM Changeset [3374] by
- Minor fix.
- 7:52 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) created by
- In file …
- 4:26 PM Changeset [3373] by
- Correct some small compiling errors
- 10:45 AM Changeset [3372] by
- 9:33 AM Changeset [3371] by
- Removed empty lines in programlistings
- 8:37 AM Ticket #618 (Write inherited annotations in biomaterials section) created by
- 8:36 AM Ticket #617 (Write plate management in array LIMS) created by
- http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li …
May 23, 2007:
- 7:31 PM Changeset [3370] by
- 5:00 PM Changeset [3369] by
- Removed the empty row at the top in each programlisting
- 4:08 PM Ticket #616 (AnyToAny.exists()) created by
- A method AnyToAny?.exists() could be handy to have. Don't know what …
- 2:39 PM Changeset [3368] by
- Fixes #516 Read "Installation and upgrade" section.
- 2:39 PM Ticket #516 (Read "Installation and upgrade" section.) closed by
- fixed: (In [3368]) Fixes #516 Read "Installation and upgrade" section.
- 2:35 PM Ticket #615 (Write 'Installing job agents' section) created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/admindoc/installati …
- 2:23 PM Changeset [3367] by
- Insert linebreak automatically in programlisting when line to long to …
- 2:02 PM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) created by
- I changed my plug-in jar file name from oldname.jar to newname.jar. …
- 12:56 PM Changeset [3366] by
- References #551. Added section about core and web client interaction …
- 12:28 PM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) created by
- In /www/common/plugin/index.jsp there is code that checks if a plugin …
- 12:25 PM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) created by
- This will generate a Hibernate exception similar to: […] The …
- 11:12 AM Changeset [3365] by
- Fixes #598 Read "Appendix: jobagent.properties reference"
- 11:12 AM Ticket #598 (Read "Appendix: jobagent.properties reference") closed by
- fixed: (In [3365]) Fixes #598 Read "Appendix: jobagent.properties reference"
- 9:52 AM Changeset [3364] by
- References #527 Ready for reading
May 22, 2007:
- 10:48 PM Changeset [3363] by
- References #598
- 3:05 PM Ticket #611 (Improvements of Trashcan) created by
- Here follows a suggestion of trashcan improvements: * Change the …
- 12:11 PM Changeset [3362] by
- References #546: Added some information about experiments
- 9:57 AM Changeset [3361] by
- Changing <style> to <xslt> since ant docbook complains.
- 9:17 AM Changeset [3360] by
- Added tip about decreasing fontsize when taking screenshots
- 9:02 AM Changeset [3359] by
- Added text about View -> All items and fixed some cross references.
- 8:49 AM Changeset [3358] by
- Fixed spelling and some cross references
- 8:28 AM Ticket #549 (Read "Administrate users/groups/roles" section.) closed by
- fixed: (In [3357]) Fixes #549.
- 8:28 AM Changeset [3357] by
- Fixes #549.
- 8:18 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) created by
- 1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
- 8:06 AM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) created by
- 1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
- 7:59 AM Ticket #608 (Delete 'removed' items directly from list views) created by
- As it is now, 'removed' items can only be deleted from the trashcan. …
May 21, 2007:
- 4:46 PM Changeset [3356] by
- svndigest should ignore these autogenerated files.
- 4:40 PM Changeset [3355] by
- Addresses #516. Migration instructions done.
- 11:51 AM Changeset [3354] by
- Fixes #584
- 11:51 AM Ticket #584 (Read "Appendix. Menu guide") closed by
- fixed: (In [3354]) Fixes #584
- 11:42 AM Changeset [3353] by
- Removed scaling parameters from small image.
- 11:42 AM Ticket #555 (Read the short document on how to write the BASE document.) closed by
- fixed: (In [3352]) Fixes #555
- 11:42 AM Changeset [3352] by
- Fixes #555
- 10:00 AM Changeset [3351] by
- Fixes '[fop] SEVERE: Couldn't find hyphenation pattern en' when …
- 7:58 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) closed by
- worksforme: The failure happens when generating the help texts for the web client, …
May 19, 2007:
- 9:56 AM Changeset [3350] by
- Addresses #516. Upgrade and installation done.
- 9:50 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) created by
- html is generated properly but then the build script stops with the …
May 16, 2007:
- 4:47 PM Ticket #606 (Base1PluginExecuter plugin directory) created by
- When Base1PluginExecuter detects that the plugin directory doesn't …
- 4:39 PM Ticket #605 (Illegal characters in directoryname) created by
- The method that suggests the plugin directory for the …
- 4:29 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) created by
- The description of a Base1PluginExecuter configuration should be set …
- 2:57 PM Ticket #603 (Clean up the docbook directory) closed by
- fixed: (In [3349]) Fixes #603 Done some clean-up
- 2:57 PM Changeset [3349] by
- Fixes #603 Done some clean-up
- 2:36 PM Changeset [3348] by
- Updated documentation about how to add screenshots
- 2:24 PM Ticket #603 (Clean up the docbook directory) created by
- There are eg. some subdirectories that aren't need in BASE documentation.
- 2:19 PM Ticket #594 (Read "Appendix: base.config reference") closed by
- fixed: (In [3347]) Fixes #594 Read "Appendix:base.config ref"
- 2:19 PM Changeset [3347] by
- Fixes #594 Read "Appendix:base.config ref"
- 2:10 PM Changeset [3346] by
- Updated docbook PDF generation to use FOP 0.93 instead of 0.20
- 1:17 PM Changeset [3345] by
- Fixes #548
- 1:17 PM Ticket #548 (Read "Installing plug-ins" section) closed by
- fixed: (In [3345]) Fixes #548
- 9:50 AM Changeset [3344] by
- Insert page number in pdf for all xref-elements
- 8:57 AM Ticket #557 (Read File management doc) closed by
- fixed: (In [3343]) Fixes #557: Read File management doc
- 8:57 AM Changeset [3343] by
- Fixes #557: Read File management doc
- 8:19 AM Changeset [3342] by
- Turn off image scaling for HTML output.
May 15, 2007:
- 8:05 PM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) created by
- See log output: […]
- 2:08 PM Changeset [3341] by
- References #584 Ready to be read…
- 1:23 PM Changeset [3340] by
- References #594: Write "Appendix: base.config reference" Now ready …
- 1:22 PM Ticket #601 (Read "Appendix: jobagent.sh reference") created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j …
- 1:21 PM Ticket #600 (Write "Appendix: Other configuration files") created by
- http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.otherconf …
- 1:21 PM Ticket #599 (Write "Appendix: migrate.properties reference") created by
- http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.migrate.p …
- 1:20 PM Ticket #598 (Read "Appendix: jobagent.properties reference") created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j …
- 1:19 PM Ticket #597 (Read "Appendix: web.xml reference") created by
- http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.web.xml.html
- 1:19 PM Ticket #596 (Read "Appendix: raw-data-types.xml reference") created by
- http://base.thep.lu.se/chrome/site/trunk/html/appendix/appendix.rawdata …
- 1:18 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.e …
- 1:18 PM Ticket #594 (Read "Appendix: base.config reference") created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.b …
- 1:17 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") created by
- http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.c …
- 1:13 PM Changeset [3339] by
- References #548: Write "Installing plug-ins" section Now ready for …
- 11:45 AM Changeset [3338] by
- Fixed incorrrect setting in default base.config
- 10:44 AM Changeset [3337] by
- Fixes #592.
- 10:44 AM Ticket #592 (broken anchors in documentation) closed by
- fixed: (In [3337]) Fixes #592.
- 10:21 AM Ticket #592 (broken anchors in documentation) created by
- I found a couple of broekn anchors in the documentation, for example, …
May 14, 2007:
- 4:32 PM Changeset [3336] by
- Fixes #586
- 4:32 PM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) closed by
- fixed: (In [3336]) Fixes #586
- 4:18 PM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) closed by
- fixed: (In [3335]) fixes #589
- 4:18 PM Changeset [3335] by
- fixes #589
- 12:15 PM Changeset [3334] by
- Addded some more appendixes to docbook
- 9:32 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) created by
- Currently you have to choose if you want to use job agents or the …
- 8:44 AM Ticket #590 (Create test program for BioAsssaySetExporter) created by
- Thers is no test program for the BioAssaySet? exporter. I think it is …
- 8:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) created by
- Trying to export a bioassayset in serial BASEfile format. After …
- 8:31 AM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) created by
- When a formula column has been selected for export the …
- 8:24 AM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) created by
- When exporting a bioassay set in BASEfile format you will get a …
- 8:21 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) created by
- No formulas will show up in the 'Fields' parameter list when exporting …
May 11, 2007:
- 5:04 PM Changeset [3333] by
- References #584 Weekend check-in
- 3:50 PM Ticket #526 (Read "Projects and the permission system") closed by
- fixed: (In [3332]) Fixes #526 Read "Projects and the permission system"
- 3:50 PM Changeset [3332] by
- Fixes #526 Read "Projects and the permission system"
- 2:47 PM Ticket #585 (Make the BASE file system pluggable) created by
- The BASE file system is already an abstract thing for client …
- 2:34 PM Changeset [3331] by
- References #535: Added style for <important> tags
- 2:31 PM Changeset [3330] by
- References #546: Added spot image screen shot
- 2:20 PM Changeset [3329] by
- References #548: Write "Installing plug-ins" section
- 1:45 PM Changeset [3328] by
- References #584
- 1:44 PM Changeset [3327] by
- References #584
- 1:32 PM Ticket #584 (Read "Appendix. Menu guide") created by
- This appendix should be a reference for those who quickly wants to …
- 12:04 PM Changeset [3326] by
- References #549. Moved the helptext-tags inside the sect3-tags to …
- 9:17 AM Changeset [3325] by
- FIxed typo.
- 9:06 AM Changeset [3324] by
- web.gif has disappeared, removed it from the doc.
- 8:35 AM Ticket #570 (Write "Configuring core plugins" section) closed by
- duplicate: Part of #548: Write "Installing plug-ins" section
- 8:23 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) closed by
- fixed: Well, it is fixed, but we add missing styles when we find out about them.
- 8:18 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) created by
- This is currently not allowed because of validation issues. The …
May 10, 2007:
- 11:08 PM Changeset [3323] by
- Added missing parts of a paragraph.
- 10:58 PM Changeset [3322] by
- Addresses #516.
- 3:44 PM Changeset [3321] by
- Made the pdf generation to only print warnings and errors in the terminal
- 2:22 PM Changeset [3320] by
- Fixes #525 Read "Using the web client"
- 2:22 PM Ticket #525 (Read "Using the web client") closed by
- fixed: (In [3320]) Fixes #525 Read "Using the web client"
- 1:40 PM Changeset [3319] by
- Fixed problem with incorrect links to <sect2> sections.
- 1:40 PM Changeset [3318] by
- Split 'Experiments and analysis' into several files. Wrote 'Scans and …
May 9, 2007:
- 4:11 PM Changeset [3317] by
- Made the guilabels and guibuttons bold in the pdf output
- 3:06 PM Changeset [3316] by
- It is not easier to see error/warning in the output from the docbook.
- 2:35 PM Changeset [3315] by
- Synchronized table of contents for developer documentation with the …
- 1:52 PM Ticket #547 (Read"Import and Export data") closed by
- fixed: (In [3314]) Fixes #547: Read"Import and Export data"
- 1:52 PM Changeset [3314] by
- Fixes #547: Read"Import and Export data"
- 1:22 PM Changeset [3313] by
- Reference #549. First revision of the whole chapter
- 1:03 PM Changeset [3312] by
- Added column to help list that displays help as html.
- 12:43 PM Changeset [3311] by
- Addresses #516.
- 9:18 AM Changeset [3310] by
- References #549. More text, mainly about quota
May 8, 2007:
- 5:11 PM Changeset [3309] by
- config syntax changed
- 2:34 PM Changeset [3308] by
- Wrote "Experiment overview" section in the "Experiment and analysis" …
- 2:30 PM Changeset [3307] by
- Fixed output of <nohelp> tagged parts in HTML and PDF versions.
- 2:22 PM Changeset [3306] by
- Allow parts of texts inside <helptext> tag to be skipped when …
- 1:57 PM Changeset [3305] by
- Added option to not include <helptext> sections in the HTML or PDF …
- 10:04 AM Changeset [3304] by
- Fixes #517: Read resources section
- 10:04 AM Ticket #517 (Read resources section) closed by
- fixed: (In [3304]) Fixes #517: Read resources section
- 9:58 AM Changeset [3303] by
- Do not generate section TOC for non-chunked sect1 sections.
- 8:58 AM Changeset [3302] by
- Added missing images
- 8:57 AM Changeset [3301] by
- Added option to stop the chunking of each sect1 in chapters and to …
May 7, 2007:
- 5:08 PM Changeset [3300] by
- References #549. More text, mainly about groups and roles
- 3:13 PM Changeset [3299] by
- Addresses #516.
- 2:50 PM Changeset [3298] by
- References #526: Write "Projects and the permission system" Now ready …
- 2:45 PM Ticket #582 ('Removed' option doesn't work when listing project items) created by
- 1. You must have a project with at least one item. 2. Go to View -> …
- 1:34 PM Changeset [3297] by
- Do not hide form elements for browsers that can handle layers …
- 1:09 PM Changeset [3296] by
- Changes to make web help texts look better.
- 12:25 PM Changeset [3295] by
- References #525: Write "Using the web client" Now ready for reading.
- 12:10 PM Changeset [3294] by
- Added config file for svndigest.
- 9:20 AM Changeset [3293] by
- Fixing svn prperties.
- 9:18 AM Changeset [3292] by
- Addresses #516. Upgrade instructions writing done.
- 9:17 AM Changeset [3291] by
- Minor changes.
May 4, 2007:
- 4:10 PM Changeset [3290] by
- References #549. More new text
May 3, 2007:
- 11:13 PM Changeset [3289] by
- Create directories needed to build docbook documentation.
- 4:24 PM Changeset [3288] by
- Reference #549. More to come.…
- 9:34 AM Changeset [3287] by
- References #549.
- 9:21 AM Changeset [3286] by
- References #555 Complemented with information about using XsltProc? …
- 8:48 AM Changeset [3285] by
- Fixed docbook-compilation-errors in Windows
May 2, 2007:
- 2:56 PM Changeset [3284] by
- Would hopefully solve the problems to generate the documentation when …
- 1:02 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) created by
- The current code generates this: […] MySQL 4 is having trouble …
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