Timeline



Nov 17, 2006:

4:07 PM Changeset [2936] by Nicklas Nordborg
References #333: Administrator documentation Added information about …
2:12 PM Changeset [2935] by Nicklas Nordborg
Test program now sets USE permission to plugins since the default has …
1:35 PM Changeset [2934] by Nicklas Nordborg
Updated UML diagrams of recent database changes (schema version 23 --> 26)
1:34 PM Ticket #172 (Add externalId property to annotation type) closed by Nicklas Nordborg
fixed: (In [2933]) Fixes #172: Add externalId property to annotation type
1:34 PM Changeset [2933] by Nicklas Nordborg
Fixes #172: Add externalId property to annotation type
12:29 PM Ticket #140 (Write documentation: 5e) Secondary file storage) closed by Nicklas Nordborg
fixed: (In [2932]) Fixes #140: Write documentation: 5e) Secondary file …
12:29 PM Changeset [2932] by Nicklas Nordborg
Fixes #140: Write documentation: 5e) Secondary file storage Also …
11:23 AM Changeset [2931] by Johan Enell
References #439 Added job configuration for basefile Added method to …
11:18 AM Ticket #439 (Base file export) created by Johan Enell
The basefile export should be removed from the Base1PluginExecuter and …
9:42 AM Changeset [2930] by Nicklas Nordborg
Fixed compile error
9:36 AM Ticket #298 (Add administrator page for viewing disk usage statistics) closed by Nicklas Nordborg
fixed: (In [2929]) Fixes #298: Add administrator page for viewing disk usage …
9:36 AM Changeset [2929] by Nicklas Nordborg
Fixes #298: Add administrator page for viewing disk usage statistics

Nov 16, 2006:

5:38 PM Changeset [2928] by Martin Svensson
References #334. Updated the functions in core. Not completely …
5:20 PM Ticket #438 (BASE 1 lowess plugin description too long for BASE 2 migrate tool) created by base
I've patched the migrate tools to handle a customized Reporter table, …
3:04 PM Ticket #437 (build from source doesn't include misc/sql/*.sql) created by base
For the first time builder-from-source, I think it would be useful to …
1:28 PM Changeset [2927] by Nicklas Nordborg
References #298: Add administrator page for viewing disk usage …
11:23 AM Changeset [2926] by Jari Häkkinen
Moved merge.txt info to developer docs.

Nov 15, 2006:

8:08 PM Changeset [2925] by Jari Häkkinen
Added svndigest:ignore property tom some items.
7:19 PM Changeset [2924] by Jari Häkkinen
Update to publishing a new release.
6:49 PM Changeset [2923] by Jari Häkkinen
Version info in Application,java is now pushed from build.xml using ant.
6:28 PM Changeset [2922] by Jari Häkkinen
Propagating build no for all compiles.
2:33 PM Ticket #347 (Give administrators access to other users trashcans) closed by Nicklas Nordborg
wontfix: This is no longer needed since there are two workarounds: 1. The …
2:22 PM Ticket #348 (Take ownership of items) closed by Nicklas Nordborg
fixed: (In [2921]) Fixes #348: Take ownership of items
2:22 PM Changeset [2921] by Nicklas Nordborg
Fixes #348: Take ownership of items
2:09 PM Changeset [2920] by Nicklas Nordborg
PlateFlatFileImporter? needs access to PlateGeometries?
1:28 PM Changeset [2919] by Nicklas Nordborg
References #348: Take ownership of items Implemented on all pages in …
12:21 PM Changeset [2918] by Nicklas Nordborg
References #348: Take ownership of items Implemented on all pages in …
11:28 AM Changeset [2917] by Nicklas Nordborg
References #348: Take ownership of items Implemented on all …
11:07 AM Changeset [2916] by Nicklas Nordborg
References #348: Take ownership of items Framework is done. Used …
8:38 AM Changeset [2915] by Nicklas Nordborg
Download servlet now sets a MIME type by checking the registered file …
8:38 AM Changeset [2914] by Nicklas Nordborg
Download servlet now sets a MIME type by checking the registered file …
8:37 AM Changeset [2913] by Nicklas Nordborg
Internal subdirectory is now generated taking year, week, day in week …
8:00 AM Changeset [2912] by Nicklas Nordborg
Fixed NullPointerException? when sc == null
7:58 AM Ticket #436 (Create extension system for the web application) created by Nicklas Nordborg
Create an extension/plug-in system for the web application that makes …
1:07 AM Changeset [2911] by Jari Häkkinen
Fixes #418.
1:07 AM Ticket #418 (Propagate the build number to the source package.) closed by Jari Häkkinen
fixed: (In [2911]) Fixes #418.

Nov 14, 2006:

10:56 PM Changeset [2910] by Jari Häkkinen
References #418.
5:05 PM Changeset [2909] by Jari Häkkinen
References #418. Removed build number from generated tar files.
4:51 PM Changeset [2908] by Jari Häkkinen
References #418. Add creation of source distro. Propagating build …
4:47 PM Ticket #435 (A check for reporter information is needed when adding/using ...) created by Jari Häkkinen
Affymetrix data can be used up to the point when a plug-in …
3:49 PM Ticket #402 (Add shortcut button for 'current item', 'current experiment' and ...) closed by Nicklas Nordborg
fixed: (In [2907]) Fixes #402: Add shortcut button for 'current item', …
3:49 PM Changeset [2907] by Nicklas Nordborg
Fixes #402: Add shortcut button for 'current item', 'current …
3:39 PM Changeset [2906] by Martin Svensson
References #334 Methods to get and set default items for a project. …
1:55 PM Changeset [2905] by Nicklas Nordborg
Added Metadata.getOwnableItems()
12:24 PM Changeset [2904] by Nicklas Nordborg
Create sub-directories based on the date for uploaded files to avoid …
12:24 PM Changeset [2903] by Nicklas Nordborg
Fixed problems with non-existing input fields when replacing a file
11:00 AM Changeset [2902] by Nicklas Nordborg
Fixes #345: List all items owned by a user
11:00 AM Ticket #345 (List all items owned by a user) closed by Nicklas Nordborg
fixed: (In [2902]) Fixes #345: List all items owned by a user
10:54 AM Changeset [2901] by Nicklas Nordborg
Catch PermissionDeniedException? when deleting/restoring items
8:56 AM Changeset [2900] by Nicklas Nordborg
Fixed checking of already existing login and external ID for users.
8:33 AM Ticket #434 (Base1PluginExecuter option enhancements) closed by Nicklas Nordborg
wontfix: The Base1PluginExecuter already keeps the directory structure as …

Nov 13, 2006:

11:56 PM Ticket #434 (Base1PluginExecuter option enhancements) created by base
(using BASE 2.1 (2847) on Solaris 10 / Tomcat 5.5.17 / JDK 1.5.0_08) …
11:36 PM Ticket #433 (Base1PluginExecutor doesn't set MIME type on files) created by base
(using BASE 2.1 (2847) on Solaris 10 / Tomcat 5.5.17 / JDK 1.5.0_08) …
4:07 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) closed by Nicklas Nordborg
fixed: (In [2899]) Fixes #241: Files that have been used for parameters to a …
4:06 PM Changeset [2899] by Nicklas Nordborg
Fixes #241: Files that have been used for parameters to a job can't be …
3:31 PM Ticket #346 (If an item is used, get information about the items that are using it) closed by Nicklas Nordborg
fixed: (In [2898]) Fixes #346: If an item is used, get information about the …
3:31 PM Changeset [2898] by Nicklas Nordborg
Fixes #346: If an item is used, get information about the items that …
11:56 AM Changeset [2897] by Nicklas Nordborg
Create new DbControl? for each array design
9:40 AM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) closed by Nicklas Nordborg
fixed
8:38 AM Changeset [2896] by Jari Häkkinen
Bumped version number to 2.1.1
8:27 AM Ticket #432 (Migration fails if the input field with is invalid in Base 1) closed by Nicklas Nordborg
fixed: (In [2895]) Fixes #432: Migration fails if the input field with is …
8:27 AM Changeset [2895] by Nicklas Nordborg
Fixes #432: Migration fails if the input field with is invalid in Base 1
8:13 AM Ticket #432 (Migration fails if the input field with is invalid in Base 1) created by Nicklas Nordborg
[…] A better approach would be to only set the width if it …

Nov 10, 2006:

2:12 PM Changeset [2894] by Nicklas Nordborg
References #346: If an item is used, get information about the items …
10:35 AM Ticket #428 (HTML tags in annotation values are not escaped) closed by Martin Svensson
fixed: (In [2893]) Fixes #428 HTML tags in annotation values are not escaped.
10:35 AM Changeset [2893] by Martin Svensson
Fixes #428 HTML tags in annotation values are not escaped.
9:45 AM Ticket #403 (Make Bioassays and Bioassay sets annotatable) closed by Nicklas Nordborg
fixed: (In [2892]) Fixes #403: Make Bioassays and Bioassay sets annotatable
9:45 AM Changeset [2892] by Nicklas Nordborg
Fixes #403: Make Bioassays and Bioassay sets annotatable
9:43 AM Changeset [2891] by Nicklas Nordborg
Fixed NullPointerException? when node is empty for entryIterator() method
9:42 AM Changeset [2890] by Nicklas Nordborg
Missing filter columns now get an empty <td></td> to solve problem …
9:22 AM Ticket #431 (Multiple tables from the Table taglib on the same HTML page interfere ...) created by Nicklas Nordborg
The most notable problem is that colum definitions are stored in a …
9:15 AM Changeset [2889] by Nicklas Nordborg
Missing columns now get an empty <td></td> to solve problem with data …

Nov 9, 2006:

5:24 PM Changeset [2888] by dominic
5:13 PM Changeset [2887] by dominic
5:06 PM Changeset [2886] by dominic
3:41 PM Ticket #397 (Use the FindBugs program to check the BASE 2 code) closed by Martin Svensson
fixed: Things reported by FindBugs? with high and normal priority have been …
2:45 PM Changeset [2885] by Nicklas Nordborg
Now also use protocol parameter icon in annotate form.
2:31 PM Changeset [2884] by Martin Svensson
References #397 Unused fields and exception handling.
2:29 PM Changeset [2883] by Nicklas Nordborg
Added icon for protocol parameters
1:50 PM Changeset [2882] by Nicklas Nordborg
Fixes #423: Create multiple slides wizard doesn't allow more than 3 …
1:50 PM Ticket #423 (Create multiple slides wizard doesn't allow more than 3 characters in ...) closed by Nicklas Nordborg
fixed: (In [2882]) Fixes #423: Create multiple slides wizard doesn't allow …
1:32 PM Changeset [2881] by Nicklas Nordborg
Fixes #422: updateindexes.sh can't find the unique index on the …
1:32 PM Ticket #422 (updateindexes.sh can't find the unique index on the Feature table with ...) closed by Nicklas Nordborg
fixed: (In [2881]) Fixes #422: updateindexes.sh can't find the unique index …
12:29 PM Changeset [2880] by Nicklas Nordborg
Fixes #427: Browser main title displays version 2.0 irrespective the …
12:29 PM Ticket #427 (Browser main title displays version 2.0 irrespective the true version ...) closed by Nicklas Nordborg
fixed: (In [2880]) Fixes #427: Browser main title displays version 2.0 …
12:19 PM Changeset [2879] by Nicklas Nordborg
Fixes #421: Select none when multiplicity is 0 (inifinite)
12:19 PM Ticket #421 (Select none when multiplicity is 0 (inifinite)) closed by Nicklas Nordborg
fixed: (In [2879]) Fixes #421: Select none when multiplicity is 0 (inifinite)
12:11 PM Ticket #424 (Make encoding used by FlatFileParser a configurable option) closed by Nicklas Nordborg
fixed: (In [2878]) Fixes #424: Make encoding used by FlatFileParser? a …
12:11 PM Changeset [2878] by Nicklas Nordborg
Fixes #424: Make encoding used by FlatFileParser? a configurable option …
11:18 AM Ticket #430 (The MeV bioassay set export should also generate an annotation file ...) created by Jari Häkkinen
11:17 AM Ticket #429 (Add BASEfile export to the bioassayset exporter.) created by Jari Häkkinen
9:51 AM Ticket #428 (HTML tags in annotation values are not escaped) created by Nicklas Nordborg
Keith Ching wrote: > it seems you can make a String annotation type …
9:48 AM Changeset [2877] by Nicklas Nordborg
Fixed exception when list of enumeration values is empty.

Nov 8, 2006:

4:16 PM Changeset [2876] by Martin Svensson
References #397 Removed fields that are not used.
3:27 PM Ticket #339 (Protocol parameters) closed by Nicklas Nordborg
fixed: (In [2875]) Fixes #339: Protocol parameters
3:27 PM Changeset [2875] by Nicklas Nordborg
Fixes #339: Protocol parameters
1:51 PM Ticket #427 (Browser main title displays version 2.0 irrespective the true version ...) created by base
1:46 PM Changeset [2874] by Martin Svensson
References #397 Checks that the whole offset was skipped.
12:57 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) created by Nicklas Nordborg
The Jobs list sometimes fill up very quickly, especially when …
10:52 AM Changeset [2873] by Martin Svensson
References #397 Dead local store.
8:29 AM Ticket #425 (Store the character encoding for text files) created by Nicklas Nordborg
When the FlatFileParser? reads files it uses the system default …
8:26 AM Ticket #424 (Make encoding used by FlatFileParser a configurable option) created by Nicklas Nordborg
When the FlatFileParser? reads files it uses the system default …

Nov 7, 2006:

2:41 PM Changeset [2872] by Martin Svensson
References #397 'Dead local store' fixed
1:51 PM Changeset [2871] by Martin Svensson
References #397 Dead store to local variable
1:11 PM Changeset [2870] by Martin Svensson
References #397 Method may fail to close database resource
11:35 AM Changeset [2869] by Jari Häkkinen
More getting started information.
11:27 AM Ticket #189 (Allow export plugins to send download immediately to client) closed by Nicklas Nordborg
fixed: (In [2868]) Fixes #189: Allow export plugins to send download …
11:27 AM Changeset [2868] by Nicklas Nordborg
Fixes #189: Allow export plugins to send download immediately to …
9:41 AM Changeset [2867] by Martin Svensson
References #397 The index of the parameters in PreparedStatement?
8:24 AM Ticket #423 (Create multiple slides wizard doesn't allow more than 3 characters in ...) created by Nicklas Nordborg
There is no need to have any restriction on that. The restriction on …

Nov 6, 2006:

4:12 PM Changeset [2866] by Martin Svensson
References #397 Null pointer dereference
9:34 AM Ticket #422 (updateindexes.sh can't find the unique index on the Feature table with ...) created by Nicklas Nordborg
It seems to be a problem that Postgres reporters that the index …
8:27 AM Changeset [2865] by Martin Svensson
Fixed bug: Inconsistent synchronization of …
7:41 AM Changeset [2864] by Martin Svensson
Fixed bug: Non-transient/non-serializable instance field in …
7:38 AM Changeset [2863] by Martin Svensson
Fixed bug: Nullcheck of value previously dereferenced
7:37 AM Changeset [2862] by Martin Svensson
Fixed bug: Null value is guaranteed to be dereferenced

Nov 3, 2006:

3:25 PM Changeset [2861] by Johan Enell
BASEfile can now be configured bun it cant execute
2:42 PM Ticket #421 (Select none when multiplicity is 0 (inifinite)) created by Johan Enell
I have created a PluginParameter? with multiplicity 0 and notNull false …
11:50 AM Changeset [2860] by Nicklas Nordborg
References #189: Allow export plugins to send download immediately to …
10:39 AM Changeset [2859] by Nicklas Nordborg
Added link to instructions for upgrading a Postgres database
10:37 AM Changeset [2858] by Nicklas Nordborg
Added link to instructions for upgrading a Postgres database
8:37 AM Changeset [2857] by Nicklas Nordborg
References #189: Allow export plugins to send download immediately to …
8:36 AM Changeset [2856] by Nicklas Nordborg
References #189: Allow export plugins to send download immediately to …

Nov 2, 2006:

2:59 PM Ticket #420 (Clear errors after each request) closed by Nicklas Nordborg
fixed: (In [2855]) Fixes #420: Clear errors after each request
2:59 PM Changeset [2855] by Nicklas Nordborg
Fixes #420: Clear errors after each request
2:51 PM Changeset [2854] by Nicklas Nordborg
References #189: Allow export plugins to send download immediately to …
2:26 PM Changeset [2853] by Nicklas Nordborg
Remove unsafe filename characters from User.getLogin() when used to …
11:41 AM Ticket #420 (Clear errors after each request) created by Johan Enell
When a job is configured using many requests the error list should be …

Nov 1, 2006:

1:42 PM Ticket #419 (allow bulk file upload directly into a separate directory) closed by Nicklas Nordborg
worksforme: The first statement that the zip uploader only can unpack to the …
12:54 PM Ticket #419 (allow bulk file upload directly into a separate directory) created by base
Currently the zip/jar bulk file upload will deposit files in the …
10:39 AM Changeset [2852] by Nicklas Nordborg
Fixes #378: Creation of configurations for plug-ins that do not need …
10:39 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) closed by Nicklas Nordborg
fixed: (In [2852]) Fixes #378: Creation of configurations for plug-ins that …
10:35 AM Changeset [2851] by Nicklas Nordborg
References #398: Version information in the "About" button Added info …
10:34 AM Ticket #398 (Version information in the "About" button) closed by Nicklas Nordborg
fixed: (In [2850]) Fixes #398: Version information in the "About" button
10:34 AM Changeset [2850] by Nicklas Nordborg
Fixes #398: Version information in the "About" button

Oct 31, 2006:

11:03 PM Changeset [2849] by Jari Häkkinen
Fixed typos in plug-in descriptions.
5:10 PM Milestone BASE 2.1 completed
This is the next release of BASE. We do not expect to release more …
4:56 PM Changeset [2848] by Jari Häkkinen
Updated information on how to publish a new release.
4:39 PM DownloadPage edited by Jari Häkkinen
Releasing v2.1 (diff)
4:19 PM Changeset [2847] by Jari Häkkinen
New bug fix branch for 2.1
4:18 PM Changeset [2846] by Jari Häkkinen
Tagging version 2.1
4:17 PM Changeset [2845] by Jari Häkkinen
Bumped version number in <description> tag.
4:14 PM Changeset [2844] by Jari Häkkinen
Removed stray paragraph.
4:11 PM Ticket #418 (Propagate the build number to the source package.) created by Jari Häkkinen
Bob says: The build number in the dialogue box is "#0" in my build of …
4:03 PM Ticket #293 (allow queuing of uploads) closed by Jari Häkkinen
duplicate: duplicate of #408
4:02 PM Ticket #278 (Trying to create a new plate.) closed by Jari Häkkinen
worksforme
2:31 PM Changeset [2843] by Nicklas Nordborg
Removed unused imports
2:30 PM Changeset [2842] by Nicklas Nordborg
Import of plugin configurations is now displayed by progress reporter
2:20 PM Changeset [2841] by Jari Häkkinen
Fixed typo.
2:18 PM Changeset [2840] by Jari Häkkinen
Changed default sharing of plug-ins. Alphabetized plug-in list.
2:06 PM Changeset [2839] by Johan Enell
Base1Executer throws an exception when average on gene is true. This …
2:02 PM Ticket #312 (ReporterType import) closed by Johan Enell
fixed: (In [2838]) Fixes #312
2:02 PM Changeset [2838] by Johan Enell
Fixes #312
12:29 PM Changeset [2837] by Jari Häkkinen
Exporting reporter ids. Made query code more robust for changes.
11:40 AM Ticket #410 (The inner class Base1PluginExecutor.PosRep should implement the ...) closed by Johan Enell
fixed: (In [2836]) Fixes #410
11:40 AM Changeset [2836] by Johan Enell
Fixes #410
11:28 AM Changeset [2835] by Jari Häkkinen
Removed comment header from MeV tab export. MeV does not support …
11:27 AM Changeset [2834] by Johan Enell
Base1executer will teminate if it cant find any configfile. fixes #409
11:24 AM Changeset [2833] by Nicklas Nordborg
Removed debug output.
11:18 AM Ticket #409 (Possible NullPointerException in Base1PluginExecutor) closed by Johan Enell
fixed: (In [2832]) Fixes #409
11:18 AM Changeset [2832] by Johan Enell
Fixes #409
11:18 AM Changeset [2831] by Nicklas Nordborg
Plugin configuration exporter now uses Integer parameter type for …
11:13 AM Changeset [2830] by Jari Häkkinen
Fixed inconsistencies with bioassay set spot view and exported data. …
9:53 AM Changeset [2829] by Nicklas Nordborg
Fixed incorrect permissions for plugin configuration exporter.
9:33 AM Ticket #336 (Install common file formats with main installation) closed by Martin Svensson
fixed: (In [2828]) Fixes #336 Install common file formats with main …
9:33 AM Changeset [2828] by Martin Svensson
Fixes #336 Install common file formats with main installation. Problem …
9:28 AM Changeset [2827] by Nicklas Nordborg
Updated requested permissions for export plugins
9:12 AM Changeset [2826] by Nicklas Nordborg
Fixed link to incorrect JavaScript? function
8:54 AM Changeset [2825] by Jari Häkkinen
Added BioAssaySetExporter? plugin to Install.java.
8:47 AM Changeset [2824] by Jari Häkkinen
Added BioAssaySetExporter? class.
8:35 AM Changeset [2823] by Nicklas Nordborg
References #350: Switch to another user functionality Missed to add …
8:31 AM Ticket #417 (Verify that schema version of the database match the core API) closed by Nicklas Nordborg
fixed: (In [2822]) Fixes #417: Verify that schema version of the database …
8:31 AM Changeset [2822] by Nicklas Nordborg
Fixes #417: Verify that schema version of the database match the core API

Oct 30, 2006:

7:09 PM Changeset [2821] by Jari Häkkinen
Added getVersionString utility function.
7:08 PM Changeset [2820] by Jari Häkkinen
Improved getting started doc.
6:25 PM Changeset [2819] by Jari Häkkinen
Fixed svn:keywords property.
2:58 PM Ticket #351 (External job server usage) closed by Nicklas Nordborg
fixed
2:55 PM Ticket #350 (Switch to another user functionality) closed by Nicklas Nordborg
fixed: (In [2818]) Fixes #350: Switch to another user functionality
2:55 PM Changeset [2818] by Nicklas Nordborg
Fixes #350: Switch to another user functionality
2:54 PM Ticket #417 (Verify that schema version of the database match the core API) created by Nicklas Nordborg
The core should verify that the database schema version matches what …
12:10 PM Ticket #416 (Only show plugin-buttons when the logged in user has access to at ...) closed by Nicklas Nordborg
fixed: (In [2817]) Fixes #416: Only show plugin-buttons when the logged in …
12:10 PM Changeset [2817] by Nicklas Nordborg
Fixes #416: Only show plugin-buttons when the logged in user has …
9:41 AM Ticket #416 (Only show plugin-buttons when the logged in user has access to at ...) created by Nicklas Nordborg
The web interface displays plugin buttons (Import/Export/Run? plugin) …
9:36 AM Changeset [2816] by Nicklas Nordborg
Fixed issues with proxy initialisation from statless session.

Oct 27, 2006:

2:10 PM Changeset [2815] by Nicklas Nordborg
References #215: Incorrect use of DynamicSpotQuery? in table view, plot …
1:38 PM Changeset [2814] by Nicklas Nordborg
Wrong return type for getColumn()
1:33 PM Ticket #415 (Can't select avg option in Experiment explorer when using Postgres) closed by Nicklas Nordborg
fixed: (In [2813]) Fixes #415: Can't select avg option in Experiment explorer …
1:33 PM Changeset [2813] by Nicklas Nordborg
Fixes #415: Can't select avg option in Experiment explorer when using …
12:58 PM Ticket #414 (Experiment explorer not working in Postgres) closed by Nicklas Nordborg
fixed: (In [2812]) Fixes #414: Experiment explorer not working in Postgres
12:58 PM Changeset [2812] by Nicklas Nordborg
Fixes #414: Experiment explorer not working in Postgres
12:18 PM Ticket #415 (Can't select avg option in Experiment explorer when using Postgres) created by Nicklas Nordborg
Got the followin error message: {{{ERROR: column "spt.position" must …
11:53 AM Ticket #414 (Experiment explorer not working in Postgres) created by Nicklas Nordborg
[…] SQL that was generated: […] Apparently, we are ordering by …

Oct 26, 2006:

12:05 PM Changeset [2811] by Nicklas Nordborg
Clear hidden 'exclude' filter that was set by popups
12:03 PM Changeset [2810] by Jari Häkkinen
Improving getting started doc.
10:59 AM Changeset [2809] by Nicklas Nordborg
Preload features using a stateless session to decrease memory usage.
10:07 AM Milestone BASE 2.0.3 completed
Issues to resolve for the next minor release.
10:05 AM Changeset [2808] by Jari Häkkinen
Removed obsolete branch 2.0.2.
10:04 AM DownloadPage edited by Jari Häkkinen
2.0.3 released. (diff)
9:38 AM Changeset [2807] by Jari Häkkinen
Tagging version 2.0.3
9:27 AM Changeset [2806] by Jari Häkkinen
Bumped version number to 2.0.3

Oct 25, 2006:

10:27 PM Ticket #413 (Add support for Oracle) created by Nicklas Nordborg
The current implementation doesn't work with Oracle databases for a …
4:07 PM Ticket #381 (User with administrator rights cannot share items (files) to group Everyone) closed by Nicklas Nordborg
worksforme
3:45 PM Ticket #407 (Lowess and Median ratio normalizations throws exceptions) closed by Johan Enell
fixed: (In [2805]) fixes #407
3:45 PM Changeset [2805] by Johan Enell
fixes #407
2:54 PM Changeset [2804] by Nicklas Nordborg
Fixed problem with databases (ie. Postgres) that throws exceptions …
1:09 PM Ticket #412 (Fix build.xml to make it more developer-friendly) created by Nicklas Nordborg
Currently there are issues with the location and naming of …
1:02 PM Ticket #411 (Extending compressed file support and storage) created by Jari Häkkinen
It would be nice if BASE core support would include storage of …
11:56 AM Changeset [2803] by Nicklas Nordborg
Changed decscription for default error handling to make it easier to …
11:18 AM Changeset [2802] by Nicklas Nordborg
Made it possible to select the requested permissions for a plugin
1:12 AM Changeset [2801] by Jari Häkkinen
Improving getting started doc.

Oct 24, 2006:

4:11 PM Changeset [2800] by Jari Häkkinen
Spell checked and renamed file.
4:03 PM Changeset [2799] by Jari Häkkinen
Added info.
2:34 PM Changeset [2798] by Jari Häkkinen
Updated information about affymetrix in BASE.
2:13 PM Changeset [2797] by Nicklas Nordborg
Fixed display of annotation title if the value is null
2:02 PM Changeset [2796] by Nicklas Nordborg
Fixed reporter and position index problem when moving to next …
12:15 PM Ticket #410 (The inner class Base1PluginExecutor.PosRep should implement the ...) created by Nicklas Nordborg
Using a PosMap? as a key in a hashmap doesn't work unless the both …
12:08 PM Ticket #409 (Possible NullPointerException in Base1PluginExecutor) created by Nicklas Nordborg
The following code throws NullPointerException? if 'f' is null. […]
11:56 AM Changeset [2795] by Nicklas Nordborg
Added 'final' keyword to static constants
11:55 AM Changeset [2794] by Nicklas Nordborg
Fixed invalid comparison to Float.NaN
11:50 AM Changeset [2793] by Nicklas Nordborg
Fixed possible null pointer exception
11:47 AM Changeset [2792] by Nicklas Nordborg
Fixed possible null pointer exception
11:42 AM Changeset [2791] by Nicklas Nordborg
Fixed possible null pointer exception
11:38 AM Changeset [2790] by Nicklas Nordborg
Fixed division and error message
11:36 AM Changeset [2789] by Nicklas Nordborg
Fixed invalid comparison to Float.NaN
11:33 AM Changeset [2788] by Nicklas Nordborg
Fixed possible null pointer exception
11:32 AM Changeset [2787] by Nicklas Nordborg
Added 'final' keyword to static constants
11:26 AM Changeset [2786] by Nicklas Nordborg
Added 'final' keyword to static constants
11:12 AM Changeset [2785] by Nicklas Nordborg
Fixed possible null pointer exception
11:09 AM Ticket #406 (Storing extended properties like information as annotations?) closed by Nicklas Nordborg
wontfix
11:00 AM Changeset [2784] by Nicklas Nordborg
Fixed possible null pointer exception.
10:52 AM Changeset [2783] by Nicklas Nordborg
Check for quota membership by quota group is now correct.
10:47 AM Changeset [2782] by Nicklas Nordborg
Keep the trimmed value
10:46 AM Changeset [2781] by Nicklas Nordborg
Fixed possible null pointer exception.
10:43 AM Changeset [2780] by Nicklas Nordborg
Removed unneeded call to SessionControl?.getPluginPermissions()
9:35 AM Changeset [2779] by Jari Häkkinen
Addresses #406. Removed references to annotations system since it …
8:55 AM Changeset [2778] by Nicklas Nordborg
Fixes #401: Filter plugin - failed to correctly apply filter on M …
8:51 AM Ticket #401 (Filter plugin - failed to correctly apply filter on M values) closed by Nicklas Nordborg
fixed: (In [2777]) Fixes #401: Filter plugin - failed to correctly apply …
8:51 AM Changeset [2777] by Nicklas Nordborg
Fixes #401: Filter plugin - failed to correctly apply filter on M …
8:45 AM Changeset [2776] by Nicklas Nordborg
Fixed some problems with the permission filter not always working due …
8:26 AM Changeset [2775] by Nicklas Nordborg
Allow to unshare to Group.EVERYONE even if user doesn't have …
8:19 AM Changeset [2774] by Nicklas Nordborg
Fixed incorrect index causing javascript error when selecting a …

Oct 23, 2006:

5:24 PM Changeset [2773] by Jari Häkkinen
Reformatted new revision section.
5:11 PM Changeset [2772] by Jari Häkkinen
Added developer information on how to run a server agains a WC.
4:49 PM Changeset [2771] by Jari Häkkinen
Added target installprg and changed other targets accordingly. …
2:55 PM Changeset [2770] by Nicklas Nordborg
Fixed incorrect filter when loading users.
2:42 PM Changeset [2769] by Nicklas Nordborg
Minor changes to instructions and fixed some example plot images.
2:39 PM Changeset [2768] by Nicklas Nordborg
Fixed javascript bug when array design isn't in a list.
2:00 PM Changeset [2767] by Nicklas Nordborg
Impersonation shouldn't check permissions on client.
1:25 PM Changeset [2766] by Nicklas Nordborg
Double click to move item types between lists
12:56 PM Changeset [2765] by Nicklas Nordborg
Disable warning message since it is incorrect for numeric form names.
12:52 PM Changeset [2764] by Jari Häkkinen
Removed obsolete comment relating to RC releases of BASE 2.0.
12:18 PM Changeset [2763] by Jari Häkkinen
Removed obsolete branch. Superseded by source:/branches/2.0.2
12:04 PM Changeset [2762] by Nicklas Nordborg
Do not set the focus for disabled elements (causes JavaScript? error in IE).
11:57 AM Changeset [2761] by Nicklas Nordborg
Removed call to non-existing JavaScript? function.
11:51 AM Changeset [2760] by Nicklas Nordborg
Fixed IE bugs in the "Test with file" feature.
10:00 AM Ticket #335 (Plugins for importing/exporting plugin configurations) closed by Martin Svensson
fixed
9:56 AM Changeset [2759] by Martin Svensson
Fixes #335 Plugins for importing/exporting plugin configurations
9:24 AM Ticket #408 (Implement FTP server) created by Nicklas Nordborg
Batch uploading of files can be much easier with a FTP server than …
9:15 AM Ticket #407 (Lowess and Median ratio normalizations throws exceptions) created by Nicklas Nordborg
[…] and […] The same problem has already been fixed in 2.1

Oct 22, 2006:

10:18 PM Changeset [2758] by Jari Häkkinen
Added information about extended properties.
10:18 PM Changeset [2757] by Jari Häkkinen
Added item to release recipe.
10:17 PM Changeset [2756] by Jari Häkkinen
Spell checked.
8:46 PM Ticket #406 (Storing extended properties like information as annotations?) created by Jari Häkkinen
There is reporter annotations stored as extended properties in the …
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Oct 20, 2006:

6:23 PM Ticket #405 (Highlight function in plot tool) created by Johan Vallon-Christersson
Add a new tab in the plot tool similar to the Filter tab. The function …
4:48 PM Changeset [2755] by Martin Svensson
References #335. Backup for the weekend.Plugins not quite ready yet.
2:12 PM Changeset [2754] by Nicklas Nordborg
Fixes #359: Sorting on mulitple columns in web tables
2:12 PM Ticket #359 (Sorting on mulitple columns in web tables) closed by Nicklas Nordborg
fixed: (In [2754]) Fixes #359: Sorting on mulitple columns in web tables
1:04 PM Ticket #404 (Replace deprecated Values class with the new one in all JSP pages) closed by Nicklas Nordborg
fixed: (In [2753]) Fixes #404: Replace deprecated Values class with the new …
1:04 PM Changeset [2753] by Nicklas Nordborg
Fixes #404: Replace deprecated Values class with the new one in all …
12:25 PM Ticket #404 (Replace deprecated Values class with the new one in all JSP pages) created by Nicklas Nordborg
Some time ago we moved the net.sf.basedb.clients.web.util.Values class …
12:23 PM Changeset [2752] by Nicklas Nordborg
Fixes #400: Negative values are not correctly displayed.
12:23 PM Ticket #400 (Negative values are not correctly displayed.) closed by Nicklas Nordborg
fixed: (In [2752]) Fixes #400: Negative values are not correctly displayed.
11:45 AM Ticket #403 (Make Bioassays and Bioassay sets annotatable) created by Johan Vallon-Christersson
Bioassays are currently not annotatable. It would, however, be …
11:42 AM Ticket #313 (Error handling in import plugins) closed by Nicklas Nordborg
fixed: (In [2751]) Fixes #313: Error handling in import plugins
11:42 AM Changeset [2751] by Nicklas Nordborg
Fixes #313: Error handling in import plugins
11:25 AM Ticket #402 (Add shortcut button for 'current item', 'current experiment' and ...) created by Johan Vallon-Christersson
If a session keeps track of the most recently viewed Experiment, …
11:14 AM Changeset [2750] by Nicklas Nordborg
Filter no longer create multiple child bioassays.
11:09 AM Ticket #401 (Filter plugin - failed to correctly apply filter on M values) created by Johan Vallon-Christersson
When applying a filter to create a filtered bioassay set using the …
11:01 AM Ticket #400 (Negative values are not correctly displayed.) created by Johan Vallon-Christersson
Negative M values are not displayed correctly in EExplorer. For …
9:22 AM Changeset [2749] by Nicklas Nordborg
Fixed bug that caused Lowess and Median normalizations to throw …
8:34 AM Changeset [2748] by Nicklas Nordborg
Added disabled version of "copy" icon.

Oct 19, 2006:

2:40 PM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) created by Johan Vallon-Christersson
When viewing a BioassaySet? in EExplorer the table over Bioassays …
2:16 PM Changeset [2747] by Johan Enell
Merged log:branches/2.0.1#2684:2740 to trunk.
11:53 AM Changeset [2746] by Nicklas Nordborg
Show only 30 rows as default.
Note: See TracTimeline for information about the timeline view.