Timeline



May 19, 2007:

9:56 AM Changeset [3350] by Jari Häkkinen
Addresses #516. Upgrade and installation done.
9:50 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) created by Jari Häkkinen
html is generated properly but then the build script stops with the …

May 16, 2007:

4:47 PM Ticket #606 (Base1PluginExecuter plugin directory) created by Johan Enell
When Base1PluginExecuter detects that the plugin directory doesn't …
4:39 PM Ticket #605 (Illegal characters in directoryname) created by Johan Enell
The method that suggests the plugin directory for the …
4:29 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) created by Johan Enell
The description of a Base1PluginExecuter configuration should be set …
2:57 PM Ticket #603 (Clean up the docbook directory) closed by Martin Svensson
fixed: (In [3349]) Fixes #603 Done some clean-up
2:57 PM Changeset [3349] by Martin Svensson
Fixes #603 Done some clean-up
2:36 PM Changeset [3348] by Nicklas Nordborg
Updated documentation about how to add screenshots
2:24 PM Ticket #603 (Clean up the docbook directory) created by Martin Svensson
There are eg. some subdirectories that aren't need in BASE documentation.
2:19 PM Ticket #594 (Read "Appendix: base.config reference") closed by Martin Svensson
fixed: (In [3347]) Fixes #594 Read "Appendix:base.config ref"
2:19 PM Changeset [3347] by Martin Svensson
Fixes #594 Read "Appendix:base.config ref"
2:10 PM Changeset [3346] by Nicklas Nordborg
Updated docbook PDF generation to use FOP 0.93 instead of 0.20
1:17 PM Changeset [3345] by Martin Svensson
Fixes #548
1:17 PM Ticket #548 (Read "Installing plug-ins" section) closed by Martin Svensson
fixed: (In [3345]) Fixes #548
9:50 AM Changeset [3344] by Martin Svensson
Insert page number in pdf for all xref-elements
8:57 AM Ticket #557 (Read File management doc) closed by Nicklas Nordborg
fixed: (In [3343]) Fixes #557: Read File management doc
8:57 AM Changeset [3343] by Nicklas Nordborg
Fixes #557: Read File management doc
8:19 AM Changeset [3342] by Nicklas Nordborg
Turn off image scaling for HTML output.

May 15, 2007:

8:05 PM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) created by Nicklas Nordborg
See log output: […]
2:08 PM Changeset [3341] by Martin Svensson
References #584 Ready to be read…
1:23 PM Changeset [3340] by Nicklas Nordborg
References #594: Write "Appendix: base.config reference" Now ready …
1:22 PM Ticket #601 (Read "Appendix: jobagent.sh reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:21 PM Ticket #600 (Write "Appendix: Other configuration files") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.otherconf
1:21 PM Ticket #599 (Write "Appendix: migrate.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.migrate.p
1:20 PM Ticket #598 (Read "Appendix: jobagent.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:19 PM Ticket #597 (Read "Appendix: web.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.web.xml.html
1:19 PM Ticket #596 (Read "Appendix: raw-data-types.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/trunk/html/appendix/appendix.rawdata
1:18 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.e
1:18 PM Ticket #594 (Read "Appendix: base.config reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.b
1:17 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.c
1:13 PM Changeset [3339] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section Now ready for …
11:45 AM Changeset [3338] by Nicklas Nordborg
Fixed incorrrect setting in default base.config
10:44 AM Changeset [3337] by Jari Häkkinen
Fixes #592.
10:44 AM Ticket #592 (broken anchors in documentation) closed by Jari Häkkinen
fixed: (In [3337]) Fixes #592.
10:21 AM Ticket #592 (broken anchors in documentation) created by Peter Johansson
I found a couple of broekn anchors in the documentation, for example, …

May 14, 2007:

4:32 PM Changeset [3336] by Johan Enell
Fixes #586
4:32 PM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) closed by Johan Enell
fixed: (In [3336]) Fixes #586
4:18 PM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) closed by Johan Enell
fixed: (In [3335]) fixes #589
4:18 PM Changeset [3335] by Johan Enell
fixes #589
12:15 PM Changeset [3334] by Nicklas Nordborg
Addded some more appendixes to docbook
9:32 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) created by Nicklas Nordborg
Currently you have to choose if you want to use job agents or the …
8:44 AM Ticket #590 (Create test program for BioAsssaySetExporter) created by Nicklas Nordborg
Thers is no test program for the BioAssaySet? exporter. I think it is …
8:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) created by Nicklas Nordborg
Trying to export a bioassayset in serial BASEfile format. After …
8:31 AM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) created by Nicklas Nordborg
When a formula column has been selected for export the …
8:24 AM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) created by Nicklas Nordborg
When exporting a bioassay set in BASEfile format you will get a …
8:21 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) created by Nicklas Nordborg
No formulas will show up in the 'Fields' parameter list when exporting …

May 11, 2007:

5:04 PM Changeset [3333] by Martin Svensson
References #584 Weekend check-in
3:50 PM Ticket #526 (Read "Projects and the permission system") closed by Martin Svensson
fixed: (In [3332]) Fixes #526 Read "Projects and the permission system"
3:50 PM Changeset [3332] by Martin Svensson
Fixes #526 Read "Projects and the permission system"
2:47 PM Ticket #585 (Make the BASE file system pluggable) created by Nicklas Nordborg
The BASE file system is already an abstract thing for client …
2:34 PM Changeset [3331] by Nicklas Nordborg
References #535: Added style for <important> tags
2:31 PM Changeset [3330] by Nicklas Nordborg
References #546: Added spot image screen shot
2:20 PM Changeset [3329] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section
1:45 PM Changeset [3328] by Martin Svensson
References #584
1:44 PM Changeset [3327] by Martin Svensson
References #584
1:32 PM Ticket #584 (Read "Appendix. Menu guide") created by Martin Svensson
This appendix should be a reference for those who quickly wants to …
12:04 PM Changeset [3326] by Martin Svensson
References #549. Moved the helptext-tags inside the sect3-tags to …
9:17 AM Changeset [3325] by Jari Häkkinen
FIxed typo.
9:06 AM Changeset [3324] by Jari Häkkinen
web.gif has disappeared, removed it from the doc.
8:35 AM Ticket #570 (Write "Configuring core plugins" section) closed by Nicklas Nordborg
duplicate: Part of #548: Write "Installing plug-ins" section
8:23 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) closed by Nicklas Nordborg
fixed: Well, it is fixed, but we add missing styles when we find out about them.
8:18 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) created by Nicklas Nordborg
This is currently not allowed because of validation issues. The …

May 10, 2007:

11:08 PM Changeset [3323] by Nicklas Nordborg
Added missing parts of a paragraph.
10:58 PM Changeset [3322] by Jari Häkkinen
Addresses #516.
3:44 PM Changeset [3321] by Martin Svensson
Made the pdf generation to only print warnings and errors in the terminal
2:22 PM Changeset [3320] by Martin Svensson
Fixes #525 Read "Using the web client"
2:22 PM Ticket #525 (Read "Using the web client") closed by Martin Svensson
fixed: (In [3320]) Fixes #525 Read "Using the web client"
1:40 PM Changeset [3319] by Nicklas Nordborg
Fixed problem with incorrect links to <sect2> sections.
1:40 PM Changeset [3318] by Nicklas Nordborg
Split 'Experiments and analysis' into several files. Wrote 'Scans and …

May 9, 2007:

4:11 PM Changeset [3317] by Martin Svensson
Made the guilabels and guibuttons bold in the pdf output
3:06 PM Changeset [3316] by Nicklas Nordborg
It is not easier to see error/warning in the output from the docbook.
2:35 PM Changeset [3315] by Nicklas Nordborg
Synchronized table of contents for developer documentation with the …
1:52 PM Ticket #547 (Read"Import and Export data") closed by Nicklas Nordborg
fixed: (In [3314]) Fixes #547: Read"Import and Export data"
1:52 PM Changeset [3314] by Nicklas Nordborg
Fixes #547: Read"Import and Export data"
1:22 PM Changeset [3313] by Martin Svensson
Reference #549. First revision of the whole chapter
1:03 PM Changeset [3312] by Nicklas Nordborg
Added column to help list that displays help as html.
12:43 PM Changeset [3311] by Jari Häkkinen
Addresses #516.
9:18 AM Changeset [3310] by Martin Svensson
References #549. More text, mainly about quota

May 8, 2007:

5:11 PM Changeset [3309] by Jari Häkkinen
config syntax changed
2:34 PM Changeset [3308] by Nicklas Nordborg
Wrote "Experiment overview" section in the "Experiment and analysis" …
2:30 PM Changeset [3307] by Nicklas Nordborg
Fixed output of <nohelp> tagged parts in HTML and PDF versions.
2:22 PM Changeset [3306] by Nicklas Nordborg
Allow parts of texts inside <helptext> tag to be skipped when …
1:57 PM Changeset [3305] by Nicklas Nordborg
Added option to not include <helptext> sections in the HTML or PDF …
10:04 AM Changeset [3304] by Nicklas Nordborg
Fixes #517: Read resources section
10:04 AM Ticket #517 (Read resources section) closed by Nicklas Nordborg
fixed: (In [3304]) Fixes #517: Read resources section
9:58 AM Changeset [3303] by Nicklas Nordborg
Do not generate section TOC for non-chunked sect1 sections.
8:58 AM Changeset [3302] by Nicklas Nordborg
Added missing images
8:57 AM Changeset [3301] by Nicklas Nordborg
Added option to stop the chunking of each sect1 in chapters and to …

May 7, 2007:

5:08 PM Changeset [3300] by Martin Svensson
References #549. More text, mainly about groups and roles
3:13 PM Changeset [3299] by Jari Häkkinen
Addresses #516.
2:50 PM Changeset [3298] by Nicklas Nordborg
References #526: Write "Projects and the permission system" Now ready …
2:45 PM Ticket #582 ('Removed' option doesn't work when listing project items) created by Nicklas Nordborg
1. You must have a project with at least one item. 2. Go to View -> …
1:34 PM Changeset [3297] by Nicklas Nordborg
Do not hide form elements for browsers that can handle layers …
1:09 PM Changeset [3296] by Nicklas Nordborg
Changes to make web help texts look better.
12:25 PM Changeset [3295] by Nicklas Nordborg
References #525: Write "Using the web client" Now ready for reading.
12:10 PM Changeset [3294] by Jari Häkkinen
Added config file for svndigest.
9:20 AM Changeset [3293] by Jari Häkkinen
Fixing svn prperties.
9:18 AM Changeset [3292] by Jari Häkkinen
Addresses #516. Upgrade instructions writing done.
9:17 AM Changeset [3291] by Jari Häkkinen
Minor changes.

May 4, 2007:

4:10 PM Changeset [3290] by Martin Svensson
References #549. More new text

May 3, 2007:

11:13 PM Changeset [3289] by Nicklas Nordborg
Create directories needed to build docbook documentation.
4:24 PM Changeset [3288] by Martin Svensson
Reference #549. More to come.…
9:34 AM Changeset [3287] by Martin Svensson
References #549.
9:21 AM Changeset [3286] by Martin Svensson
References #555 Complemented with information about using XsltProc?
8:48 AM Changeset [3285] by Martin Svensson
Fixed docbook-compilation-errors in Windows

May 2, 2007:

2:56 PM Changeset [3284] by Martin Svensson
Would hopefully solve the problems to generate the documentation when …
1:02 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) created by Nicklas Nordborg
The current code generates this: […] MySQL 4 is having trouble …

Apr 28, 2007:

1:43 AM Changeset [3283] by Jari Häkkinen
Removing stray carriage returns. Setting proper eol-style.

Apr 27, 2007:

2:58 PM Changeset [3282] by Martin Svensson
Added link elements to used elements
12:30 PM Changeset [3281] by Martin Svensson
References #549. Changed the name of the file and chapter
11:04 AM Ticket #580 (Strange text layout in the docbook pdf-output) closed by Martin Svensson
fixed: *figures to big Avoid this by set some of the size-attributes in …
10:58 AM Changeset [3280] by Martin Svensson
References #580. Added some instructions to get a nice output. Updated …

Apr 26, 2007:

3:02 PM Changeset [3279] by Martin Svensson
References #580. Changed the left and right margins to 20mm(0.79inch)
2:13 PM Changeset [3278] by Nicklas Nordborg
References #555: Added info about <seeother> and <other> tags and …
2:07 PM Changeset [3277] by Martin Svensson
Fixes #536 Generate helptext import file when running ant dist. All …
2:07 PM Ticket #536 (Generate helptext import file when running ant dist) closed by Martin Svensson
fixed: (In [3277]) Fixes #536 Generate helptext import file when running ant …
2:03 PM Ticket #580 (Strange text layout in the docbook pdf-output) created by Martin Svensson
There are some strange layout in the pdf file that is generated from …
1:57 PM Changeset [3276] by Nicklas Nordborg
References #525: Write "Using the web client" Cleaned up first …
1:55 PM Changeset [3275] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
1:23 PM Changeset [3274] by Martin Svensson
References #555. Document ready to be inspected
11:44 AM Changeset [3273] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
11:10 AM Changeset [3272] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
10:28 AM Changeset [3271] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
8:53 AM Ticket #579 (Add link to new documentation in the installation program) closed by Nicklas Nordborg
fixed: (In [3270]) Fixes #579: Add link to new documentation in the …
8:53 AM Changeset [3270] by Nicklas Nordborg
Fixes #579: Add link to new documentation in the installation program
8:49 AM Ticket #579 (Add link to new documentation in the installation program) created by Nicklas Nordborg
There is already an empty slot for such a link.
7:37 AM Changeset [3269] by Nicklas Nordborg
Show 4 levels in table of contents instead of 2

Apr 24, 2007:

8:42 PM Ticket #578 (Update the History function to remember more than one item of each type) created by Nicklas Nordborg
Currently the history function (displayed on the menu) can remember …
5:37 PM Changeset [3268] by Martin Svensson
References #555. Started to list the elements that are used in the …
4:35 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) created by base
Relates to ticket:252. Just got this error while emptying the trash. …
12:50 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) created by base
How to reproduce this minor bug: 1. try to import faulty data (e.g. …
11:31 AM Changeset [3267] by Jari Häkkinen
Merged log:trunk#3194:3266 into the webservices branch.
11:23 AM Milestone BASE 2.2.3 completed
Bug fixes for the 2.2.2 release.
11:22 AM Changeset [3266] by Jari Häkkinen
Removed obsolete branch.
12:28 AM Ticket #575 (Spot image generator creates file with invalid size in database) created by Nicklas Nordborg
The file containing the zipped spot images is written correctly to …

Apr 23, 2007:

9:05 PM Ticket #574 (Handle database differences with case sensitivity) created by Nicklas Nordborg
Relates ticket:573 From the maling list by Bob MacCallum: …
9:01 PM Ticket #573 (Trim whitespace when checking for unique values) created by Nicklas Nordborg
Relates to ticket:574 and ticket:469 From the mailing list by Bob …
5:01 PM Changeset [3265] by Martin Svensson
References #555. Started to describe the most common tags that are …
4:48 PM Changeset [3264] by Johan Enell
Merged log:branches/2.2.3#3188:3260 to trunk.
4:13 PM DownloadPage edited by Jari Häkkinen
2.2.3 released. (diff)
3:58 PM Ticket #572 (genepix raw data importer config typo) created by base
"Percent pixels within 1 standard deviation" "Percent pixels within 2 …
2:38 PM Changeset [3263] by Martin Svensson
References #555. Updated the documentation about adding helptext-tags …
10:32 AM Changeset [3262] by Jari Häkkinen
Tagging version 2.2.3
10:06 AM Changeset [3261] by Jari Häkkinen
Bumped version number.
9:46 AM Ticket #537 (Import documentation helptexts when installing BASE2) closed by Martin Svensson
fixed: (In [3260]) Fixes #537. Import documentation helptexts when installing …
9:46 AM Changeset [3260] by Martin Svensson
Fixes #537. Import documentation helptexts when installing BASE2

Apr 20, 2007:

8:25 PM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) created by Nicklas Nordborg
The current implementation always uses them in the order they appear. …
3:27 PM Changeset [3259] by Martin Svensson
References #536. Set SVN to ignore the generated helptext file. …
2:31 PM Changeset [3258] by Martin Svensson
References #537. Removed the old file with helptexts, this will later …
1:48 PM Changeset [3257] by Martin Svensson
References #517. Resources text ready for reading
1:25 PM Ticket #570 (Write "Configuring core plugins" section) created by Jari Häkkinen
1:23 PM Changeset [3256] by Jari Häkkinen
Added chapter on configuration of core plugins.
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