Timeline



Feb 12, 2007:

1:31 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) closed by Nicklas Nordborg
fixed: (In [3129]) Fixes #489: Build #0 is reported after upgrade to 2.2 and …
1:31 PM Changeset [3129] by Nicklas Nordborg
Fixes #489: Build #0 is reported after upgrade to 2.2 and 2.2.1 …
12:01 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) updated by Jari Häkkinen
Milestone changed
12:00 PM Ticket #490 (BASE demo server issue) updated by Jari Häkkinen
Milestone changed
11:59 AM Ticket #490 (BASE demo server issue) closed by Jari Häkkinen
fixed
11:59 AM Ticket #486 (Import raw data from the Illumina platform) updated by Jari Häkkinen
Milestone changed
11:58 AM Ticket #485 (A user's group membership is not listed.) updated by Jari Häkkinen
Milestone changed
11:57 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Jari Häkkinen
Milestone changed
11:56 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Jari Häkkinen
Milestone changed
Change the 'run plug-in' message in GUI to 'run analysis'.
11:54 AM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by Jari Häkkinen
Milestone changed
11:53 AM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) updated by Jari Häkkinen
Milestone changed
11:52 AM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by Jari Häkkinen
Milestone, Version changed
11:52 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Jari Häkkinen
Version, Milestone changed
11:51 AM Ticket #469 (Improve error handling of invalid values in import plugins) updated by Jari Häkkinen
Milestone changed
11:50 AM Ticket #456 (Mass edit) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) updated by Jari Häkkinen
Milestone changed
11:44 AM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by Jari Häkkinen
Milestone changed
11:44 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Jari Häkkinen
Milestone changed
11:41 AM Ticket #411 (Extending compressed file support and storage) updated by Jari Häkkinen
Milestone changed
11:37 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Jari Häkkinen
Milestone changed
11:36 AM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by Jari Häkkinen
Milestone changed
11:33 AM Ticket #358 (Better info from Migration tool) updated by Jari Häkkinen
Milestone changed
11:32 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by Jari Häkkinen
Milestone changed
11:32 AM Ticket #349 (Callback for events to plugins) closed by Jari Häkkinen
wontfix
11:31 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Milestone changed
11:31 AM Ticket #337 (Tab2Mage export plugin) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #333 (Administrator documentation) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #326 (Mass annotation plug-in) updated by Jari Häkkinen
Milestone changed
11:29 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Performance tuning for the whole application is also needed.
11:28 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Milestone changed
11:27 AM Ticket #252 (Make the trashcan smarter when deleting items) updated by Jari Häkkinen
Milestone changed
11:26 AM Ticket #212 (Array slide import plugin) closed by Jari Häkkinen
wontfix
11:23 AM Ticket #146 (Add help text to the web gui) updated by Jari Häkkinen
Milestone changed
11:22 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by Jari Häkkinen
Priority, Milestone changed
11:22 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) updated by Jari Häkkinen
Milestone changed
11:22 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) updated by Jari Häkkinen
Milestone changed
11:21 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by Jari Häkkinen
Priority changed
11:21 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) updated by Jari Häkkinen
Milestone, Priority changed
11:20 AM Ticket #23 (Apply button in popup windows?) closed by Jari Häkkinen
wontfix
11:17 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Milestone changed
11:16 AM Ticket #492 (Web services) created by Jari Häkkinen
The outline for the web services implementation: 1. We are going to …

Feb 9, 2007:

10:26 PM WikiStart edited by Jari Häkkinen
Replaced 2.0 with 2. Also removed ref to old demo server. (diff)
4:39 PM Changeset [3128] by Johan Enell
Added javadoc
12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) updated by Jari Häkkinen
Description changed
12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) created by Jari Häkkinen
which it should not do. The ExperimentalFactors tag is an internal …
1:57 AM Ticket #490 (BASE demo server issue) created by base
[…]

Feb 8, 2007:

4:04 PM Milestone BASE 2.2.1 completed
Bug fixes for the 2.2 release.
4:04 PM Changeset [3127] by Jari Häkkinen
Removed obsolete branch 2.2.1.
3:57 PM Changeset [3126] by Johan Enell
Merged log:branches/2.2.1#3119:3123 trunk.
2:39 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) created by Jari Häkkinen
2:35 PM DownloadPage edited by Jari Häkkinen
2.2.1 released. (diff)
2:28 PM Changeset [3125] by Jari Häkkinen
New bug six branch for 2.2
2:18 PM Changeset [3124] by Jari Häkkinen
Tagging version 2.2.1
2:17 PM Changeset [3123] by Jari Häkkinen
Bumped version to 2.2.1
2:04 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) closed by Jari Häkkinen
fixed: This issue is returned to the original ticket:466. The upgrade problem …
1:53 PM Ticket #466 (Remaining Quantity not display in extracts) reopened by Jari Häkkinen
Reopened since the previous upgrade failed.
12:11 PM Ticket #487 (Update script must check the schema version before trying to update) closed by Martin Svensson
fixed: (In [3122]) Fixes #487. Update script must check the schema version …
12:11 PM Changeset [3122] by Martin Svensson
Fixes #487. Update script must check the schema version before trying …
11:48 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Johan Enell
(In [3121]) References #488. Update schema version without validating …
11:47 AM Changeset [3121] by Johan Enell
References #488. Update schema version without validating the measured …
10:39 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Martin Svensson
(In [3120]) References #488. Update schema version without validating …
10:38 AM Changeset [3120] by Martin Svensson
References #488. Update schema version without validating the measured …
10:10 AM DownloadPage edited by Jari Häkkinen
(diff)
2:22 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
I upgraded a couple of more servers. I noticed that servers that …
1:57 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
Trying to run the update script once more on the same database gives …
1:53 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
Updating another server gives a similar stack trace as Chrises […]
1:42 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
I have successfully upgraded from 2.1.2 to 2.2. This is of course not …

Feb 7, 2007:

11:44 PM Ticket #487 (Update script must check the schema version before trying to update) updated by Nicklas Nordborg
I checked the code and the first place to check the schema version is …
11:24 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Nicklas Nordborg
Description changed
11:23 PM Ticket #487 (Update script must check the schema version before trying to update) updated by Nicklas Nordborg
Description changed
11:15 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Nicklas Nordborg
Summary changed
11:14 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) created by Nicklas Nordborg
Here is the stacktrace: […] For more info see the mailing list …
11:10 PM Ticket #487 (Update script must check the schema version before trying to update) created by Nicklas Nordborg
If the schema version is higher than expected the update script must …
12:45 PM DownloadPage edited by Jari Häkkinen
(diff)
12:45 PM DownloadPage edited by Jari Häkkinen
(diff)
12:36 PM Milestone BASE 2.2 completed
Doc, help, larger feature changes.
12:36 PM DownloadPage edited by Jari Häkkinen
Releasing v2.2 (diff)
12:21 PM Changeset [3119] by Jari Häkkinen
New bug fix branch for 2.2
12:18 PM Ticket #457 (Update install instructions for release 2.2) closed by Jari Häkkinen
fixed
12:17 PM Changeset [3118] by Jari Häkkinen
Tagging version 2.2
12:15 PM Changeset [3117] by Jari Häkkinen
Changed link to BASE (MeV) hacks site.
11:14 AM Changeset [3116] by Jari Häkkinen
Bumped version number to 2.2.0. Added Micha to contribution list.
9:57 AM Changeset [3115] by Jari Häkkinen
Added text on how to stop unintentional migration.
2:14 AM Changeset [3114] by Jari Häkkinen
Cleaning.
2:13 AM Changeset [3113] by Jari Häkkinen
Updated installation document.
2:13 AM Changeset [3112] by Jari Häkkinen
Removed MeV export of an unneeded reporter column.
12:51 AM Changeset [3111] by Jari Häkkinen
Added MeV to the list of 3rd party components and to the tools list.

Feb 6, 2007:

4:18 PM Ticket #10 (Analysis: Hierarchical clustering) closed by Jari Häkkinen
fixed: Hierarchical clustering is now supported through MeV …
4:17 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) closed by Jari Häkkinen
fixed: MeV is now integrated as a Java Web Start application. It requires …
3:59 PM Ticket #464 (Permission denied when creting AnyToAny) closed by Jari Häkkinen
fixed
3:55 PM Changeset [3110] by Jari Häkkinen
Addresses #10 and #352. Unique temporary filenames used at client side.
3:55 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3110]) Addresses #10 and #352. Unique temporary filenames used at …
3:54 PM Changeset [3109] by Jari Häkkinen
Blank experimental factor labels are propagated properly in MeV export.
3:28 PM Changeset [3108] by Johan Enell
BASE1PluginExecuter uses BioAssaySetExporter to create basefile
3:26 PM Ticket #439 (Base file export) closed by Johan Enell
fixed: (In [3107]) Fixes #439
3:26 PM Changeset [3107] by Johan Enell
Fixes #439
3:11 PM Changeset [3106] by Jari Häkkinen
Addresses #10 and #352. Removed hard coded indexes for datamatrix …
3:11 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3106]) Addresses #10 and #352. Removed hard coded indexes for …
3:09 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3105]) Addresses #10 and #352. MeV uses system tmp directory …
3:09 PM Changeset [3105] by Jari Häkkinen
Addresses #10 and #352. MeV uses system tmp directory system properties.
11:03 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3104]) References #146. Added help texts for view user
11:03 AM Changeset [3104] by Martin Svensson
References #146. Added help texts for view user
11:00 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3103]) References #146. Modified the function of the toolbar that …
11:00 AM Changeset [3103] by Martin Svensson
References #146. Modified the function of the toolbar that is used to …
10:14 AM Ticket #486 (Import raw data from the Illumina platform) created by Nicklas Nordborg
A discussion about importing raw data from the Illumina platform was …

Feb 5, 2007:

11:02 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3102]) Addresses #10 and #352. MeV jsp uses Servlet API to …
11:02 PM Changeset [3102] by Jari Häkkinen
Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server …
9:02 PM Ticket #365 (Use java web start to launch plug-ins) closed by Jari Häkkinen
fixed: Mulit experiment viewer, http://www.tm4.org, is started with web …
8:55 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) closed by Jari Häkkinen
fixed: Increasing the MaxPermSize solves the problem. Our server is still …
8:53 PM Ticket #471 (Filenames with () are not treated well by trac) closed by Jari Häkkinen
fixed: Fixed in changeset:3066
4:43 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3101]) Addresses #10 and #352. Fixed problem with non-appearing …
4:43 PM Changeset [3101] by Jari Häkkinen
Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.
3:36 PM Ticket #485 (A user's group membership is not listed.) updated by Martin Svensson
Priority, Owner, Component changed
This only seems to appear with the group/users created with 'test roles'
3:18 PM Ticket #485 (A user's group membership is not listed.) created by Martin Svensson
You have a group, lets say Group A, where some users have been added …
12:19 PM Changeset [3100] by Jari Häkkinen
Addresses #10 and #352. Now actually using the bioassayset used to …
12:19 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3100]) Addresses #10 and #352. Now actually using the bioassayset …
12:03 PM Changeset [3099] by Jari Häkkinen
Moved max heap size tag to correct tag.
11:52 AM Ticket #10 (Analysis: Hierarchical clustering) updated by Nicklas Nordborg
(In [3098]) References #10: Hierarchical clustering Added servlet for …
11:52 AM Changeset [3098] by Nicklas Nordborg
References #10: Hierarchical clustering Added servlet for downloading …
11:49 AM Changeset [3097] by Nicklas Nordborg
Fixed permission check problem that caused a query to return items the …
11:37 AM Tickets #10,​352,​365 batch updated by Jari Häkkinen
(In [3096]) Addresses #10, #352, #365. First checkin for JWS use to …
11:37 AM Changeset [3096] by Jari Häkkinen
Addresses #10, #352, #365. First checkin for JWS use to launch MeV.
10:58 AM Changeset [3095] by Martin Svensson
Fixed so the list page of plate mappings not are corrupt when user …
9:31 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Milestone changed
9:31 AM Ticket #337 (Tab2Mage export plugin) updated by Jari Häkkinen
Milestone changed
9:30 AM Ticket #333 (Administrator documentation) updated by Jari Häkkinen
Milestone changed
9:30 AM Ticket #146 (Add help text to the web gui) updated by Jari Häkkinen
Milestone changed
8:09 AM Changeset [3094] by Nicklas Nordborg
Fixes #483: Add a direct start icon for export of bioassaysets in …
8:09 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) closed by Nicklas Nordborg
fixed: (In [3094]) Fixes #483: Add a direct start icon for export of …
7:52 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Nicklas Nordborg
Priority, Type changed
Export plugins are shown when you click the "Export" button. Analysis …
7:49 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) updated by Nicklas Nordborg
Status, Milestone, Owner, Priority changed
7:43 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) updated by Nicklas Nordborg
Type, Description, Summary changed
Split this ticket into two. See #484
7:42 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) created by Nicklas Nordborg
The export plug-in does not show up in the plug-in list for running …

Feb 2, 2007:

11:39 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) created by Jari Häkkinen
As it is now the user has to select a specific bioassayset to get a …

Feb 1, 2007:

4:41 PM Changeset [3093] by Martin Svensson
References #146. Added group.edit... helptexts and began at role.edit…
4:41 PM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3093]) References #146. Added group.edit... helptexts and began …

Jan 31, 2007:

10:30 PM Ticket #482 (Check that reporters really exists before using them ....) closed by Nicklas Nordborg
duplicate: Duplicate of #435
8:32 PM Ticket #482 (Check that reporters really exists before using them ....) created by Jari Häkkinen
With Affymetrix it is possible to create an array design and associate …
8:27 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) created by Jari Häkkinen
As it is now number of new and updated reporters are reporter. For …
8:12 PM Changeset [3092] by Jari Häkkinen
Added another affymetrix reporter importer configuration.
7:55 PM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) created by Nicklas Nordborg
Empty column names are, for example, passed through and later an error …
3:15 PM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3091]) References #146 Added helptexts for editing user. Set …
3:15 PM Changeset [3091] by Martin Svensson
References #146 Added helptexts for editing user. Set svn:eol-style on …

Jan 30, 2007:

10:26 AM Ticket #440 (Update to latest versions of 3rd-party software) updated by Nicklas Nordborg
(In [3090]) References #440: Update to latest versions of 3rd-party …
10:26 AM Changeset [3090] by Nicklas Nordborg
References #440: Update to latest versions of 3rd-party software …

Jan 29, 2007:

4:13 PM Changeset [3089] by Martin Svensson
BASE now throws right exception when trying to save a new user with a …
2:52 PM Changeset [3088] by Martin Svensson
Marked the password field to be required when editing a new user.
2:45 PM Changeset [3087] by Nicklas Nordborg
Make sure DbControl is closed
2:45 PM Changeset [3086] by Nicklas Nordborg
Fixes #466: Remaining Quantity not display in extracts
2:45 PM Ticket #466 (Remaining Quantity not display in extracts) closed by Nicklas Nordborg
fixed: (In [3086]) Fixes #466: Remaining Quantity not display in extracts
1:29 PM RobotsTxt created by Jari Häkkinen
Adding web indexing robot repellent.
1:28 PM DeveloperInformation edited by Jari Häkkinen
Adding web indexing robot repellent. (diff)
11:32 AM Ticket #464 (Permission denied when creting AnyToAny) updated by Nicklas Nordborg
Status changed
10:46 AM Ticket #479 (BioAssaySetExport should allow immediate download.) created by Jari Häkkinen
This relates to the fixed ticket:189. Read the last comment, …
10:42 AM Ticket #440 (Update to latest versions of 3rd-party software) closed by Nicklas Nordborg
fixed: (In [3085]) Fixes #440: Update to latest versions of 3rd-party software
10:42 AM Changeset [3085] by Nicklas Nordborg
Fixes #440: Update to latest versions of 3rd-party software
10:23 AM WikiStart edited by Jari Häkkinen
(diff)

Jan 26, 2007:

4:07 PM Changeset [3084] by Martin Svensson
Added a help text for column configuration

Jan 25, 2007:

8:57 AM Changeset [3083] by Martin Svensson
Correct a parameter in genepix-dyeswap configuration for the …

Jan 24, 2007:

9:10 AM Changeset [3082] by Martin Svensson
Fixes #478 Plate Importer requests more permissions
9:10 AM Ticket #478 (Plate Importer requests more permissions) closed by Martin Svensson
fixed: (In [3082]) Fixes #478 Plate Importer requests more permissions
8:49 AM Ticket #478 (Plate Importer requests more permissions) updated by Martin Svensson
Status changed
8:49 AM Ticket #478 (Plate Importer requests more permissions) created by Martin Svensson
The Plate importer plugin requests read permission on plates but has …

Jan 23, 2007:

10:15 AM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) closed by Nicklas Nordborg
duplicate: Ok, then it is the same as #476. I am closing this as a duplicate.
9:52 AM Changeset [3081] by Martin Svensson
Remarks added for each configuration in the list.
12:50 AM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) updated by Jari Häkkinen
I realize that my original descriptions was not clear, and in some …

Jan 22, 2007:

4:40 PM Changeset [3080] by Martin Svensson
Gave the edit-toolbar a proper BASE2-look.
4:02 PM Changeset [3079] by Nicklas Nordborg
References #466: Remaining Quantity not display in extracts Fixed …
4:02 PM Ticket #466 (Remaining Quantity not display in extracts) updated by Nicklas Nordborg
(In [3079]) References #466: Remaining Quantity not display in …
3:49 PM Ticket #466 (Remaining Quantity not display in extracts) updated by Nicklas Nordborg
Milestone, Owner, Component, Status changed
The problem is that the remaining quantity is given a null value if no …
2:52 PM Ticket #474 (Creation of new plug-in definition throws an exception if jar is not ...) updated by Nicklas Nordborg
Milestone changed
I have made another change that also gets rid of the stacktrace. The …
2:51 PM Ticket #459 (Better error message if plugin jar can't be found) updated by Nicklas Nordborg
(In [3078]) References #459: Better error message if plugin jar can't …
2:51 PM Changeset [3078] by Nicklas Nordborg
References #459: Better error message if plugin jar can't be found …
2:15 PM Ticket #431 (Multiple tables from the Table taglib on the same HTML page interfere ...) closed by Nicklas Nordborg
fixed: (In [3077]) Fixes #431: Multiple tables from the Table taglib on the …
2:15 PM Changeset [3077] by Nicklas Nordborg
Fixes #431: Multiple tables from the Table taglib on the same HTML …
2:14 PM Ticket #431 (Multiple tables from the Table taglib on the same HTML page interfere ...) updated by Nicklas Nordborg
Status, Milestone changed
1:37 PM Ticket #340 (Experiment validation tool) closed by Nicklas Nordborg
fixed
1:36 PM Ticket #262 (Overview of an experiment) closed by Nicklas Nordborg
fixed
12:20 PM Changeset [3076] by Nicklas Nordborg
Added better log messages to find out where unclosed DbControl:s are …
12:02 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) closed by Nicklas Nordborg
fixed: (In [3075]) Fixes #475: Error running RMAExpress plug-in to create new …
12:02 PM Changeset [3075] by Nicklas Nordborg
Fixes #475: Error running RMAExpress plug-in to create new root bioassay.
11:21 AM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) updated by Nicklas Nordborg
This problem is not specific to Affymetrix. The same error will happen …
11:16 AM Ticket #476 ("Import" button is not shown even if the user has permission to use an ...) closed by Nicklas Nordborg
fixed: (In [3074]) Fixes #476: "Import" button is not shown even if the user …
11:16 AM Changeset [3074] by Nicklas Nordborg
Fixes #476: "Import" button is not shown even if the user has …
11:08 AM Ticket #476 ("Import" button is not shown even if the user has permission to use an ...) updated by Nicklas Nordborg
Priority, Status changed
There are two problems that together creates a strange behaviour: 1. …
10:57 AM Changeset [3073] by Nicklas Nordborg
Fixes #477: Creating a child item in the same transaction as the …
10:57 AM Ticket #477 (Creating a child item in the same transaction as the parent item gives ...) closed by Nicklas Nordborg
fixed: (In [3073]) Fixes #477: Creating a child item in the same transaction …
10:00 AM Ticket #477 (Creating a child item in the same transaction as the parent item gives ...) updated by Nicklas Nordborg
Status changed
9:54 AM Ticket #477 (Creating a child item in the same transaction as the parent item gives ...) created by Nicklas Nordborg
For example: […] Happens because the permission check in …

Jan 21, 2007:

10:23 PM Changeset [3072] by Nicklas Nordborg
Fixed another path problem when running server on Windows
10:15 PM Ticket #476 ("Import" button is not shown even if the user has permission to use an ...) created by Nicklas Nordborg
From a comment in ticket #473: Another problem related to …
10:12 PM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) updated by Nicklas Nordborg
Priority changed
The import works when I test it in the trunk version. Can you confirm …
10:03 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) updated by Jari Häkkinen
Since there is a need to change affy treatment. Is there a possibility …
8:32 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) updated by Nicklas Nordborg
Status changed
I think this happens because a query to count the number of mappings …
8:18 PM Ticket #474 (Creation of new plug-in definition throws an exception if jar is not ...) closed by Nicklas Nordborg
duplicate: Duplicate and fixed by ticket #459.
6:04 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) created by Jari Häkkinen
I get "Error: Table 'base2dynamic.d1rawparents' doesn't exist" when …
5:34 PM Ticket #474 (Creation of new plug-in definition throws an exception if jar is not ...) created by Jari Häkkinen
but this exception should be caught and a nicer output could returned …
2:40 PM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) updated by Jari Häkkinen
Another problem related to configuration imports I encountered was …

Jan 18, 2007:

11:27 PM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) created by Jari Häkkinen
Running BASE 2.1.2 won't allow other administators than the default …
11:23 PM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by Jari Häkkinen
Milestone changed
11:17 PM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by Jari Häkkinen
Milestone changed
9:34 PM Changeset [3071] by Jari Häkkinen
Removed obsolete branch.
8:07 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) updated by Nicklas Nordborg
The third options is a bit risky if the libraries you move to a shared …
3:13 PM Changeset [3070] by Jari Häkkinen
Added core plugins link to admin docs list.
3:04 PM Changeset [3069] by Jari Häkkinen
Added remark column and increased page width.
1:20 PM Changeset [3068] by Johan Enell
Merged log:branches/2.1.2#2991:3059 to trunk
12:22 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) updated by Jari Häkkinen
I am now running tomcat with CATALINA_OPTS="-server -Xmx500m …
12:08 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) updated by Jari Häkkinen
Description changed
I am currently looking into these items (found searching the web) for …
11:59 AM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) updated by Jari Häkkinen
Status changed
11:59 AM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) created by Jari Häkkinen
I get java.lang.OutOfMemoryError: PermGen space error when running …
11:31 AM Changeset [3067] by Jari Häkkinen
Remove CR characters from files and fixing svn:eol-style property.
11:25 AM Changeset [3066] by Jari Häkkinen
Removed parantheses in filenames. Trac cannot handle these in the …
11:23 AM Changeset [3065] by Jari Häkkinen
Added copyright statement.
11:01 AM Changeset [3064] by Jari Häkkinen
Added Affymetrix reporter (probeset) importer configuration.

Jan 15, 2007:

4:12 PM Changeset [3063] by Nicklas Nordborg
Now get info about CEL and CDF file for affymetrix experiments. …
2:39 PM Tickets #262,​340 batch updated by Nicklas Nordborg
(In [3062]) References #262 and #340: Added possibility to save preset …
2:39 PM Changeset [3062] by Nicklas Nordborg
References #262 and #340: Added possibility to save preset for …
10:48 AM Ticket #465 ('Encrypt password' checkbox should not be visible when external ...) closed by Nicklas Nordborg
fixed: (In [3061]) Fixes #465: 'Encrypt password' checkbox should not be …
10:48 AM Changeset [3061] by Nicklas Nordborg
Fixes #465: 'Encrypt password' checkbox should not be visible when …
10:09 AM Ticket #471 (Filenames with () are not treated well by trac) updated by Jari Häkkinen
Status changed
10:09 AM Ticket #471 (Filenames with () are not treated well by trac) created by Jari Häkkinen
There are som doc related files linked from …
9:57 AM Ticket #466 (Remaining Quantity not display in extracts) updated by Nicklas Nordborg
Milestone, Priority changed

Jan 14, 2007:

9:35 PM WikiStart edited by Jari Häkkinen
Added link to core plug-ins list. (diff)
9:00 PM DownloadPage edited by Jari Häkkinen
2.1.2 released (diff)
8:41 PM Changeset [3060] by Jari Häkkinen
Tagging version 2.1.2
8:35 PM Changeset [3059] by Jari Häkkinen
Bumped version number.
8:32 PM Milestone BASE 2.1.2 completed
Issues assigned to this milestone will be fixed ASAP.
8:32 PM Ticket #454 (File upload times out) closed by Jari Häkkinen
fixed: The fix is now working on my slow connection test machines.
7:49 PM Ticket #451 (Zipped download) updated by Jari Häkkinen
I'd like to see support for the formats that are supported by the zip …
7:47 PM Ticket #470 (Improve batch upload to support tar:ed files) created by Jari Häkkinen
The support should include tar files that has been gzipped or bzipped.
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