Timeline



Mar 19, 2007:

6:35 PM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) created by base
For Annotating 10 Samples with 10 Annotation Type values / samples, …
5:06 PM Ticket #518 (Database version in about view) created by Johan Enell
The sql database version should be displayed in the about view.
2:31 PM Changeset [3197] by Nicklas Nordborg
More documentation about the web client
9:10 AM Ticket #517 (Read resources section) created by Jari Häkkinen
We should have a section describing the available resources such as …
9:05 AM Ticket #515 (Add date of html pages generation to the first page) updated by Jari Häkkinen
Type changed
9:05 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Status, Component changed
9:05 AM Ticket #516 (Read "Installation and upgrade" section.) created by Jari Häkkinen
Job agents will be written later.
9:00 AM Ticket #515 (Add date of html pages generation to the first page) created by Jari Häkkinen
I think there should be date displayed on the first page of the …
7:49 AM Changeset [3196] by Nicklas Nordborg
Moved docbook images to figures directory.

Mar 16, 2007:

6:09 PM Ticket #513 (unable to view samples on "samples" page) closed by Nicklas Nordborg
duplicate: See #509
4:34 PM Ticket #512 (Feature request: switch user stays on same page if possible) updated by base
Replying to nicklas: > That was how it worked at first. …
1:32 PM Ticket #514 (Change permissions in Power User) updated by Nicklas Nordborg
What is the reason for the change? When the roles were specified the …
9:33 AM Ticket #514 (Change permissions in Power User) created by Johan Enell
I think that the permission to create Reporters should be removed from …
7:37 AM Ticket #513 (unable to view samples on "samples" page) created by base
There appears to be a problem with the "samples" page (on …

Mar 15, 2007:

5:41 PM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Nicklas Nordborg
Type changed
That was how it worked at first. Then we got into problems if the new …
4:49 PM Ticket #512 (Feature request: switch user stays on same page if possible) created by base
I don't know if this would be possible, or desirable in general, but …

Mar 14, 2007:

3:43 PM Ticket #511 (MGH Plugins from BASE2 not working) closed by Johan Enell
fixed: (In [3195]) Fixes #511
3:43 PM Changeset [3195] by Johan Enell
Fixes #511
3:11 PM Ticket #511 (MGH Plugins from BASE2 not working) updated by Johan Enell
Status, Milestone changed
11:32 AM Ticket #511 (MGH Plugins from BASE2 not working) created by base
I am trying to get the MGH plugins working under base2. I thought I …
1:43 AM Changeset [3194] by Jari Häkkinen
Merged log:trunk#3129:3193 into this branch.
12:20 AM Ticket #349 (Callback for events to plugins) updated by Jari Häkkinen
Milestone changed
12:20 AM Ticket #212 (Array slide import plugin) updated by Jari Häkkinen
Milestone changed
12:19 AM Ticket #23 (Apply button in popup windows?) updated by Jari Häkkinen
Milestone changed
12:18 AM Milestone BASE 2.2.2 completed
Bug fixes for the 2.2.1 release.
12:18 AM Changeset [3193] by Jari Häkkinen
Removed obsolete branch 2.2.2 superseded by source:/branches/2.2.3

Mar 13, 2007:

4:27 PM Changeset [3192] by Martin Svensson
Changed the DOCTYPE in each xml-file of documentation to use the local …
1:34 PM Changeset [3191] by Martin Svensson
Added a helptext element to the documentation-dtd to be used for …
11:05 AM Changeset [3190] by Johan Enell
Merged log:branches/2.2.2#3116:3186 to trunk.

Mar 12, 2007:

11:38 PM Ticket #510 (typos on Trac Developer Information) created by Peter Johansson
In paragraph entitled Test data, "We have an core developers..." …
10:00 PM DownloadPage edited by Jari Häkkinen
2.2.2 released. (diff)
9:55 PM Changeset [3189] by Jari Häkkinen
Bumped version number.
9:49 PM Changeset [3188] by Jari Häkkinen
New bug fix branch for 2.2
8:39 PM Changeset [3187] by Jari Häkkinen
Tagging version 2.2.2
8:38 PM Changeset [3186] by Jari Häkkinen
Bumped version number.
8:36 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) closed by Jari Häkkinen
duplicate: This is not a problem in BASE but rather in the hacked MeV. The issue …
8:12 PM Ticket #508 ('We' shouldn't be looking for file formats) closed by Jari Häkkinen
fixed: (In [3185]) Fixes #508.
8:12 PM Changeset [3185] by Jari Häkkinen
Fixes #508.
7:57 PM Ticket #508 ('We' shouldn't be looking for file formats) updated by Jari Häkkinen
Status, Owner changed
7:57 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) updated by Jari Häkkinen
Status changed
7:34 PM Changeset [3184] by Nicklas Nordborg
Added missing images for list pages
4:54 PM Changeset [3183] by Martin Svensson
More documentation about import and export data
4:48 PM Changeset [3182] by Johan Enell
4:01 PM Changeset [3181] by Nicklas Nordborg
Added some text about list pages
4:01 PM Changeset [3180] by Nicklas Nordborg
Added style to some gui elements. Changed to sans-serif body text.
11:11 AM Changeset [3179] by Martin Svensson
Docbook - chunked files now named after their ids.
9:54 AM Changeset [3178] by Johan Enell
added the section from the draft file
9:52 AM Ticket #509 (Adding new sample prevents other samples from being viewed) closed by Nicklas Nordborg
invalid: This is a problem with MySQL 5.0.27. See mailing list archive: …

Mar 9, 2007:

12:13 PM Ticket #509 (Adding new sample prevents other samples from being viewed) updated by base
Have just noticed we are using MySQL 5.0.27 with BASE 2.2.1, and that …
9:39 AM Ticket #509 (Adding new sample prevents other samples from being viewed) created by base
After creating a new Sample in BASE 2.2.1 I got the error Object …

Mar 8, 2007:

9:18 PM extended-properties.xml attached to Ticket #486 by base
Extended properties file edited by Jeremy Davis-Turak to include …
4:45 PM Changeset [3177] by Martin Svensson
Import data doc
2:24 PM Ticket #508 ('We' shouldn't be looking for file formats) updated by Martin Svensson
Description changed
11:27 AM Changeset [3176] by Johan Enell
added image
10:57 AM Changeset [3175] by Johan Enell
fixed linkes fixed some methodname tags
10:32 AM Changeset [3174] by Nicklas Nordborg
Fixed problem with building docbook in windows.
10:02 AM Ticket #508 ('We' shouldn't be looking for file formats) created by Martin Svensson
The message when no file format were found look like this: 'We …
9:01 AM Changeset [3173] by Martin Svensson
Added a job chapter in the documentation
8:51 AM Ticket #505 (where should be were) closed by Martin Svensson
fixed: (In [3172]) Fixes #505 where should be were
8:50 AM Changeset [3172] by Martin Svensson
Fixes #505 where should be were
8:38 AM Ticket #507 (Path to icons in bioassayset list contains double slash) closed by Martin Svensson
fixed: (In [3171]) Fixes #507 Path to icons in bioassayset list contains …
8:38 AM Changeset [3171] by Martin Svensson
Fixes #507 Path to icons in bioassayset list contains double slash
8:05 AM Ticket #507 (Path to icons in bioassayset list contains double slash) updated by Martin Svensson
Status changed

Mar 7, 2007:

11:10 PM Illumina conversion.txt attached to Ticket #486 by base
R script to convert a multi-array Illumina .csv output file into …
8:22 PM Ticket #507 (Path to icons in bioassayset list contains double slash) created by Nicklas Nordborg
See the report on the mailing list: …
8:00 PM Ticket #506 (Tried to move a file a caused an error) closed by Nicklas Nordborg
invalid: The error message might be a bit cryptic but actually means that there …
6:15 PM Changeset [3170] by Johan Enell
jsp section added and some examples removed
3:18 PM Changeset [3169] by Johan Enell
checked with aspell
2:31 PM Ticket #506 (Tried to move a file a caused an error) created by base
Tried to move a file from Administrator's hom account to template/raw …
12:46 PM Changeset [3168] by Johan Enell
text for InteractivePlugin.getRequestInformation added

Mar 6, 2007:

5:37 PM Changeset [3167] by Johan Enell
5:32 PM Changeset [3166] by Johan Enell
added text to section interfaces/plugin
4:48 PM Changeset [3165] by Martin Svensson
Introduction to import and export data - documentation
4:04 PM Changeset [3164] by Martin Svensson
The first section in a chapter is now placed in a seperated file when …
1:32 PM Changeset [3163] by Martin Svensson
First text written
11:25 AM Changeset [3162] by Martin Svensson
Added copyright text to userdoc/index.xml and some more changes to TOC …
8:45 AM Changeset [3161] by Martin Svensson
Added "id" attribute to each part and chapter in the docbook book. …

Mar 5, 2007:

4:47 PM Changeset [3160] by Martin Svensson
Added the files for developer documentation and set the parser to …
4:24 PM Changeset [3159] by Martin Svensson
Changed the way the "chapter" files are included in the documentation …
3:09 PM Changeset [3158] by Martin Svensson
Created files for admin documentation
2:43 PM Changeset [3157] by Martin Svensson
Created files for user- and overview documentation
2:12 PM Ticket #505 (where should be were) updated by Nicklas Nordborg
Owner, Milestone, Description changed
Should be simple to fix. Search all list_*.jsp pages and replace.
1:47 PM Changeset [3156] by Nicklas Nordborg
Added info about how to build the docbook documentation. Clean up …
1:38 PM Changeset [3155] by Nicklas Nordborg
Ignore generated docbook documentation
1:35 PM Changeset [3154] by Martin Svensson
A couple of more new lines to the contents of documentation
1:34 PM Changeset [3153] by Nicklas Nordborg
Added docbook DTD:s and stylesheets

Mar 1, 2007:

2:48 PM Ticket #505 (where should be were) created by Peter Johansson
'Where' is displayed when 'were' is expected For example * No …

Feb 26, 2007:

12:22 PM Changeset [3152] by Nicklas Nordborg
Fixes #499: Add Hql.entity(BasicData) method
12:22 PM Ticket #499 (Add Hql.entity(BasicData) method) closed by Nicklas Nordborg
fixed: (In [3152]) Fixes #499: Add Hql.entity(BasicData) method
12:14 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by Nicklas Nordborg
Milestone, Status changed
12:10 PM Changeset [3151] by Nicklas Nordborg
Added line about API changes and backwards compatibility
11:45 AM Ticket #501 (Make members of a project readable by all other members) closed by Nicklas Nordborg
fixed: (In [3150]) Fixes #501: Make members of a project readable by all …
11:44 AM Changeset [3150] by Nicklas Nordborg
Fixes #501: Make members of a project readable by all other members
10:49 AM Ticket #501 (Make members of a project readable by all other members) updated by Nicklas Nordborg
Status changed
10:48 AM Changeset [3149] by Nicklas Nordborg
Fixes #502: Experiment Overview warns about missing 'Required by …
10:48 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) closed by Nicklas Nordborg
fixed: (In [3149]) Fixes #502: Experiment Overview warns about missing …
10:47 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Status, Summary changed

Feb 25, 2007:

6:12 PM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Description changed
6:11 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Description changed
11:34 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) created by Nicklas Nordborg
Also, display information about which item the annotation is inherited …
11:32 AM Ticket #503 (Display more info about items in Experiment overview) created by Nicklas Nordborg
When you click on an item in the tree on the left side the right side …
11:28 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Component, Milestone, Owner changed
I am not sure but the […] on line 1581 seems strange. It should …

Feb 24, 2007:

7:10 PM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) created by base
WindowsXP Apache 5.5.15 Base2.3.0 trunk -AnnotationType defined and …
6:40 PM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by base
Still on the Experiment Item View, Allow Editing of Experimental …

Feb 23, 2007:

8:45 PM Ticket #501 (Make members of a project readable by all other members) created by Nicklas Nordborg
To get READ permission for a USER item the logged in user must either …
8:42 PM Ticket #500 (Document the Include class) updated by Nicklas Nordborg
Owner, Component changed
8:42 PM Ticket #500 (Document the Include class) created by Nicklas Nordborg
As it is now it is not very useful. * There is no information about …
8:37 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by Nicklas Nordborg
Summary changed
8:36 PM Ticket #499 (Add Hql.entity(BasicData) method) created by Nicklas Nordborg
To complement the Hql.entity(BasicItem) method.
4:12 PM Changeset [3148] by Martin Svensson
Contents of documentation
8:14 AM Changeset [3147] by Martin Svensson
References #146. Added help texts for user.preferences
8:14 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3147]) References #146. Added help texts for user.preferences
5:54 AM Changeset [3146] by Martin Svensson
More added to the content of documentation

Feb 21, 2007:

3:37 PM Changeset [3145] by Martin Svensson
Added more to the content of documentation
3:24 PM Ticket #498 (Move Array batches on Array design view page) updated by Martin Svensson
Description changed
3:23 PM Ticket #498 (Move Array batches on Array design view page) created by Martin Svensson
Array batches tend to be very far down on a view page for an array …
11:05 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Nicklas Nordborg
Summary changed

Feb 20, 2007:

3:13 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) closed by Martin Svensson
fixed: (In [3144]) Fixes #484 Export plug-in is not shown in plug-ins list
3:13 PM Changeset [3144] by Martin Svensson
Fixes #484 Export plug-in is not shown in plug-ins list
3:11 PM Changeset [3143] by Nicklas Nordborg
Added draft for table of contents of documentation
2:44 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Johan Enell
Owner changed
Change the text to "Analyse" sounds like a good idea. This is web so I …
10:52 AM Changeset [3142] by Martin Svensson
Fixes #493 Trashcan display item owned by other users in some cases
10:52 AM Ticket #493 (Trashcan display item owned by other users in some cases) closed by Martin Svensson
fixed: (In [3142]) Fixes #493 Trashcan display item owned by other users in …
10:35 AM Changeset [3141] by Nicklas Nordborg
Bumped version to 2.2.2pre
9:12 AM Changeset [3140] by Nicklas Nordborg
Fixes #495: Pb when creating Hybs from Labeled Extracts View Page
9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) closed by Nicklas Nordborg
fixed: (In [3140]) Fixes #495: Pb when creating Hybs from Labeled Extracts …
9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) updated by Nicklas Nordborg
Owner, Status, Milestone changed
9:08 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) closed by Nicklas Nordborg
fixed: (In [3139]) Fixes #496: Minor Display Glitch on 'Annotation & …
9:08 AM Changeset [3139] by Nicklas Nordborg
Fixes #496: Minor Display Glitch on 'Annotation & Parameter' Tab on …
9:05 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) updated by Nicklas Nordborg
Owner, Priority, Status, Milestone changed
9:05 AM Ticket #493 (Trashcan display item owned by other users in some cases) updated by Martin Svensson
Status, Owner changed
8:34 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) closed by Nicklas Nordborg
fixed: (In [3138]) Fixes #497: Floating point numbers with leading zeroes in …
8:34 AM Changeset [3138] by Nicklas Nordborg
Fixes #497: Floating point numbers with leading zeroes in the decimal …
8:30 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by Nicklas Nordborg
Summary changed
8:29 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by Nicklas Nordborg
Owner, Milestone, Priority, Status changed

Feb 19, 2007:

1:55 PM Ticket #494 (Unexpected Error on JSP for Experiment Overview) closed by Martin Svensson
fixed: (In [3137]) Fixes #494 Unexpected Error on JSP for Experiment Overview
1:55 PM Changeset [3137] by Martin Svensson
Fixes #494 Unexpected Error on JSP for Experiment Overview
11:11 AM Ticket #466 (Remaining Quantity not display in extracts) closed by Martin Svensson
fixed: (In [3136]) Fixes #466 Remaining Quantity not displayed in extracts.
11:11 AM Changeset [3136] by Martin Svensson
Fixes #466 Remaining Quantity not displayed in extracts.
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