Timeline



Dec 28, 2006:

12:44 AM Ticket #460 (Incompatible conditional operand types String and int) closed by Jari Häkkinen
duplicate: Duplicate of #463.
12:44 AM Ticket #461 (Incompatible conditional operand types String and int) closed by Jari Häkkinen
duplicate: Duplicate of #463.
12:43 AM Ticket #462 (Incompatible conditional operand types String and int) closed by Jari Häkkinen
duplicate: Duplicate of #463.

Dec 27, 2006:

2:40 PM Ticket #463 (Incompatible conditional operand types String and int) created by base
Hello, I'm get the following error while trying to add annotation …
2:40 PM Ticket #462 (Incompatible conditional operand types String and int) created by base
Hello, I'm get the following error while trying to add annotation …
2:40 PM Ticket #461 (Incompatible conditional operand types String and int) created by base
Hello, I'm get the following error while trying to add annotation …
2:35 PM Ticket #460 (Incompatible conditional operand types String and int) created by base
Hello , While trying to add annotation types to an experiment that i …

Dec 20, 2006:

5:37 PM Changeset [3046] by Martin Svensson
References #146 Added one more edit tool for links
3:37 PM Changeset [3045] by Nicklas Nordborg
References #262 and #340. The overview and validation is now complete. …
1:52 PM Changeset [3044] by Nicklas Nordborg
Return each inherited annotation only once
8:26 AM Ticket #459 (Better error message if plugin jar can't be found) created by Nicklas Nordborg
The stacktrace that is shown when a trying to install a plugin and the …

Dec 19, 2006:

6:54 PM Changeset [3043] by dominic
4:18 PM Changeset [3042] by dominic
tab2mage export with the systen out messages revoved

Dec 18, 2006:

3:59 PM Changeset [3041] by Martin Svensson
Misspelt style name
3:53 PM Changeset [3040] by Martin Svensson
References #146 Finished with making the help-text writing more easy. …
9:58 AM Changeset [3039] by Nicklas Nordborg
Added web services for listing projects and experiments

Dec 15, 2006:

7:33 PM Changeset [3038] by dominic
7:25 PM Changeset [3037] by dominic
4:38 PM Changeset [3036] by Martin Svensson
Reference #146 Beginning of tools to make it more easy editing the …
4:37 PM Changeset [3035] by Johan Enell
References #439
3:37 PM Changeset [3034] by Nicklas Nordborg
Reverted last change since it appears that Eclipse messed with this …
3:30 PM Changeset [3033] by Nicklas Nordborg
References #262, #340: First prototype for experiment overview. Reads …

Dec 14, 2006:

3:49 PM Changeset [3032] by Johan Enell
The header regexp was mixed up between genepix cy3/cy5 and genepix cy5/cy3
12:33 PM Changeset [3031] by dominic
9:41 AM Changeset [3030] by Nicklas Nordborg
Fixed some problems with loading array slide and hybiridization in one …
9:23 AM Changeset [3029] by Nicklas Nordborg
References #412: Fix build.xml to make it more developer-friendly …
8:50 AM Changeset [3028] by Nicklas Nordborg
Fixed number parsing problems with int/long and double/float

Dec 13, 2006:

5:18 PM Ticket #458 (Edit session) closed by Nicklas Nordborg
wontfix: Sessions are read-only.
4:21 PM Ticket #458 (Edit session) created by Johan Enell
It could be useful for an admin to be able to edit a session. I've …

Dec 12, 2006:

3:12 PM Ticket #457 (Update install instructions for release 2.2) created by Jari Häkkinen
3:03 PM Changeset [3027] by Nicklas Nordborg
References #412: Fix build.xml to make it more developer-friendly …
2:33 PM Changeset [3026] by Jari Häkkinen
Changed src install instructions to use 'ant package.bin'
2:30 PM Changeset [3025] by Jari Häkkinen
Changed src install instructions to use 'ant package.bin'
1:54 PM Changeset [3024] by Nicklas Nordborg
References #262 and #340. Added draft specification
1:32 PM Changeset [3023] by Nicklas Nordborg
Fixes #311: Allow parsing of numbers with different locale settings
1:32 PM Ticket #311 (Allow parsing of numbers with different locale settings) closed by Nicklas Nordborg
fixed: (In [3023]) Fixes #311: Allow parsing of numbers with different locale …
10:57 AM Changeset [3022] by dominic
10:00 AM Changeset [3021] by Martin Svensson
Replaced 'Most recent' in the menu bar with an icon
9:37 AM Changeset [3020] by Nicklas Nordborg
Yet another stylesheet fix
9:36 AM Changeset [3019] by Nicklas Nordborg
More fixes to menu stylesheet
8:57 AM Changeset [3018] by Nicklas Nordborg
Fixed menubar height since the images didn't fit.

Dec 11, 2006:

5:06 PM Ticket #456 (Mass edit) created by Johan Enell
A function to apply the same changes on many items at once can be very …
4:59 PM Changeset [3017] by Martin Svensson
Added a 'refresh-page'- button to the menu bar.
12:39 PM Changeset [3016] by Nicklas Nordborg
Removed 'bin' from ignore properties and added 'testdata'
12:35 PM Ticket #405 (Highlight function in plot tool) closed by Nicklas Nordborg
fixed: (In [3015]) Fixes #405: Highlight function in plot tool
12:35 PM Changeset [3015] by Nicklas Nordborg
Fixes #405: Highlight function in plot tool
8:10 AM Changeset [3014] by Nicklas Nordborg
Fixed problem with aborting a file upload

Dec 8, 2006:

3:26 PM Ticket #98 ("Excluded" items are still included if a list is exported) closed by Martin Svensson
fixed: (In [3013]) Fixes #98 "Excluded" items are still included if a list is …
3:26 PM Changeset [3013] by Martin Svensson
Fixes #98 "Excluded" items are still included if a list is exported
2:32 PM Changeset [3012] by Martin Svensson
References #444.Added the check of existing path for this plugin too.
1:04 PM Ticket #444 (Plugins should check that they are allowed to create/overwrite files ...) closed by Martin Svensson
fixed: (In [3011]) Fixes #444 Plugins should check that they are allowed to …
1:04 PM Changeset [3011] by Martin Svensson
Fixes #444 Plugins should check that they are allowed to …
11:58 AM Changeset [3010] by Nicklas Nordborg
References #454: File upload times out Use Ajax for updating the …
10:47 AM Changeset [3009] by dominic

Dec 7, 2006:

3:34 PM Ticket #437 (build from source doesn't include misc/sql/*.sql) closed by Nicklas Nordborg
fixed: Fixed by ticket #412: Fix build.xml to make it more developer-friendly
2:52 PM Changeset [3008] by Nicklas Nordborg
References #454: File upload times out Changed the way progress …
2:50 PM Changeset [3007] by Nicklas Nordborg
Fixed bug in DbControl?.rollback() method when disconnected from the …
10:47 AM Changeset [3006] by Nicklas Nordborg
First go at a webservices framework.
9:25 AM Ticket #455 (Empty date field is not accepted at several places) closed by Martin Svensson
fixed: (In [3005]) Fixes #455 Empty date field is not accepted at several places.
9:25 AM Changeset [3005] by Martin Svensson
Fixes #455 Empty date field is not accepted at several places.

Dec 6, 2006:

4:34 PM Ticket #455 (Empty date field is not accepted at several places) created by Martin Svensson
Trying to save an item with no date specified(where date is not a …
4:06 PM Changeset [3004] by Martin Svensson
Fixes #374 Restoring a Bioassayset or Transformation restores all …
4:06 PM Ticket #374 (Restoring a Bioassayset or Transformation restores all child bioassay ...) closed by Martin Svensson
fixed: (In [3004]) Fixes #374 Restoring a Bioassayset or Transformation …
12:25 PM Changeset [3003] by Nicklas Nordborg
References #454: File upload times out Possible fix but have to be …

Dec 5, 2006:

12:44 PM Changeset [3002] by dominic
10:53 AM Changeset [3001] by Jari Häkkinen
Creating a new branch for web services development.
10:47 AM Changeset [3000] by Jari Häkkinen
Creating a new branch for tab2mage development.

Dec 4, 2006:

12:57 PM Ticket #453 (End date is not allowed to be empty) closed by Nicklas Nordborg
fixed: (In [2999]) Fixes #453: End date is not allowed to be empty
12:56 PM Changeset [2999] by Nicklas Nordborg
Fixes #453: End date is not allowed to be empty
11:35 AM Ticket #454 (File upload times out) created by Nicklas Nordborg
The file upload may randomly get a timeout exception: […] * It …
10:28 AM Changeset [2998] by Nicklas Nordborg
References #215: Incorrect use of DynamicSpotQuery?... Fixed problem …
10:11 AM Ticket #453 (End date is not allowed to be empty) created by Jari Häkkinen
BASE complains with a popup: Invalid data On page …
12:45 AM WikiStart edited by Jari Häkkinen
Changed demo server location (diff)
12:00 AM Ticket #452 (Add BASEfile to the list of supported formats for BioAssaySetExporter ...) created by Jari Häkkinen

Dec 1, 2006:

6:06 PM Milestone BASE 2.1.1 completed
Issues assigned to this milestone will be fixed ASAP.
6:05 PM Changeset [2997] by Jari Häkkinen
Removing obsolete branch.
6:04 PM DownloadPage edited by Jari Häkkinen
2.1.1 released. (diff)
4:15 PM Changeset [2996] by Jari Häkkinen
Deleting outdated branch.
4:11 PM Changeset [2995] by Jari Häkkinen
Bumped version to 2.1.2pre
3:41 PM Changeset [2994] by Nicklas Nordborg
Fixed bug when web.xml wansn't found in config/local
3:34 PM Ticket #215 (Incorrect use of DynamicSpotQuery in table view, plot function, filter ...) closed by Nicklas Nordborg
fixed: (In [2993]) Fixes #215: Incorrect use of DynamicSpotQuery? in table …
3:34 PM Changeset [2993] by Nicklas Nordborg
Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
3:00 PM Changeset [2992] by Johan Enell
Merged log:branches/2.1#2846:2990 trunk.
12:34 PM Changeset [2991] by Jari Häkkinen
New bug fix branch for 2.1
12:33 PM Changeset [2990] by Jari Häkkinen
Tagging version 2.1.1
12:32 PM Changeset [2989] by Jari Häkkinen
Set version to 2.1.1
11:53 AM Changeset [2988] by Johan Enell
Fixes #433
11:53 AM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) closed by Johan Enell
fixed: (In [2988]) Fixes #433
11:34 AM Ticket #429 (Add BASEfile export to the bioassayset exporter.) closed by Johan Enell
fixed: (In [2987]) Fixes #429 BioAssaySetExporter? can export a serial …
11:34 AM Changeset [2987] by Johan Enell
Fixes #429 BioAssaySetExporter? can export a serial basefile not merged …
11:30 AM Changeset [2986] by Johan Enell
Added jep function for spot position
11:27 AM Changeset [2985] by Johan Enell
Implements to methods to sort the enumeration on keys or values

Nov 30, 2006:

12:50 PM Changeset [2984] by Nicklas Nordborg
Use the default error handling when nothing else has been specified
12:13 PM Changeset [2983] by Nicklas Nordborg
Fixed incorrect generation of build.xml in source distribution
10:51 AM Changeset [2982] by Nicklas Nordborg
Fixed compilation error
10:50 AM Ticket #447 (Fix javadoc warnings) closed by Nicklas Nordborg
fixed: (In [2981]) Fixes #447: Fix javadoc warnings
10:50 AM Changeset [2981] by Nicklas Nordborg
Fixes #447: Fix javadoc warnings
9:58 AM Changeset [2980] by Johan Enell
addded nullcheck
8:37 AM Changeset [2979] by Nicklas Nordborg
Need to generate hibernate mappings for test programs
8:27 AM Changeset [2978] by Nicklas Nordborg
Added session="false" to all jsp pages so we no longer generate …

Nov 29, 2006:

2:51 PM Ticket #383 (Should more docs be shipped with the binary package?) closed by Nicklas Nordborg
fixed
2:50 PM Changeset [2977] by Nicklas Nordborg
Fixes #138: Write documentation: 5c) Authentication plug-ins
2:50 PM Ticket #138 (Write documentation: 5c) Authentication plug-ins) closed by Nicklas Nordborg
fixed: (In [2977]) Fixes #138: Write documentation: 5c) Authentication plug-ins
2:49 PM Changeset [2976] by Nicklas Nordborg
Fixed some spelling errors and added links to Javadoc
12:28 PM Ticket #451 (Zipped download) created by Nicklas Nordborg
Create a plugin that allows a user to select one or more …
12:14 PM Changeset [2975] by Nicklas Nordborg
Updated configuration files with correct column mappings.
12:11 PM Changeset [2974] by Nicklas Nordborg
Fixed issues with incorrect column mappings and swithced channels in …
10:24 AM Ticket #449 (Innherit BASE 1 sample annotations to BASE 2 RawBioAssays during migration) closed by Nicklas Nordborg
fixed: (In [2973]) Fixes #449: Innherit BASE 1 sample annotations to BASE 2 …
10:24 AM Changeset [2973] by Nicklas Nordborg
Fixes #449: Innherit BASE 1 sample annotations to BASE 2 RawBioAssays?
8:59 AM Changeset [2972] by Nicklas Nordborg
References #383 and #412. Include some files from the misc directory …
8:35 AM Ticket #440 (Update to latest versions of 3rd-party software) reopened by Nicklas Nordborg
It turns out that there is a connection leak in the c3p0 connection …
8:28 AM Changeset [2971] by Nicklas Nordborg
Added svn.ignore
8:24 AM Ticket #450 (Plugin for importing Imagene raw data) created by Nicklas Nordborg
Imagene raw data comes in two files. One for the cy3 channel and one …
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