Timeline
Nov 29, 2006:
- 2:51 PM Ticket #383 (Should more docs be shipped with the binary package?) closed by
- fixed
- 2:50 PM Changeset [2977] by
- Fixes #138: Write documentation: 5c) Authentication plug-ins
- 2:50 PM Ticket #138 (Write documentation: 5c) Authentication plug-ins) closed by
- fixed: (In [2977]) Fixes #138: Write documentation: 5c) Authentication plug-ins
- 2:49 PM Changeset [2976] by
- Fixed some spelling errors and added links to Javadoc
- 1:01 PM Ticket #326 (Mass annotation plug-in) updated by
-
Milestone changed
- 1:00 PM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by
-
Milestone changed
- 12:28 PM Ticket #451 (Zipped download) created by
- Create a plugin that allows a user to select one or more …
- 12:14 PM Changeset [2975] by
- Updated configuration files with correct column mappings.
- 12:11 PM Changeset [2974] by
- Fixed issues with incorrect column mappings and swithced channels in …
- 10:24 AM Ticket #449 (Innherit BASE 1 sample annotations to BASE 2 RawBioAssays during migration) closed by
- fixed: (In [2973]) Fixes #449: Innherit BASE 1 sample annotations to BASE 2 …
- 10:24 AM Changeset [2973] by
- Fixes #449: Innherit BASE 1 sample annotations to BASE 2 RawBioAssays …
- 9:02 AM Ticket #449 (Innherit BASE 1 sample annotations to BASE 2 RawBioAssays during migration) updated by
-
Status, Milestone changed
- 8:59 AM Tickets #383,412 batch updated by
- (In [2972]) References #383 and #412. Include some files from the misc …
- 8:59 AM Changeset [2972] by
- References #383 and #412. Include some files from the misc directory …
- 8:35 AM Ticket #440 (Update to latest versions of 3rd-party software) reopened by
- It turns out that there is a connection leak in the c3p0 connection …
- 8:28 AM Changeset [2971] by
- Added svn.ignore
- 8:24 AM Ticket #450 (Plugin for importing Imagene raw data) created by
- Imagene raw data comes in two files. One for the cy3 channel and one …
Nov 28, 2006:
- 3:27 PM Ticket #449 (Innherit BASE 1 sample annotations to BASE 2 RawBioAssays during migration) created by
- The migration program should innherit the sample annotation from the …
- 3:04 PM Changeset [2970] by
- Fixes #440: Update to latest versions of 3rd-party software Verified …
- 3:04 PM Ticket #440 (Update to latest versions of 3rd-party software) closed by
- fixed: (In [2970]) Fixes #440: Update to latest versions of 3rd-party …
- 1:40 PM Changeset [2969] by
- Fixes #448: Setting 'Used quantity' for pooled sources of sample, …
- 1:40 PM Ticket #448 (Setting 'Used quantity' for pooled sources of sample, extracts and ...) closed by
- fixed: (In [2969]) Fixes #448: Setting 'Used quantity' for pooled sources of …
- 12:49 PM Ticket #448 (Setting 'Used quantity' for pooled sources of sample, extracts and ...) created by
- No error message. The value entered is silently ignored. The problem …
- 12:41 PM Changeset [2968] by
- Removed unused file
- 12:40 PM Ticket #440 (Update to latest versions of 3rd-party software) updated by
- (In [2967]) References #440: Update to latest versions of 3rd-party …
- 12:40 PM Changeset [2967] by
- References #440: Update to latest versions of 3rd-party software …
- 11:00 AM Ticket #440 (Update to latest versions of 3rd-party software) updated by
- (In [2966]) References #440: Update to latest versions of 3rd-party …
- 11:00 AM Changeset [2966] by
- References #440: Update to latest versions of 3rd-party software …
- 8:50 AM Ticket #383 (Should more docs be shipped with the binary package?) updated by
-
Owner, Status changed
- 8:50 AM Ticket #440 (Update to latest versions of 3rd-party software) updated by
-
Status changed
- 8:45 AM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
- (In [2965]) References #412: Fix build.xml to make it more …
- 8:45 AM Changeset [2965] by
- References #412: Fix build.xml to make it more developer-friendly …
- 8:42 AM Ticket #447 (Fix javadoc warnings) created by
Nov 27, 2006:
- 3:44 PM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) closed by
- fixed: (In [2964]) Fixes #430. Finalized export ... fixed experimental factor …
- 3:44 PM Changeset [2964] by
- Fixes #430. Finalized export ... fixed experimental factor output. …
- 3:43 PM Changeset [2963] by
- Added link to BASE web site
- 3:02 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
- (In [2962]) References #412: Fix build.xml to make it more …
- 3:02 PM Changeset [2962] by
- References #412: Fix build.xml to make it more developer-friendly …
- 2:59 PM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) created by
- This would be very useful for sorting and checking of file age.
- 2:32 PM Ticket #429 (Add BASEfile export to the bioassayset exporter.) updated by
- (In [2961]) References #429
- 2:32 PM Changeset [2961] by
- References #429
- 1:40 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
- (In [2960]) References #412: Fix build.xml to make it more …
- 1:40 PM Changeset [2960] by
- References #412: Fix build.xml to make it more developer-friendly Get …
- 12:36 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
- (In [2959]) References #412: Fix build.xml to make it more …
- 12:36 PM Changeset [2959] by
- References #412: Fix build.xml to make it more developer-friendly
- 12:20 PM Changeset [2958] by
- Fixed permission problem when a plugin tries to access annotation values.
- 11:20 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) created by
- The plug-ins may have own permissions and these are used when the …
- 11:15 AM Ticket #444 (Plugins should check that they are allowed to create/overwrite files ...) created by
- before they are started (i.e., in the plug-in/job creation dialogue). …
- 8:11 AM Ticket #443 (raw bioassay data not linked to LIMS kills Feature.getWell in ...) closed by
- fixed: (In [2957]) Fixes #443: raw bioassay data not linked to LIMS kills …
- 8:11 AM Changeset [2957] by
- Fixes #443: raw bioassay data not linked to LIMS kills Feature.getWell …
Nov 26, 2006:
- 11:33 PM Changeset [2956] by
- Addresses #430. Most things fixed for export but experimental factors …
- 11:33 PM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) updated by
- (In [2956]) Addresses #430. Most things fixed for export but …
- 11:31 PM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) updated by
- An annotation file will not be created but the annotation information …
- 11:28 PM Ticket #443 (raw bioassay data not linked to LIMS kills Feature.getWell in ...) updated by
- A similar exception occurs when trying to list the features for an …
- 10:05 PM Changeset [2955] by
- Minor clarification for genepix reporter map imports.
- 9:38 PM Changeset [2954] by
- Improved Genepix information in the getting started doc.
Nov 25, 2006:
- 8:35 AM Changeset [2953] by
- Fixed null pointer exception for getting parameter values.
- 8:33 AM Changeset [2952] by
- Closing DbControl.
Nov 24, 2006:
- 10:03 PM Changeset [2951] by
- Moved overwrite of existing file check to job configuration dialogue.
- 9:51 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
- Some of these things have been fixed in the 2.1.1 branch. There is a …
- 9:45 PM Changeset [2950] by
- Fixed typo.
- 8:18 PM Ticket #443 (raw bioassay data not linked to LIMS kills Feature.getWell in ...) updated by
- Thanks for providing a fix. It is more or less identical to the …
- 8:16 PM Ticket #443 (raw bioassay data not linked to LIMS kills Feature.getWell in ...) updated by
-
Version, Status, Milestone changed
This was fixed in the trunk as part of ticket #189 (changeset … - 4:53 PM Ticket #334 (Project default items) closed by
- fixed: (In [2949]) Fixes #334 Project default items
- 4:53 PM Changeset [2949] by
- Fixes #334 Project default items
- 3:41 PM Ticket #443 (raw bioassay data not linked to LIMS kills Feature.getWell in ...) created by
- I have migrated data sucessfully from BASE 1.2.x where we did not use …
Nov 23, 2006:
- 8:36 PM Changeset [2948] by
- Fixed typos.
- 7:47 PM Ticket #52 (Auto refresh job view when job not done) closed by
- worksforme
- 6:04 PM Changeset [2947] by
- References #334 Default settings are listed on project's view page
- 6:04 PM Ticket #334 (Project default items) updated by
- (In [2947]) References #334 Default settings are listed on project's …
- 5:38 PM Ticket #52 (Auto refresh job view when job not done) updated by
- By the way, the BASE 2 interface is really really sweet!
- 5:17 PM Ticket #52 (Auto refresh job view when job not done) updated by
- Actually it is doing something every 10 seconds, but the progress bars …
- 5:14 PM Ticket #52 (Auto refresh job view when job not done) reopened by
- The View->Jobs page does not refresh however. I'm also missing a …
- 2:41 PM Changeset [2946] by
- Fixes #442. Description for plugin parameters are now …
- 2:41 PM Ticket #442 (Plugin configuration exporter doesn't export parameter description) closed by
- fixed: (In [2946]) Fixes #442. Description for plugin parameters are now …
- 12:27 PM Changeset [2945] by
- Possible fix for BASE 1 disconnection issues
- 11:09 AM Ticket #441 (Plugin configuration importer import only half of the configuration) closed by
- fixed: (In [2944]) Fixes #441. The maxLength of an imported …
- 11:09 AM Changeset [2944] by
- Fixes #441. The maxLength of an imported StringParameterType is now …
- 9:39 AM Ticket #317 (Display and enter dates in different formats) updated by
- (In [2943]) References #317: Display and enter dates in different …
- 9:39 AM Changeset [2943] by
- References #317: Display and enter dates in different formats Added …
- 9:11 AM Ticket #442 (Plugin configuration exporter doesn't export parameter description) created by
- And the importer sets it to the empty string. The parameter …
- 8:40 AM Ticket #441 (Plugin configuration importer import only half of the configuration) updated by
-
Status changed
- 8:32 AM Ticket #441 (Plugin configuration importer import only half of the configuration) created by
- Try importing the attached file containing plugin configurations. The …
Nov 22, 2006:
- 1:42 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
-
Status, Owner changed
- 1:34 PM Ticket #317 (Display and enter dates in different formats) closed by
- fixed: (In [2942]) Fixes #317: Display and enter dates in different formats
- 1:34 PM Changeset [2942] by
- Fixes #317: Display and enter dates in different formats
- 12:11 PM Ticket #334 (Project default items) updated by
- (In [2941]) References #334. All default values can now be set when …
- 12:11 PM Changeset [2941] by
- References #334. All default values can now be set when …
Nov 21, 2006:
- 5:59 PM Ticket #440 (Update to latest versions of 3rd-party software) created by
- Hibernate 3.2.1 contains a fix for the update bug affecting postgres. …
- 3:51 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) updated by
- (In [2940]) References #438
- 3:51 PM Changeset [2940] by
- References #438
- 3:46 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) closed by
- worksforme: I'll change it in the docs. We have used characterEncoding=utf8 …
- 1:42 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) updated by
- OK. So I read the info in doc/configure_unicode_support.txt and added …
Nov 20, 2006:
- 5:53 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) updated by
- fixed - thanks to your help - will post more details tomorrow - have …
- 4:23 PM Changeset [2939] by
- References #334. Set default values for some BasicItems in a project.
- 4:23 PM Ticket #334 (Project default items) updated by
- (In [2939]) References #334. Set default values for some BasicItems in …
- 1:18 PM Ticket #317 (Display and enter dates in different formats) updated by
-
Status changed
- 11:57 AM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) updated by
- Hi Nicklas, Thanks very much for looking - I'll also do some more …
- 11:24 AM Changeset [2938] by
- Added performance test program
- 8:33 AM Changeset [2937] by
- Fixed a windows bug with path separators
Nov 17, 2006:
- 4:07 PM Ticket #333 (Administrator documentation) updated by
- (In [2936]) References #333: Administrator documentation Added …
- 4:07 PM Changeset [2936] by
- References #333: Administrator documentation Added information about …
- 2:12 PM Changeset [2935] by
- Test program now sets USE permission to plugins since the default has …
- 1:35 PM Changeset [2934] by
- Updated UML diagrams of recent database changes (schema version 23 --> 26)
- 1:34 PM Ticket #172 (Add externalId property to annotation type) closed by
- fixed: (In [2933]) Fixes #172: Add externalId property to annotation type
- 1:34 PM Changeset [2933] by
- Fixes #172: Add externalId property to annotation type
- 1:10 PM Ticket #172 (Add externalId property to annotation type) updated by
-
Status, Owner changed
- 12:29 PM Ticket #140 (Write documentation: 5e) Secondary file storage) closed by
- fixed: (In [2932]) Fixes #140: Write documentation: 5e) Secondary file …
- 12:29 PM Changeset [2932] by
- Fixes #140: Write documentation: 5e) Secondary file storage Also …
- 11:23 AM Ticket #439 (Base file export) updated by
- (In [2931]) References #439 Added job configuration for basefile Added …
- 11:23 AM Changeset [2931] by
- References #439 Added job configuration for basefile Added method to …
- 11:18 AM Ticket #439 (Base file export) updated by
-
Status changed
- 11:18 AM Ticket #439 (Base file export) created by
- The basefile export should be removed from the Base1PluginExecuter and …
- 9:51 AM Ticket #140 (Write documentation: 5e) Secondary file storage) updated by
-
Status changed
- 9:42 AM Changeset [2930] by
- Fixed compile error
- 9:36 AM Ticket #298 (Add administrator page for viewing disk usage statistics) closed by
- fixed: (In [2929]) Fixes #298: Add administrator page for viewing disk usage …
- 9:36 AM Changeset [2929] by
- Fixes #298: Add administrator page for viewing disk usage statistics
Nov 16, 2006:
- 8:33 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) updated by
- I googled around for the error message: {{{MysqlDataTruncation: Data …
- 5:38 PM Ticket #334 (Project default items) updated by
- (In [2928]) References #334. Updated the functions in core. Not …
- 5:38 PM Changeset [2928] by
- References #334. Updated the functions in core. Not completely …
- 5:20 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) created by
- I've patched the migrate tools to handle a customized Reporter table, …
- 3:04 PM Ticket #437 (build from source doesn't include misc/sql/*.sql) created by
- For the first time builder-from-source, I think it would be useful to …
- 1:28 PM Ticket #298 (Add administrator page for viewing disk usage statistics) updated by
- (In [2927]) References #298: Add administrator page for viewing disk …
- 1:28 PM Changeset [2927] by
- References #298: Add administrator page for viewing disk usage …
- 12:47 PM Ticket #434 (Base1PluginExecuter option enhancements) updated by
- I realise this - all I wanted was the option to retain the temporary …
- 12:34 PM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) updated by
- Thanks for the explanation. I'm continually impressed by how rich and …
- 11:23 AM Changeset [2926] by
- Moved merge.txt info to developer docs.
Nov 15, 2006:
- 8:08 PM Changeset [2925] by
- Added svndigest:ignore property tom some items.
- 7:19 PM Changeset [2924] by
- Update to publishing a new release.
- 6:49 PM Changeset [2923] by
- Version info in Application,java is now pushed from build.xml using ant.
- 6:28 PM Changeset [2922] by
- Propagating build no for all compiles.
- 2:35 PM Ticket #298 (Add administrator page for viewing disk usage statistics) updated by
-
Status changed
- 2:35 PM Ticket #98 ("Excluded" items are still included if a list is exported) updated by
- There was a change some time ago that caused the last statement to no …
- 2:33 PM Ticket #347 (Give administrators access to other users trashcans) closed by
- wontfix: This is no longer needed since there are two workarounds: 1. The …
- 2:22 PM Ticket #348 (Take ownership of items) closed by
- fixed: (In [2921]) Fixes #348: Take ownership of items
- 2:22 PM Changeset [2921] by
- Fixes #348: Take ownership of items
- 2:09 PM Changeset [2920] by
- PlateFlatFileImporter needs access to PlateGeometries
- 1:28 PM Ticket #348 (Take ownership of items) updated by
- (In [2919]) References #348: Take ownership of items Implemented on …
- 1:28 PM Changeset [2919] by
- References #348: Take ownership of items Implemented on all pages in …
- 12:21 PM Ticket #348 (Take ownership of items) updated by
- (In [2918]) References #348: Take ownership of items Implemented on …
- 12:21 PM Changeset [2918] by
- References #348: Take ownership of items Implemented on all pages in …
- 11:28 AM Ticket #348 (Take ownership of items) updated by
- (In [2917]) References #348: Take ownership of items Implemented on …
- 11:28 AM Changeset [2917] by
- References #348: Take ownership of items Implemented on all …
- 11:07 AM Ticket #348 (Take ownership of items) updated by
- (In [2916]) References #348: Take ownership of items Framework is …
- 11:07 AM Changeset [2916] by
- References #348: Take ownership of items Framework is done. Used …
- 9:11 AM Ticket #348 (Take ownership of items) updated by
-
Status changed
- 9:02 AM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by
- The check would probably have to be done when creating the array …
- 8:38 AM Changeset [2915] by
- Download servlet now sets a MIME type by checking the registered file …
- 8:38 AM Changeset [2914] by
- Download servlet now sets a MIME type by checking the registered file …
- 8:37 AM Changeset [2913] by
- Internal subdirectory is now generated taking year, week, day in week …
- 8:00 AM Changeset [2912] by
- Fixed NullPointerException when sc == null
- 7:58 AM Ticket #436 (Create extension system for the web application) updated by
- Note! This plugin system has nothing to do with the existing …
- 7:58 AM Ticket #436 (Create extension system for the web application) created by
- Create an extension/plug-in system for the web application that makes …
- 1:07 AM Changeset [2911] by
- Fixes #418.
- 1:07 AM Ticket #418 (Propagate the build number to the source package.) closed by
- fixed: (In [2911]) Fixes #418.
Nov 14, 2006:
- 10:56 PM Changeset [2910] by
- References #418.
- 10:56 PM Ticket #418 (Propagate the build number to the source package.) updated by
- (In [2910]) References #418.
- 5:05 PM Changeset [2909] by
- References #418. Removed build number from generated tar files.
- 5:05 PM Ticket #418 (Propagate the build number to the source package.) updated by
- (In [2909]) References #418. Removed build number from generated tar files.
- 4:51 PM Ticket #418 (Propagate the build number to the source package.) updated by
- (In [2908]) References #418. Add creation of source distro. …
- 4:51 PM Changeset [2908] by
- References #418. Add creation of source distro. Propagating build …
- 4:48 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by
- Relates to ticket:435
- 4:48 PM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by
- Relates to ticket:372
- 4:47 PM Ticket #435 (A check for reporter information is needed when adding/using ...) created by
- Affymetrix data can be used up to the point when a plug-in …
- 3:49 PM Ticket #402 (Add shortcut button for 'current item', 'current experiment' and ...) closed by
- fixed: (In [2907]) Fixes #402: Add shortcut button for 'current item', …
- 3:49 PM Changeset [2907] by
- Fixes #402: Add shortcut button for 'current item', 'current …
- 3:39 PM Ticket #334 (Project default items) updated by
- (In [2906]) References #334 Methods to get and set default items for a …
- 3:39 PM Changeset [2906] by
- References #334 Methods to get and set default items for a project. …
- 1:55 PM Changeset [2905] by
- Added Metadata.getOwnableItems()
- 12:26 PM Ticket #402 (Add shortcut button for 'current item', 'current experiment' and ...) updated by
-
Status, Owner changed
- 12:24 PM Changeset [2904] by
- Create sub-directories based on the date for uploaded files to avoid …
- 12:24 PM Changeset [2903] by
- Fixed problems with non-existing input fields when replacing a file
- 11:00 AM Changeset [2902] by
- Fixes #345: List all items owned by a user
- 11:00 AM Ticket #345 (List all items owned by a user) closed by
- fixed: (In [2902]) Fixes #345: List all items owned by a user
- 10:54 AM Changeset [2901] by
- Catch PermissionDeniedException when deleting/restoring items
- 8:56 AM Changeset [2900] by
- Fixed checking of already existing login and external ID for users.
- 8:35 AM Ticket #345 (List all items owned by a user) updated by
-
Status changed
- 8:33 AM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) updated by
-
Summary changed
- 8:33 AM Ticket #434 (Base1PluginExecuter option enhancements) closed by
- wontfix: The Base1PluginExecuter already keeps the directory structure as …
- 8:10 AM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) updated by
- The file manager uses the MIME type set on the file. If no MIME type …
Nov 13, 2006:
- 11:56 PM Ticket #434 (Base1PluginExecuter option enhancements) created by
- (using BASE 2.1 (2847) on Solaris 10 / Tomcat 5.5.17 / JDK 1.5.0_08) …
- 11:36 PM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) created by
- (using BASE 2.1 (2847) on Solaris 10 / Tomcat 5.5.17 / JDK 1.5.0_08) …
- 4:07 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) closed by
- fixed: (In [2899]) Fixes #241: Files that have been used for parameters to a …
- 4:06 PM Changeset [2899] by
- Fixes #241: Files that have been used for parameters to a job can't be …
- 3:31 PM Ticket #346 (If an item is used, get information about the items that are using it) closed by
- fixed: (In [2898]) Fixes #346: If an item is used, get information about the …
- 3:31 PM Changeset [2898] by
- Fixes #346: If an item is used, get information about the items that …
- 1:29 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by
-
Status changed
- 11:56 AM Changeset [2897] by
- Create new DbControl for each array design
- 9:40 AM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) closed by
- fixed
- 8:38 AM Changeset [2896] by
- Bumped version number to 2.1.1
- 8:27 AM Ticket #432 (Migration fails if the input field with is invalid in Base 1) closed by
- fixed: (In [2895]) Fixes #432: Migration fails if the input field with is …
- 8:27 AM Changeset [2895] by
- Fixes #432: Migration fails if the input field with is invalid in Base 1
- 8:16 AM Ticket #432 (Migration fails if the input field with is invalid in Base 1) updated by
-
Status changed
- 8:13 AM Ticket #432 (Migration fails if the input field with is invalid in Base 1) created by
- […] A better approach would be to only set the width if it …
Nov 10, 2006:
- 6:03 PM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) updated by
- Replying to nicklas: The problem is most probably solved. …
- 2:12 PM Ticket #346 (If an item is used, get information about the items that are using it) updated by
- (In [2894]) References #346: If an item is used, get information about …
- 2:12 PM Changeset [2894] by
- References #346: If an item is used, get information about the items …
- 11:01 AM Ticket #346 (If an item is used, get information about the items that are using it) updated by
-
Status changed
- 10:59 AM Ticket #334 (Project default items) updated by
-
Owner, Status changed
- 10:35 AM Ticket #428 (HTML tags in annotation values are not escaped) closed by
- fixed: (In [2893]) Fixes #428 HTML tags in annotation values are not escaped.
- 10:35 AM Changeset [2893] by
- Fixes #428 HTML tags in annotation values are not escaped.
- 9:46 AM Ticket #403 (Make Bioassays and Bioassay sets annotatable) updated by
-
Component changed
- 9:45 AM Ticket #403 (Make Bioassays and Bioassay sets annotatable) closed by
- fixed: (In [2892]) Fixes #403: Make Bioassays and Bioassay sets annotatable
- 9:45 AM Changeset [2892] by
- Fixes #403: Make Bioassays and Bioassay sets annotatable
- 9:43 AM Changeset [2891] by
- Fixed NullPointerException when node is empty for entryIterator() method
- 9:42 AM Changeset [2890] by
- Missing filter columns now get an empty <td></td> to solve problem …
- 9:22 AM Ticket #431 (Multiple tables from the Table taglib on the same HTML page interfere ...) created by
- The most notable problem is that colum definitions are stored in a …
- 9:15 AM Changeset [2889] by
- Missing columns now get an empty <td></td> to solve problem with data …
Nov 9, 2006:
- 5:24 PM Changeset [2888] by
- 5:13 PM Changeset [2887] by
- 5:06 PM Changeset [2886] by
- 3:51 PM Ticket #428 (HTML tags in annotation values are not escaped) updated by
-
Status changed
- 3:41 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) closed by
- fixed: Things reported by FindBugs with high and normal priority have been …
- 2:46 PM Ticket #403 (Make Bioassays and Bioassay sets annotatable) updated by
-
Owner, Status changed
- 2:45 PM Changeset [2885] by
- Now also use protocol parameter icon in annotate form.
- 2:31 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2884]) References #397 Unused fields and exception handling.
- 2:31 PM Changeset [2884] by
- References #397 Unused fields and exception handling.
- 2:29 PM Changeset [2883] by
- Added icon for protocol parameters
- 1:50 PM Changeset [2882] by
- Fixes #423: Create multiple slides wizard doesn't allow more than 3 …
- 1:50 PM Ticket #423 (Create multiple slides wizard doesn't allow more than 3 characters in ...) closed by
- fixed: (In [2882]) Fixes #423: Create multiple slides wizard doesn't allow …
- 1:32 PM Changeset [2881] by
- Fixes #422: updateindexes.sh can't find the unique index on the …
- 1:32 PM Ticket #422 (updateindexes.sh can't find the unique index on the Feature table with ...) closed by
- fixed: (In [2881]) Fixes #422: updateindexes.sh can't find the unique index …
- 1:01 PM Ticket #428 (HTML tags in annotation values are not escaped) updated by
-
Milestone changed
Moved to milestone 2.2 since it interfers with changes that has been … - 12:29 PM Changeset [2880] by
- Fixes #427: Browser main title displays version 2.0 irrespective the …
- 12:29 PM Ticket #427 (Browser main title displays version 2.0 irrespective the true version ...) closed by
- fixed: (In [2880]) Fixes #427: Browser main title displays version 2.0 …
- 12:19 PM Changeset [2879] by
- Fixes #421: Select none when multiplicity is 0 (inifinite)
- 12:19 PM Ticket #421 (Select none when multiplicity is 0 (inifinite)) closed by
- fixed: (In [2879]) Fixes #421: Select none when multiplicity is 0 (inifinite)
- 12:11 PM Ticket #424 (Make encoding used by FlatFileParser a configurable option) closed by
- fixed: (In [2878]) Fixes #424: Make encoding used by FlatFileParser a …
- 12:11 PM Changeset [2878] by
- Fixes #424: Make encoding used by FlatFileParser a configurable option …
- 11:18 AM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) updated by
-
Status changed
- 11:18 AM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) created by
- 11:17 AM Ticket #429 (Add BASEfile export to the bioassayset exporter.) created by
- 9:55 AM Ticket #428 (HTML tags in annotation values are not escaped) updated by
- I seems that both the view page and list pages is affected by this. …
- 9:51 AM Ticket #428 (HTML tags in annotation values are not escaped) created by
- Keith Ching wrote: > it seems you can make a String annotation type …
- 9:48 AM Changeset [2877] by
- Fixed exception when list of enumeration values is empty.
Nov 8, 2006:
- 4:16 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2876]) References #397 Removed fields that are not used.
- 4:16 PM Changeset [2876] by
- References #397 Removed fields that are not used.
- 3:32 PM Ticket #424 (Make encoding used by FlatFileParser a configurable option) updated by
-
Status changed
- 3:27 PM Ticket #339 (Protocol parameters) closed by
- fixed: (In [2875]) Fixes #339: Protocol parameters
- 3:27 PM Changeset [2875] by
- Fixes #339: Protocol parameters
- 1:51 PM Ticket #427 (Browser main title displays version 2.0 irrespective the true version ...) created by
- 1:46 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2874]) References #397 Checks that the whole offset was skipped.
- 1:46 PM Changeset [2874] by
- References #397 Checks that the whole offset was skipped.
- 12:57 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) created by
- The Jobs list sometimes fill up very quickly, especially when …
- 10:52 AM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2873]) References #397 Dead local store.
- 10:52 AM Changeset [2873] by
- References #397 Dead local store.
- 8:29 AM Ticket #424 (Make encoding used by FlatFileParser a configurable option) updated by
-
Description changed
- 8:29 AM Ticket #425 (Store the character encoding for text files) created by
- When the FlatFileParser reads files it uses the system default …
- 8:26 AM Ticket #424 (Make encoding used by FlatFileParser a configurable option) created by
- When the FlatFileParser reads files it uses the system default …
Nov 7, 2006:
- 2:42 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2872]) References #397 'Dead local store' fixed
- 2:41 PM Changeset [2872] by
- References #397 'Dead local store' fixed
- 1:51 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2871]) References #397 Dead store to local variable
- 1:51 PM Changeset [2871] by
- References #397 Dead store to local variable
- 1:11 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2870]) References #397 Method may fail to close database resource
- 1:11 PM Changeset [2870] by
- References #397 Method may fail to close database resource
- 11:35 AM Changeset [2869] by
- More getting started information.
- 11:27 AM Ticket #189 (Allow export plugins to send download immediately to client) closed by
- fixed: (In [2868]) Fixes #189: Allow export plugins to send download …
- 11:27 AM Changeset [2868] by
- Fixes #189: Allow export plugins to send download immediately to …
- 9:41 AM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2867]) References #397 The index of the parameters in …
- 9:41 AM Changeset [2867] by
- References #397 The index of the parameters in PreparedStatement …
- 8:24 AM Ticket #423 (Create multiple slides wizard doesn't allow more than 3 characters in ...) created by
- There is no need to have any restriction on that. The restriction on …
Nov 6, 2006:
- 4:12 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
- (In [2866]) References #397 Null pointer dereference
- 4:12 PM Changeset [2866] by
- References #397 Null pointer dereference
- 9:34 AM Ticket #422 (updateindexes.sh can't find the unique index on the Feature table with ...) created by
- It seems to be a problem that Postgres reporters that the index …
- 8:27 AM Changeset [2865] by
- Fixed bug: Inconsistent synchronization of …
- 7:41 AM Changeset [2864] by
- Fixed bug: Non-transient/non-serializable instance field in …
- 7:38 AM Changeset [2863] by
- Fixed bug: Nullcheck of value previously dereferenced
- 7:37 AM Changeset [2862] by
- Fixed bug: Null value is guaranteed to be dereferenced
Nov 3, 2006:
- 3:25 PM Changeset [2861] by
- BASEfile can now be configured bun it cant execute
- 2:42 PM Ticket #421 (Select none when multiplicity is 0 (inifinite)) created by
- I have created a PluginParameter with multiplicity 0 and notNull false …
- 11:50 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
- (In [2860]) References #189: Allow export plugins to send download …
- 11:50 AM Changeset [2860] by
- References #189: Allow export plugins to send download immediately to …
- 10:39 AM Changeset [2859] by
- Added link to instructions for upgrading a Postgres database
- 10:37 AM Changeset [2858] by
- Added link to instructions for upgrading a Postgres database
- 8:37 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
- (In [2857]) References #189: Allow export plugins to send download …
- 8:37 AM Changeset [2857] by
- References #189: Allow export plugins to send download immediately to …
- 8:36 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
- (In [2856]) References #189: Allow export plugins to send download …
- 8:36 AM Changeset [2856] by
- References #189: Allow export plugins to send download immediately to …
Nov 2, 2006:
- 2:59 PM Ticket #420 (Clear errors after each request) closed by
- fixed: (In [2855]) Fixes #420: Clear errors after each request
- 2:59 PM Changeset [2855] by
- Fixes #420: Clear errors after each request
- 2:56 PM Ticket #420 (Clear errors after each request) updated by
-
Status changed
- 2:51 PM Ticket #189 (Allow export plugins to send download immediately to client) updated by
- (In [2854]) References #189: Allow export plugins to send download …
- 2:51 PM Changeset [2854] by
- References #189: Allow export plugins to send download immediately to …
- 2:26 PM Changeset [2853] by
- Remove unsafe filename characters from User.getLogin() when used to …
- 11:41 AM Ticket #420 (Clear errors after each request) created by
- When a job is configured using many requests the error list should be …
Nov 1, 2006:
- 1:42 PM Ticket #419 (allow bulk file upload directly into a separate directory) closed by
- worksforme: The first statement that the zip uploader only can unpack to the …
- 12:54 PM Ticket #419 (allow bulk file upload directly into a separate directory) created by
- Currently the zip/jar bulk file upload will deposit files in the …
- 11:34 AM Ticket #408 (Implement FTP server) updated by
- (last comment was by Bob)
- 11:34 AM Ticket #408 (Implement FTP server) updated by
- Just saw that there's a ZIP file unpacker plugin - so that would do …
- 10:39 AM Changeset [2852] by
- Fixes #378: Creation of configurations for plug-ins that do not need …
- 10:39 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) closed by
- fixed: (In [2852]) Fixes #378: Creation of configurations for plug-ins that …
- 10:36 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) updated by
-
Status changed
- 10:35 AM Changeset [2851] by
- References #398: Version information in the "About" button Added info …
- 10:35 AM Ticket #398 (Version information in the "About" button) updated by
- (In [2851]) References #398: Version information in the "About" button …
- 10:34 AM Ticket #398 (Version information in the "About" button) closed by
- fixed: (In [2850]) Fixes #398: Version information in the "About" button
- 10:34 AM Changeset [2850] by
- Fixes #398: Version information in the "About" button
- 9:08 AM Ticket #398 (Version information in the "About" button) updated by
-
Status changed
- 9:05 AM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
-
Status changed
- 9:05 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
-
Status changed
- 9:03 AM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
-
Owner changed
- 8:37 AM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) updated by
-
Priority changed
I really don't understand the description and it is possible that it … - 8:33 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
-
Priority changed
Changed priority since it may be a feature which makes it easier to … - 8:31 AM Ticket #383 (Should more docs be shipped with the binary package?) updated by
- If I do 'ant dist' the /doc/admin directory is included.
- 8:28 AM Ticket #347 (Give administrators access to other users trashcans) updated by
-
Priority changed
- 8:27 AM Ticket #398 (Version information in the "About" button) updated by
-
Milestone, Owner changed
- 8:26 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) updated by
-
Milestone changed
Oct 31, 2006:
- 11:03 PM Changeset [2849] by
- Fixed typos in plug-in descriptions.
- 5:10 PM Milestone BASE 2.1 completed
- This is the next release of BASE. We do not expect to release more …
- 4:56 PM Changeset [2848] by
- Updated information on how to publish a new release.
- 4:39 PM DownloadPage edited by
- Releasing v2.1 (diff)
- 4:19 PM Changeset [2847] by
- New bug fix branch for 2.1
- 4:18 PM Changeset [2846] by
- Tagging version 2.1
- 4:17 PM Changeset [2845] by
- Bumped version number in <description> tag.
- 4:14 PM Changeset [2844] by
- Removed stray paragraph.
- 4:12 PM Ticket #418 (Propagate the build number to the source package.) updated by
-
Status, Component changed
- 4:11 PM Ticket #418 (Propagate the build number to the source package.) created by
- Bob says: The build number in the dialogue box is "#0" in my build of …
- 4:05 PM Ticket #349 (Callback for events to plugins) updated by
-
Milestone changed
- 4:03 PM Ticket #293 (allow queuing of uploads) closed by
- duplicate: duplicate of #408
- 4:03 PM Ticket #278 (Trying to create a new plate.) updated by
-
Milestone changed
- 4:02 PM Ticket #278 (Trying to create a new plate.) closed by
- worksforme
- 3:57 PM Ticket #405 (Highlight function in plot tool) updated by
-
Milestone changed
- 3:54 PM Ticket #374 (Restoring a Bioassayset or Transformation restores all child bioassay ...) updated by
-
Milestone changed
- 3:49 PM Ticket #172 (Add externalId property to annotation type) updated by
-
Owner changed
- 3:47 PM Ticket #146 (Add help text to the web gui) updated by
-
Owner changed
- 3:47 PM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) updated by
-
Milestone changed
- 3:46 PM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) updated by
-
Milestone changed
- 3:45 PM Ticket #108 (Logging the change history of an item) updated by
-
Milestone changed
- 3:45 PM Ticket #98 ("Excluded" items are still included if a list is exported) updated by
-
Milestone, Owner changed
- 3:43 PM Ticket #412 (Fix build.xml to make it more developer-friendly) updated by
-
Milestone, Owner changed
- 3:42 PM Ticket #411 (Extending compressed file support and storage) updated by
-
Milestone changed
- 3:42 PM Ticket #408 (Implement FTP server) updated by
- We are waiting for proof of concept from the Proteios team, …
- 3:39 PM Ticket #383 (Should more docs be shipped with the binary package?) updated by
- Should 'tomcat_with_java_1.5.txt' be removed from repo?
- 3:36 PM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) updated by
-
Version, Owner, Milestone changed
- 3:33 PM Ticket #376 (Better system for checking which plugins that can be executed in a ...) updated by
-
Milestone changed
- 3:32 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by
-
Milestone, Summary changed
- 3:31 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by
-
Owner changed
- 3:30 PM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by
-
Owner changed
Depends on ticket:339 - 3:29 PM Ticket #365 (Use java web start to launch plug-ins) updated by
-
Status, Milestone, Owner changed
Relates to ticket:10 - 3:28 PM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by
-
Status changed
- 3:27 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
-
Status changed
Relates to ticket:10 - 3:26 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
-
Owner, Milestone changed
- 3:22 PM Ticket #298 (Add administrator page for viewing disk usage statistics) updated by
-
Owner, Priority changed
- 3:19 PM Ticket #215 (Incorrect use of DynamicSpotQuery in table view, plot function, filter ...) updated by
-
Milestone, Description changed
- 3:17 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) updated by
-
Milestone changed
- 3:13 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
- Clustering support will be added through TM4s MeV software. Currently …
- 3:12 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
-
Milestone, Version changed
- 2:31 PM Ticket #408 (Implement FTP server) updated by
- The FTP server would be very helpful for us too (Bob@VectorBase).
- 2:31 PM Changeset [2843] by
- Removed unused imports
- 2:30 PM Changeset [2842] by
- Import of plugin configurations is now displayed by progress reporter
- 2:20 PM Changeset [2841] by
- Fixed typo.
- 2:18 PM Changeset [2840] by
- Changed default sharing of plug-ins. Alphabetized plug-in list.
- 2:06 PM Changeset [2839] by
- Base1Executer throws an exception when average on gene is true. This …
- 2:02 PM Ticket #312 (ReporterType import) closed by
- fixed: (In [2838]) Fixes #312
- 2:02 PM Changeset [2838] by
- Fixes #312
- 12:29 PM Changeset [2837] by
- Exporting reporter ids. Made query code more robust for changes.
- 11:40 AM Ticket #410 (The inner class Base1PluginExecutor.PosRep should implement the ...) closed by
- fixed: (In [2836]) Fixes #410
- 11:40 AM Changeset [2836] by
- Fixes #410
- 11:28 AM Changeset [2835] by
- Removed comment header from MeV tab export. MeV does not support …
- 11:27 AM Ticket #409 (Possible NullPointerException in Base1PluginExecutor) updated by
- (In [2834]) Base1executer will teminate if it cant find any …
- 11:27 AM Changeset [2834] by
- Base1executer will teminate if it cant find any configfile. fixes #409
- 11:24 AM Changeset [2833] by
- Removed debug output.
- 11:18 AM Ticket #409 (Possible NullPointerException in Base1PluginExecutor) closed by
- fixed: (In [2832]) Fixes #409
- 11:18 AM Changeset [2832] by
- Fixes #409
- 11:18 AM Changeset [2831] by
- Plugin configuration exporter now uses Integer parameter type for …
- 11:13 AM Changeset [2830] by
- Fixed inconsistencies with bioassay set spot view and exported data. …
- 9:53 AM Changeset [2829] by
- Fixed incorrect permissions for plugin configuration exporter.
- 9:33 AM Ticket #336 (Install common file formats with main installation) closed by
- fixed: (In [2828]) Fixes #336 Install common file formats with main …
- 9:33 AM Changeset [2828] by
- Fixes #336 Install common file formats with main installation. Problem …
- 9:28 AM Changeset [2827] by
- Updated requested permissions for export plugins
- 9:12 AM Changeset [2826] by
- Fixed link to incorrect JavaScript function
- 8:54 AM Changeset [2825] by
- Added BioAssaySetExporter plugin to Install.java.
- 8:47 AM Changeset [2824] by
- Added BioAssaySetExporter class.
- 8:35 AM Ticket #350 (Switch to another user functionality) updated by
- (In [2823]) References #350: Switch to another user functionality …
- 8:35 AM Changeset [2823] by
- References #350: Switch to another user functionality Missed to add …
- 8:31 AM Ticket #417 (Verify that schema version of the database match the core API) closed by
- fixed: (In [2822]) Fixes #417: Verify that schema version of the database …
- 8:31 AM Changeset [2822] by
- Fixes #417: Verify that schema version of the database match the core API
- 8:13 AM Ticket #417 (Verify that schema version of the database match the core API) updated by
-
Milestone, Status changed
Oct 30, 2006:
- 7:09 PM Changeset [2821] by
- Added getVersionString utility function.
- 7:08 PM Changeset [2820] by
- Improved getting started doc.
- 6:25 PM Changeset [2819] by
- Fixed svn:keywords property.
- 2:58 PM Ticket #351 (External job server usage) closed by
- fixed
- 2:55 PM Ticket #350 (Switch to another user functionality) closed by
- fixed: (In [2818]) Fixes #350: Switch to another user functionality
- 2:55 PM Changeset [2818] by
- Fixes #350: Switch to another user functionality
- 2:54 PM Ticket #350 (Switch to another user functionality) updated by
-
Status, Milestone changed
- 2:54 PM Ticket #417 (Verify that schema version of the database match the core API) created by
- The core should verify that the database schema version matches what …
- 12:10 PM Ticket #416 (Only show plugin-buttons when the logged in user has access to at ...) closed by
- fixed: (In [2817]) Fixes #416: Only show plugin-buttons when the logged in …
- 12:10 PM Changeset [2817] by
- Fixes #416: Only show plugin-buttons when the logged in user has …
- 9:41 AM Ticket #416 (Only show plugin-buttons when the logged in user has access to at ...) updated by
-
Status changed
- 9:41 AM Ticket #416 (Only show plugin-buttons when the logged in user has access to at ...) created by
- The web interface displays plugin buttons (Import/Export/Run plugin) …
- 9:36 AM Changeset [2816] by
- Fixed issues with proxy initialisation from statless session.
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