Timeline



May 16, 2007:

4:50 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Johan Enell
Owner changed
4:50 PM Ticket #503 (Display more info about items in Experiment overview) updated by Johan Enell
Owner changed
4:49 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by Johan Enell
Version, Component changed
4:47 PM Ticket #606 (Base1PluginExecuter plugin directory) created by Johan Enell
When Base1PluginExecuter detects that the plugin directory doesn't …
4:39 PM Ticket #605 (Illegal characters in directoryname) created by Johan Enell
The method that suggests the plugin directory for the …
4:29 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) created by Johan Enell
The description of a Base1PluginExecuter configuration should be set …
2:57 PM Ticket #603 (Clean up the docbook directory) closed by Martin Svensson
fixed: (In [3349]) Fixes #603 Done some clean-up
2:57 PM Changeset [3349] by Martin Svensson
Fixes #603 Done some clean-up
2:36 PM Changeset [3348] by Nicklas Nordborg
Updated documentation about how to add screenshots
2:24 PM Ticket #603 (Clean up the docbook directory) updated by Martin Svensson
Status changed
2:24 PM Ticket #603 (Clean up the docbook directory) created by Martin Svensson
There are eg. some subdirectories that aren't need in BASE documentation.
2:19 PM Ticket #594 (Read "Appendix: base.config reference") closed by Martin Svensson
fixed: (In [3347]) Fixes #594 Read "Appendix:base.config ref"
2:19 PM Changeset [3347] by Martin Svensson
Fixes #594 Read "Appendix:base.config ref"
2:10 PM Changeset [3346] by Nicklas Nordborg
Updated docbook PDF generation to use FOP 0.93 instead of 0.20
1:18 PM Ticket #594 (Read "Appendix: base.config reference") updated by Martin Svensson
Owner, Status changed
1:17 PM Changeset [3345] by Martin Svensson
Fixes #548
1:17 PM Ticket #548 (Read "Installing plug-ins" section) closed by Martin Svensson
fixed: (In [3345]) Fixes #548
9:50 AM Changeset [3344] by Martin Svensson
Insert page number in pdf for all xref-elements
8:57 AM Ticket #557 (Read File management doc) closed by Nicklas Nordborg
fixed: (In [3343]) Fixes #557: Read File management doc
8:57 AM Changeset [3343] by Nicklas Nordborg
Fixes #557: Read File management doc
8:19 AM Changeset [3342] by Nicklas Nordborg
Turn off image scaling for HTML output.

May 15, 2007:

8:05 PM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) created by Nicklas Nordborg
See log output: […]
2:21 PM Ticket #548 (Read "Installing plug-ins" section) updated by Martin Svensson
Status, Owner changed
2:09 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Priority, Summary, Status, Owner changed
2:08 PM Changeset [3341] by Martin Svensson
References #584 Ready to be read…
2:08 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3341]) References #584 Ready to be read…
1:28 PM Ticket #557 (Read File management doc) updated by Nicklas Nordborg
Status, Description, Owner changed
1:23 PM Ticket #594 (Read "Appendix: base.config reference") updated by Nicklas Nordborg
Priority, Summary changed
1:23 PM Changeset [3340] by Nicklas Nordborg
References #594: Write "Appendix: base.config reference" Now ready …
1:23 PM Ticket #594 (Read "Appendix: base.config reference") updated by Nicklas Nordborg
(In [3340]) References #594: Write "Appendix: base.config reference" …
1:22 PM Ticket #601 (Read "Appendix: jobagent.sh reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:21 PM Ticket #600 (Write "Appendix: Other configuration files") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.otherconf
1:21 PM Ticket #599 (Write "Appendix: migrate.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.migrate.p
1:20 PM Ticket #598 (Read "Appendix: jobagent.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:19 PM Ticket #597 (Read "Appendix: web.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.web.xml.html
1:19 PM Ticket #596 (Read "Appendix: raw-data-types.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/trunk/html/appendix/appendix.rawdata
1:18 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.e
1:18 PM Ticket #594 (Read "Appendix: base.config reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.b
1:17 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.c
1:14 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Description, Priority, Owner, Status, Summary changed
1:13 PM Changeset [3339] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section Now ready for …
1:13 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
(In [3339]) References #548: Write "Installing plug-ins" section Now …
11:45 AM Changeset [3338] by Nicklas Nordborg
Fixed incorrrect setting in default base.config
10:44 AM Changeset [3337] by Jari Häkkinen
Fixes #592.
10:44 AM Ticket #592 (broken anchors in documentation) closed by Jari Häkkinen
fixed: (In [3337]) Fixes #592.
10:44 AM Ticket #592 (broken anchors in documentation) updated by Jari Häkkinen
Owner, Milestone, Status changed
10:21 AM Ticket #592 (broken anchors in documentation) created by Peter Johansson
I found a couple of broekn anchors in the documentation, for example, …
7:56 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) updated by Nicklas Nordborg
Milestone changed
7:56 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by Nicklas Nordborg
Milestone changed

May 14, 2007:

4:32 PM Changeset [3336] by Johan Enell
Fixes #586
4:32 PM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) closed by Johan Enell
fixed: (In [3336]) Fixes #586
4:18 PM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) closed by Johan Enell
fixed: (In [3335]) fixes #589
4:18 PM Changeset [3335] by Johan Enell
fixes #589
3:27 PM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by Johan Enell
Owner changed
3:26 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Johan Enell
Owner changed
12:15 PM Changeset [3334] by Nicklas Nordborg
Addded some more appendixes to docbook
9:32 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) created by Nicklas Nordborg
Currently you have to choose if you want to use job agents or the …
9:14 AM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) updated by Nicklas Nordborg
Milestone changed
9:14 AM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) updated by Nicklas Nordborg
Milestone changed
9:09 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
Description changed
9:09 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
Description, Summary changed
9:07 AM Ticket #575 (Spot image generator creates file with invalid size in database) updated by Nicklas Nordborg
Milestone changed
8:54 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by Nicklas Nordborg
Description changed
8:44 AM Ticket #590 (Create test program for BioAsssaySetExporter) created by Nicklas Nordborg
Thers is no test program for the BioAssaySet exporter. I think it is …
8:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) created by Nicklas Nordborg
Trying to export a bioassayset in serial BASEfile format. After …
8:31 AM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) created by Nicklas Nordborg
When a formula column has been selected for export the …
8:25 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) updated by Nicklas Nordborg
Description changed
8:24 AM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) created by Nicklas Nordborg
When exporting a bioassay set in BASEfile format you will get a …
8:21 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) created by Nicklas Nordborg
No formulas will show up in the 'Fields' parameter list when exporting …

May 11, 2007:

5:04 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3333]) References #584 Weekend check-in
5:04 PM Changeset [3333] by Martin Svensson
References #584 Weekend check-in
3:57 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Status changed
3:50 PM Ticket #526 (Read "Projects and the permission system") closed by Martin Svensson
fixed: (In [3332]) Fixes #526 Read "Projects and the permission system"
3:50 PM Changeset [3332] by Martin Svensson
Fixes #526 Read "Projects and the permission system"
2:47 PM Ticket #585 (Make the BASE file system pluggable) created by Nicklas Nordborg
The BASE file system is already an abstract thing for client …
2:34 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Status changed
2:34 PM Changeset [3331] by Nicklas Nordborg
References #535: Added style for <important> tags
2:34 PM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3331]) References #535: Added style for <important> tags
2:31 PM Changeset [3330] by Nicklas Nordborg
References #546: Added spot image screen shot
2:31 PM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
(In [3330]) References #546: Added spot image screen shot
2:20 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
(In [3329]) References #548: Write "Installing plug-ins" section
2:20 PM Changeset [3329] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section
1:45 PM Changeset [3328] by Martin Svensson
References #584
1:45 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3328]) References #584
1:44 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3327]) References #584
1:44 PM Changeset [3327] by Martin Svensson
References #584
1:40 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Description changed
1:39 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Description changed
1:32 PM Ticket #584 (Read "Appendix. Menu guide") created by Martin Svensson
This appendix should be a reference for those who quickly wants to …
12:06 PM Ticket #526 (Read "Projects and the permission system") updated by Martin Svensson
Status, Owner changed
12:04 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Priority, Owner, Status, Summary changed
12:04 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3326]) References #549. Moved the helptext-tags inside the …
12:04 PM Changeset [3326] by Martin Svensson
References #549. Moved the helptext-tags inside the sect3-tags to …
9:28 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Nicklas Nordborg
Type changed
A first step in this direction would be to make it easier to register …
9:17 AM Changeset [3325] by Jari Häkkinen
FIxed typo.
9:06 AM Changeset [3324] by Jari Häkkinen
web.gif has disappeared, removed it from the doc.
8:46 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Owner, Priority, Status, Summary changed
The helptexts in the chapter has to be re-organized.
8:35 AM Ticket #570 (Write "Configuring core plugins" section) closed by Nicklas Nordborg
duplicate: Part of #548: Write "Installing plug-ins" section
8:34 AM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Description, Priority, Owner, Status, Summary changed
The current text was very developer-centric. Needs to be rewritten.
8:23 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) closed by Nicklas Nordborg
fixed: Well, it is fixed, but we add missing styles when we find out about them.
8:18 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) created by Nicklas Nordborg
This is currently not allowed because of validation issues. The …
8:03 AM Ticket #548 (Read "Installing plug-ins" section) updated by Martin Svensson
Summary, Status, Owner changed

May 10, 2007:

11:08 PM Changeset [3323] by Nicklas Nordborg
Added missing parts of a paragraph.
10:58 PM Changeset [3322] by Jari Häkkinen
Addresses #516.
10:58 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3322]) Addresses #516.
3:44 PM Changeset [3321] by Martin Svensson
Made the pdf generation to only print warnings and errors in the terminal
2:22 PM Changeset [3320] by Martin Svensson
Fixes #525 Read "Using the web client"
2:22 PM Ticket #525 (Read "Using the web client") closed by Martin Svensson
fixed: (In [3320]) Fixes #525 Read "Using the web client"
1:43 PM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Status, Owner changed
Handing this over to someone else with more knowledge of such things.
1:40 PM Changeset [3319] by Nicklas Nordborg
Fixed problem with incorrect links to <sect2> sections.
1:40 PM Changeset [3318] by Nicklas Nordborg
Split 'Experiments and analysis' into several files. Wrote 'Scans and …

May 9, 2007:

4:11 PM Changeset [3317] by Martin Svensson
Made the guilabels and guibuttons bold in the pdf output
3:06 PM Changeset [3316] by Nicklas Nordborg
It is not easier to see error/warning in the output from the docbook.
2:35 PM Changeset [3315] by Nicklas Nordborg
Synchronized table of contents for developer documentation with the …
1:52 PM Ticket #547 (Read"Import and Export data") closed by Nicklas Nordborg
fixed: (In [3314]) Fixes #547: Read"Import and Export data"
1:52 PM Changeset [3314] by Nicklas Nordborg
Fixes #547: Read"Import and Export data"
1:32 PM Ticket #525 (Read "Using the web client") updated by Martin Svensson
Owner, Status changed
1:30 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Status, Priority, Owner, Summary changed
Chapter ready to be read.
1:22 PM Changeset [3313] by Martin Svensson
Reference #549. First revision of the whole chapter
1:03 PM Changeset [3312] by Nicklas Nordborg
Added column to help list that displays help as html.
12:43 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3311]) Addresses #516.
12:43 PM Changeset [3311] by Jari Häkkinen
Addresses #516.
9:18 AM Changeset [3310] by Martin Svensson
References #549. More text, mainly about quota
9:18 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3310]) References #549. More text, mainly about quota

May 8, 2007:

5:11 PM Changeset [3309] by Jari Häkkinen
config syntax changed
3:37 PM Ticket #547 (Read"Import and Export data") updated by Nicklas Nordborg
Status, Description, Owner changed
2:34 PM Changeset [3308] by Nicklas Nordborg
Wrote "Experiment overview" section in the "Experiment and analysis" …
2:30 PM Changeset [3307] by Nicklas Nordborg
Fixed output of <nohelp> tagged parts in HTML and PDF versions.
2:22 PM Changeset [3306] by Nicklas Nordborg
Allow parts of texts inside <helptext> tag to be skipped when …
1:57 PM Changeset [3305] by Nicklas Nordborg
Added option to not include <helptext> sections in the HTML or PDF …
11:00 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Description changed
11:00 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Status, Owner changed
10:04 AM Changeset [3304] by Nicklas Nordborg
Fixes #517: Read resources section
10:04 AM Ticket #517 (Read resources section) closed by Nicklas Nordborg
fixed: (In [3304]) Fixes #517: Read resources section
9:58 AM Changeset [3303] by Nicklas Nordborg
Do not generate section TOC for non-chunked sect1 sections.
8:58 AM Changeset [3302] by Nicklas Nordborg
Added missing images
8:57 AM Changeset [3301] by Nicklas Nordborg
Added option to stop the chunking of each sect1 in chapters and to …

May 7, 2007:

5:08 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3300]) References #549. More text, mainly about groups and roles
5:08 PM Changeset [3300] by Martin Svensson
References #549. More text, mainly about groups and roles
3:36 PM Ticket #517 (Read resources section) updated by Nicklas Nordborg
Owner, Status changed
3:13 PM Changeset [3299] by Jari Häkkinen
Addresses #516.
3:13 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3299]) Addresses #516.
2:52 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
Owner changed
2:51 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
Description, Status, Summary, Priority changed
2:50 PM Changeset [3298] by Nicklas Nordborg
References #526: Write "Projects and the permission system" Now ready …
2:50 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
(In [3298]) References #526: Write "Projects and the permission …
2:45 PM Ticket #582 ('Removed' option doesn't work when listing project items) created by Nicklas Nordborg
1. You must have a project with at least one item. 2. Go to View -> …
1:34 PM Changeset [3297] by Nicklas Nordborg
Do not hide form elements for browsers that can handle layers …
1:09 PM Changeset [3296] by Nicklas Nordborg
Changes to make web help texts look better.
12:27 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
Description, Priority, Owner, Status, Summary changed
12:25 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
(In [3295]) References #525: Write "Using the web client" Now ready …
12:25 PM Changeset [3295] by Nicklas Nordborg
References #525: Write "Using the web client" Now ready for reading.
12:10 PM Changeset [3294] by Jari Häkkinen
Added config file for svndigest.
10:12 AM Ticket #548 (Read "Installing plug-ins" section) updated by Jari Häkkinen
Priority changed
9:20 AM Changeset [3293] by Jari Häkkinen
Fixing svn prperties.
9:18 AM Changeset [3292] by Jari Häkkinen
Addresses #516. Upgrade instructions writing done.
9:18 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3292]) Addresses #516. Upgrade instructions writing done.
9:17 AM Changeset [3291] by Jari Häkkinen
Minor changes.

May 4, 2007:

4:10 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3290]) References #549. More new text
4:10 PM Changeset [3290] by Martin Svensson
References #549. More new text

May 3, 2007:

11:13 PM Changeset [3289] by Nicklas Nordborg
Create directories needed to build docbook documentation.
4:24 PM Changeset [3288] by Martin Svensson
Reference #549. More to come.…
9:34 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3287]) References #549.
9:34 AM Changeset [3287] by Martin Svensson
References #549.
9:21 AM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3286]) References #555 Complemented with information about using …
9:21 AM Changeset [3286] by Martin Svensson
References #555 Complemented with information about using XsltProc
8:48 AM Changeset [3285] by Martin Svensson
Fixed docbook-compilation-errors in Windows

May 2, 2007:

2:56 PM Changeset [3284] by Martin Svensson
Would hopefully solve the problems to generate the documentation when …
1:30 PM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) updated by Nicklas Nordborg
I think for this problem to solved in a proper manner we must change …
1:02 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) created by Nicklas Nordborg
The current code generates this: […] MySQL 4 is having trouble …

Apr 28, 2007:

1:43 AM Changeset [3283] by Jari Häkkinen
Removing stray carriage returns. Setting proper eol-style.

Apr 27, 2007:

2:58 PM Changeset [3282] by Martin Svensson
Added link elements to used elements
1:46 PM Ticket #533 (Read "Reporters" section.) updated by Jari Häkkinen
Status, Owner changed
Assigned the ticket in behalf of Philippe.
1:45 PM Ticket #565 (Read "Array LIMS" section) updated by Jari Häkkinen
Status, Owner changed
Assigned the ticket in behalf of Philippe.
1:44 PM Ticket #545 (Read "Biomaterials" section.) updated by Jari Häkkinen
Assigned the ticket in behalf of Philippe.
1:43 PM Ticket #542 (Read "Hardware" section.) updated by Jari Häkkinen
Owner, Status changed
Assigned the ticket in behalf of Philippe.
1:43 PM Ticket #543 (Read "Software" section.) updated by Jari Häkkinen
Owner, Status changed
Assigned the ticket in behalf of Philippe.
1:43 PM Ticket #540 (Read "Protocols" section) updated by Jari Häkkinen
Owner, Status changed
Assigned the ticket in behalf of Philippe.
1:43 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Description changed
1:41 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Summary, Description changed
12:30 PM Changeset [3281] by Martin Svensson
References #549. Changed the name of the file and chapter
12:30 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3281]) References #549. Changed the name of the file and chapter
12:27 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Status, Owner changed
11:04 AM Ticket #580 (Strange text layout in the docbook pdf-output) closed by Martin Svensson
fixed: *figures to big Avoid this by set some of the size-attributes in …
10:58 AM Ticket #580 (Strange text layout in the docbook pdf-output) updated by Martin Svensson
(In [3280]) References #580. Added some instructions to get a nice …
10:58 AM Changeset [3280] by Martin Svensson
References #580. Added some instructions to get a nice output. Updated …

Apr 26, 2007:

3:02 PM Changeset [3279] by Martin Svensson
References #580. Changed the left and right margins to 20mm(0.79inch)
3:02 PM Ticket #580 (Strange text layout in the docbook pdf-output) updated by Martin Svensson
(In [3279]) References #580. Changed the left and right margins to …
2:13 PM Changeset [3278] by Nicklas Nordborg
References #555: Added info about <seeother> and <other> tags and …
2:13 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Nicklas Nordborg
(In [3278]) References #555: Added info about <seeother> and <other> …
2:07 PM Changeset [3277] by Martin Svensson
Fixes #536 Generate helptext import file when running ant dist. All …
2:07 PM Ticket #536 (Generate helptext import file when running ant dist) closed by Martin Svensson
fixed: (In [3277]) Fixes #536 Generate helptext import file when running ant …
2:03 PM Ticket #580 (Strange text layout in the docbook pdf-output) updated by Martin Svensson
Status changed
2:03 PM Ticket #580 (Strange text layout in the docbook pdf-output) created by Martin Svensson
There are some strange layout in the pdf file that is generated from …
1:57 PM Changeset [3276] by Nicklas Nordborg
References #525: Write "Using the web client" Cleaned up first …
1:57 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
(In [3276]) References #525: Write "Using the web client" Cleaned up …
1:55 PM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3275]) References #535: Use docbook's stylesheet in BASE2's …
1:55 PM Changeset [3275] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
1:28 PM Ticket #536 (Generate helptext import file when running ant dist) updated by Martin Svensson
Status changed
1:24 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
Owner, Summary, Status, Priority changed
1:23 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3274]) References #555. Document ready to be inspected
1:23 PM Changeset [3274] by Martin Svensson
References #555. Document ready to be inspected
11:44 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3273]) References #535: Use docbook's stylesheet in BASE2's …
11:44 AM Changeset [3273] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
11:10 AM Changeset [3272] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
11:10 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3272]) References #535: Use docbook's stylesheet in BASE2's …
10:28 AM Changeset [3271] by Nicklas Nordborg
References #535: Use docbook's stylesheet in BASE2's helptexts …
10:28 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3271]) References #535: Use docbook's stylesheet in BASE2's …
8:53 AM Ticket #579 (Add link to new documentation in the installation program) closed by Nicklas Nordborg
fixed: (In [3270]) Fixes #579: Add link to new documentation in the …
8:53 AM Changeset [3270] by Nicklas Nordborg
Fixes #579: Add link to new documentation in the installation program
8:49 AM Ticket #579 (Add link to new documentation in the installation program) created by Nicklas Nordborg
There is already an empty slot for such a link.
7:37 AM Changeset [3269] by Nicklas Nordborg
Show 4 levels in table of contents instead of 2

Apr 24, 2007:

8:42 PM Ticket #578 (Update the History function to remember more than one item of each type) created by Nicklas Nordborg
Currently the history function (displayed on the menu) can remember …
8:35 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) updated by Nicklas Nordborg
Milestone changed
I can verify this problem. Actually, it remembers the last file ID …
8:24 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by Nicklas Nordborg
Component, Owner, Milestone changed
> Experiment first, then raw bioassays works fine, although the 57 …
5:37 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3268]) References #555. Started to list the elements that are …
5:37 PM Changeset [3268] by Martin Svensson
References #555. Started to list the elements that are used in the …
4:53 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) updated by base
or I suppose it could have been a problem deleting files and their …
4:35 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) created by base
Relates to ticket:252. Just got this error while emptying the trash. …
3:48 PM Ticket #337 (Tab2Mage export plugin) updated by base
Or probably MAGE-TAB (Bob)
3:47 PM Ticket #338 (Tab2Mage import plugin) updated by base
Or probably MAGE-TAB (Bob)
12:50 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) created by base
How to reproduce this minor bug: 1. try to import faulty data (e.g. …
11:31 AM Changeset [3267] by Jari Häkkinen
Merged log:trunk#3194:3266 into the webservices branch.
11:23 AM Milestone BASE 2.2.3 completed
Bug fixes for the 2.2.2 release.
11:22 AM Changeset [3266] by Jari Häkkinen
Removed obsolete branch.
10:20 AM Ticket #575 (Spot image generator creates file with invalid size in database) updated by Nicklas Nordborg
Priority changed
The problem is in the File class. The File.UploadStream incorrectly …
12:28 AM Ticket #575 (Spot image generator creates file with invalid size in database) created by Nicklas Nordborg
The file containing the zipped spot images is written correctly to …

Apr 23, 2007:

9:11 PM Ticket #572 (genepix raw data importer config typo) updated by Nicklas Nordborg
Milestone changed
Maybe it's a good idea to check that the rest of the columns also are …
9:05 PM Ticket #574 (Handle database differences with case sensitivity) created by Nicklas Nordborg
Relates ticket:573 From the maling list by Bob MacCallum: …
9:01 PM Ticket #573 (Trim whitespace when checking for unique values) created by Nicklas Nordborg
Relates to ticket:574 and ticket:469 From the mailing list by Bob …
5:01 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3265]) References #555. Started to describe the most common tags …
5:01 PM Changeset [3265] by Martin Svensson
References #555. Started to describe the most common tags that are …
4:48 PM Changeset [3264] by Johan Enell
Merged log:branches/2.2.3#3188:3260 to trunk.
4:13 PM DownloadPage edited by Jari Häkkinen
2.2.3 released. (diff)
3:58 PM Ticket #572 (genepix raw data importer config typo) created by base
"Percent pixels within 1 standard deviation" "Percent pixels within 2 …
2:38 PM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3263]) References #555. Updated the documentation about adding …
2:38 PM Changeset [3263] by Martin Svensson
References #555. Updated the documentation about adding helptext-tags …
10:32 AM Changeset [3262] by Jari Häkkinen
Tagging version 2.2.3
10:06 AM Changeset [3261] by Jari Häkkinen
Bumped version number.
9:53 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Martin Svensson
Include an explanation about 'helptext.update' parameter in …
9:46 AM Ticket #537 (Import documentation helptexts when installing BASE2) closed by Martin Svensson
fixed: (In [3260]) Fixes #537. Import documentation helptexts when installing …
9:46 AM Changeset [3260] by Martin Svensson
Fixes #537. Import documentation helptexts when installing BASE2

Apr 20, 2007:

8:25 PM Ticket #571 (Allow spot image generator to use any layer in multi-image TIFF file) created by Nicklas Nordborg
The current implementation always uses them in the order they appear. …
3:27 PM Ticket #536 (Generate helptext import file when running ant dist) updated by Martin Svensson
(In [3259]) References #536. Set SVN to ignore the generated helptext …
3:27 PM Changeset [3259] by Martin Svensson
References #536. Set SVN to ignore the generated helptext file. …
2:31 PM Changeset [3258] by Martin Svensson
References #537. Removed the old file with helptexts, this will later …
2:31 PM Ticket #537 (Import documentation helptexts when installing BASE2) updated by Martin Svensson
(In [3258]) References #537. Removed the old file with helptexts, this …
2:29 PM Ticket #537 (Import documentation helptexts when installing BASE2) updated by Martin Svensson
Status changed
1:50 PM Ticket #517 (Read resources section) updated by Martin Svensson
Owner, Priority, Version, Status, Summary changed
1:48 PM Ticket #517 (Read resources section) updated by Martin Svensson
(In [3257]) References #517. Resources text ready for reading
1:48 PM Changeset [3257] by Martin Svensson
References #517. Resources text ready for reading
1:25 PM Ticket #570 (Write "Configuring core plugins" section) updated by Jari Häkkinen
Priority changed
1:25 PM Ticket #570 (Write "Configuring core plugins" section) created by Jari Häkkinen
1:23 PM Changeset [3256] by Jari Häkkinen
Added chapter on configuration of core plugins.

Apr 19, 2007:

4:27 PM Ticket #517 (Read resources section) updated by Martin Svensson
(In [3255]) References #517. More text to the resources-chapter
4:27 PM Changeset [3255] by Martin Svensson
References #517. More text to the resources-chapter
12:59 PM Changeset [3254] by Martin Svensson
Set the url of ulinks to be showed as footnotes.

Apr 18, 2007:

10:39 PM Ticket #569 (Home page display incorrect values for assigned primary quota) closed by Nicklas Nordborg
fixed: (In [3253]) Fixes #569: Home page display incorrect values for …
10:38 PM Changeset [3253] by Nicklas Nordborg
Fixes #569: Home page display incorrect values for assigned primary quota
10:36 PM Ticket #569 (Home page display incorrect values for assigned primary quota) created by Nicklas Nordborg
The assigned primary quota column displays the same values as the …
5:30 PM Ticket #557 (Read File management doc) updated by Martin Svensson
(In [3252]) References #557. Missing word
5:30 PM Changeset [3252] by Martin Svensson
References #557. Missing word
5:27 PM Ticket #517 (Read resources section) updated by Martin Svensson
Description changed
5:25 PM Ticket #517 (Read resources section) updated by Martin Svensson
(In [3251]) References #517 First few rows in the resources-chapter
5:25 PM Changeset [3251] by Martin Svensson
References #517 First few rows in the resources-chapter
4:38 PM Changeset [3250] by Martin Svensson
Removed lists of figures and examples from the table of content …
4:13 PM Ticket #521 (Add creation of PDF document of the BASE docbook) closed by Martin Svensson
fixed: (In [3249]) Fixes #521. Add creation of PDF document
4:13 PM Changeset [3249] by Martin Svensson
Fixes #521. Add creation of PDF document
10:32 AM Ticket #567 (jdk6 (1.6.0) compatibility) updated by Nicklas Nordborg
Milestone changed
Not at all. It is good to have them in the Trac so we don't loose the …
10:30 AM Ticket #568 (Update MySQL JDBC driver to 5.0.6 when it is released) created by Nicklas Nordborg
This includes a fix for the problem that caused #488. The same problem …
9:02 AM Ticket #521 (Add creation of PDF document of the BASE docbook) updated by Martin Svensson
Description changed

Apr 17, 2007:

9:39 PM Ticket #567 (jdk6 (1.6.0) compatibility) updated by base
Hi Nicklas. Your comments prompted me to look again at my …
8:14 PM Ticket #564 (Add support for filtering against null values in JEP) updated by Nicklas Nordborg
David Waring has submitted some code fixes on the mailing list. …
8:11 PM Ticket #567 (jdk6 (1.6.0) compatibility) updated by Nicklas Nordborg
Owner, Component changed
Thanks for the diffs. Strange though that it worked before 2.2.2. The …
6:15 PM JarClassLoader.java.diff attached to Ticket #567 by base
JarClassLoader.java diff
6:14 PM ClassUtil.java.diff attached to Ticket #567 by base
ClassUtil.java diff
6:11 PM Ticket #567 (jdk6 (1.6.0) compatibility) created by base
We were compiling the source with jdk1.6.0 with no problems up to BASE …
2:10 PM Ticket #517 (Read resources section) updated by Martin Svensson
Status, Owner changed
2:04 PM Changeset [3248] by Martin Svensson
Fixes #539. Change the message when failing with connecting to a DB, …
2:04 PM Ticket #539 (Change the message when failing with connecting to a DB to be more clear) closed by Martin Svensson
fixed: (In [3248]) Fixes #539. Change the message when failing with …
9:46 AM Ticket #539 (Change the message when failing with connecting to a DB to be more clear) updated by Martin Svensson
Status changed
9:45 AM Changeset [3247] by Martin Svensson
The output subdirectories will be created before running the xsltproc

Apr 16, 2007:

4:12 PM Changeset [3246] by Martin Svensson
The output files of docbook will be sorted into subdirectories and …
2:38 PM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) created by Nicklas Nordborg
Most mappings are from a single file column to a single data base …
1:50 PM Changeset [3245] by Nicklas Nordborg
References #526: Write "Projects and the permission system"
1:50 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
(In [3245]) References #526: Write "Projects and the permission system"
11:58 AM Changeset [3244] by Nicklas Nordborg
Made it possible to generate docbook html and pdf independently of …
10:53 AM Ticket #565 (Read "Array LIMS" section) updated by Jari Häkkinen
Summary changed
10:50 AM Ticket #557 (Read File management doc) updated by Jari Häkkinen
Priority changed
10:50 AM Ticket #554 (Write "Core developer reference.") updated by Jari Häkkinen
Priority changed
10:50 AM Ticket #553 (Read "Javadoc" section) updated by Jari Häkkinen
Priority changed
10:50 AM Ticket #552 (Write "API overview" section) updated by Jari Häkkinen
Priority changed
10:49 AM Ticket #551 (Read "Plugin developer" section) updated by Jari Häkkinen
Priority changed
10:49 AM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) updated by Jari Häkkinen
Priority changed
10:48 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Jari Häkkinen
Priority changed
10:48 AM Ticket #548 (Read "Installing plug-ins" section) updated by Jari Häkkinen
Priority changed
10:48 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Jari Häkkinen
Priority changed
10:47 AM Ticket #547 (Read"Import and Export data") updated by Jari Häkkinen
Priority changed
10:46 AM Ticket #565 (Read "Array LIMS" section) created by Jari Häkkinen
10:45 AM Ticket #544 (Write "Array LIMS" section.) updated by Jari Häkkinen
Priority changed
10:44 AM Ticket #543 (Read "Software" section.) updated by Jari Häkkinen
Priority changed
10:44 AM Ticket #542 (Read "Hardware" section.) updated by Jari Häkkinen
Priority changed
10:44 AM Ticket #540 (Read "Protocols" section) updated by Jari Häkkinen
Priority changed
10:44 AM Ticket #537 (Import documentation helptexts when installing BASE2) updated by Jari Häkkinen
Priority, Description changed
Currently only new help text are imported when performing an update of …
10:37 AM Ticket #536 (Generate helptext import file when running ant dist) updated by Jari Häkkinen
Priority changed
10:37 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Jari Häkkinen
Priority changed
10:36 AM Ticket #534 (Read "Annotations" section.) updated by Jari Häkkinen
Priority changed
10:36 AM Ticket #533 (Read "Reporters" section.) updated by Jari Häkkinen
Priority changed
10:35 AM Ticket #532 (Read "Jobs" section) updated by Jari Häkkinen
Priority changed
10:35 AM Ticket #527 (Read "Trashcan" section.) updated by Jari Häkkinen
Priority changed
10:34 AM Ticket #526 (Read "Projects and the permission system") updated by Jari Häkkinen
Priority changed
10:34 AM Ticket #525 (Read "Using the web client") updated by Jari Häkkinen
Priority changed
10:34 AM Ticket #524 (Read "Overview of user documentation" section) updated by Jari Häkkinen
Priority changed
10:30 AM Ticket #521 (Add creation of PDF document of the BASE docbook) updated by Jari Häkkinen
Priority changed
10:30 AM Ticket #517 (Read resources section) updated by Jari Häkkinen
Priority changed
10:30 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Priority changed
10:29 AM Ticket #500 (Document the Include class) closed by Jari Häkkinen
duplicate: This is a duplicate of ticket:553
10:27 AM Ticket #333 (Administrator documentation) closed by Jari Häkkinen
duplicate: This has been split into several documentation tickets.
10:25 AM Ticket #146 (Add help text to the web gui) closed by Jari Häkkinen
duplicate: This is a part of the different documentation.
10:24 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) updated by Jari Häkkinen
Priority changed
10:24 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) updated by Jari Häkkinen
Priority changed
10:24 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by Jari Häkkinen
Priority changed
10:23 AM Ticket #547 (Read"Import and Export data") updated by Jari Häkkinen
Priority changed
10:22 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Jari Häkkinen
Milestone changed
8:45 AM Ticket #559 (Editing file type GUI behaves strangely) closed by Martin Svensson
fixed: (In [3243]) Fixes #559 Editing file type GUI behaves strangely
8:45 AM Changeset [3243] by Martin Svensson
Fixes #559 Editing file type GUI behaves strangely
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