Timeline
Oct 13, 2006:
- 7:18 PM Changeset [2730] by
- Fixes #395. Removed stray ' character.
- 7:18 PM Ticket #395 (typo in www/admin/plugindefinitions/edit_plugin.jsp) closed by
- fixed: (In [2730]) Fixes #395. Removed stray ' character.
- 6:52 PM Ticket #395 (typo in www/admin/plugindefinitions/edit_plugin.jsp) created by
- On line 143 in www/admin/plugindefinitions/edit_plugin.jsp …
- 11:58 AM Ticket #394 (Make it possible to export and properly query values in components) created by
- The ColoringData? component is the first component class we use in …
Oct 12, 2006:
- 11:43 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) closed by
- fixed: Fixed. The root cause of the problem was outside base project files.
- 11:12 PM Ticket #384 (Script files (.sh) do not have the proper file permission in linux) closed by
- fixed: Fixed in changeset:2729
- 11:06 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) reopened by
- 8:47 PM Ticket #387 (Can't remove reporters from a Reporter List) closed by
- invalid: This report was posted earlier today in the Hibernate bug tracking …
- 4:02 PM Changeset [2729] by
- Fixes #385. ant cannot keep file properties due to non-Java support …
- 4:02 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) closed by
- fixed: (In [2729]) Fixes #385. ant cannot keep file properties due to …
- 3:07 PM Changeset [2728] by
- fixes 392
- 2:40 PM Ticket #392 (Typo in Base1PluginExecuter.java) closed by
- fixed
- 1:28 PM Ticket #393 (Typo in Base1PluginExecuter) closed by
- fixed: (In [2727]) Fixed typo in getBase1Columns fixes #393
- 1:28 PM Changeset [2727] by
- Fixed typo in getBase1Columns fixes #393
- 1:27 PM Ticket #393 (Typo in Base1PluginExecuter) created by
- Typo in …
- 1:08 PM Ticket #392 (Typo in Base1PluginExecuter.java) created by
- Hi, I found a typo in …
- 11:00 AM Ticket #390 (Increase the performance of IntensityCalculatorPlugin) closed by
- fixed: Fixed in changeset [2726] Unfortunately MySQL doesn't seem to benefit …
- 10:58 AM Changeset [2726] by
- 8:15 AM Changeset [2725] by
- Fixed NullPointerException? when stopping BASE.
Oct 11, 2006:
- 2:29 PM Changeset [2724] by
- Fixes #388: When restarting a failed job it should be possible to …
- 2:29 PM Ticket #388 (When restarting a failed job it should be possible to select a new ...) closed by
- fixed: (In [2724]) Fixes #388: When restarting a failed job it should be …
- 2:01 PM Changeset [2723] by
- Fixes #389: Check the java and jsp files for System.out.println debug …
- 2:01 PM Ticket #389 (Check the java and jsp files for System.out.println debug output) closed by
- fixed: (In [2723]) Fixes #389: Check the java and jsp files for …
- 1:59 PM Ticket #391 (LowessNormalization has an if statement that does nothing.) created by
- Should something be happening here or can it be removed? […]
- 1:53 PM Ticket #386 (The AbstractEntityQuery.count() method doesn't enable filters) closed by
- fixed: In changeset [2722]
- 1:37 PM Ticket #220 (Plugin permissions) closed by
- fixed: (In [2722]) Fixes #220: Plugin permissions
- 1:37 PM Changeset [2722] by
- Fixes #220: Plugin permissions
- 12:30 PM Ticket #390 (Increase the performance of IntensityCalculatorPlugin) created by
- The current implementation always uses the IntensityCalculator? …
- 9:26 AM Ticket #389 (Check the java and jsp files for System.out.println debug output) created by
- I found two places just by accident. It is possible that there are more.
- 8:46 AM Ticket #388 (When restarting a failed job it should be possible to select a new ...) created by
- Ticket #318 changed how a job gets the plugin configuration parameters …
Oct 10, 2006:
- 6:41 PM Changeset [2721] by
- Removed debug output
- 3:39 PM Ticket #387 (Can't remove reporters from a Reporter List) created by
- Steps performed: Selected a bunch of reporters via their ID (approx. …
- 11:42 AM Ticket #386 (The AbstractEntityQuery.count() method doesn't enable filters) created by
- As a result, it counts all items, regardless of the query settings and …
Oct 9, 2006:
- 3:37 PM Changeset [2720] by
- Fixes #382: A very minimal extended-properties.xml creates null …
- 3:37 PM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) closed by
- fixed: (In [2720]) Fixes #382: A very minimal extended-properties.xml creates …
- 9:52 AM Changeset [2719] by
- References #335. The first part of a plugin configuration importer. No …
Oct 6, 2006:
- 9:52 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) created by
- In the case of base-2.0.1.tar.gz the directory created in extracting …
- 9:49 PM Ticket #384 (Script files (.sh) do not have the proper file permission in linux) created by
- This applies for the binary package. Check if the source package is ok.
- 9:44 PM Changeset [2718] by
- Finalized information about publishing a new release.
- 9:42 PM Changeset [2717] by
- Removed obsolete branch. Superseded by source:/branches/2.0.1
- 9:23 PM Ticket #383 (Should more docs be shipped with the binary package?) created by
- As it is now only installation.html is shipped. Should we include …
- 9:02 PM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) created by
- The bare minimum …
- 8:32 PM Ticket #381 (User with administrator rights cannot share items (files) to group Everyone) created by
- The Everyone group does not show up as an option when sharing files. …
- 2:26 PM Ticket #377 (hasData() flag not set on creation of new RawBioAssay, prevents ...) closed by
- worksforme
- 10:46 AM Ticket #220 (Plugin permissions) reopened by
- Reopened because the current solution with permission per thread …
- 8:05 AM Ticket #380 (Bug in Lowess) created by
- There is a bug in the Lowess plugin. Looping through the blocks …
- 1:44 AM Changeset [2716] by
- Fixed typos.
- 1:41 AM Changeset [2715] by
- First steps toward user documentation.
- 1:23 AM Changeset [2714] by
- Added section heading for howto change extended properties.
- 1:20 AM Changeset [2713] by
- Added documentation about extended-properties.xml.
- 12:29 AM Changeset [2712] by
- Fixed spelling.
- 12:27 AM Changeset [2711] by
- Fixed links and added mysql/innodb tuning info.
Oct 5, 2006:
- 2:56 PM Changeset [2710] by
- Merge commands has been added
- 2:36 PM Ticket #318 (Plugin configuration values are not stored for a job) closed by
- fixed: (In [2709]) Fixes #318: Plugin configuration values are not stored for …
- 2:36 PM Changeset [2709] by
- Fixes #318: Plugin configuration values are not stored for a job And …
- 8:38 AM Changeset [2708] by
- Fixed bug with linking if item.type is empty
Oct 4, 2006:
- 11:12 PM Changeset [2707] by
- Spell checked.
- 10:25 PM Changeset [2706] by
- Creating sample extended-properties.xml files.
- 10:09 PM Ticket #379 (BASE2: Fails to display Raw data from a RawBioassay imported from ...) closed by
- duplicate: This is a duplicate of ticket #99. A workaround is described in the …
- 5:43 PM Ticket #379 (BASE2: Fails to display Raw data from a RawBioassay imported from ...) created by
- I've done a migration from 1.2.17 to base 2.0. No glaring errors were …
- 4:46 PM Changeset [2705] by
- Removed references to RC2.
- 4:09 PM Changeset [2704] by
- Fixes #343: Plot tool should be able to use other annotations than bioassay
- 4:09 PM Ticket #343 (Plot tool should be able to use other annotations than bioassay) closed by
- fixed: (In [2704]) Fixes #343: Plot tool should be able to use other …
- 2:01 PM Changeset [2703] by
- Fixed some threading problems with Keyring and plugin permissions.
- 1:59 PM Changeset [2702] by
- Fixed unclosed DbControl?.
- 1:59 PM Changeset [2701] by
- Deny access if role permission has DENIED flag set.
- 1:58 PM Changeset [2700] by
- PluginRequest?.doInvoke() and SessionControl?.setActivePlugin() should …
- 1:55 PM Changeset [2699] by
- Fixed unclosed DbControl? in case of an exception while updating the …
- 9:59 AM Changeset [2698] by
- Fixed NoSuchElementException? bug when iterating over more than one …
- 9:14 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) created by
- Many plug-ins do not need configurations and in consequence these …
- 8:43 AM Changeset [2697] by
- References #368: Migration should migrate plugin settings for BASE 1 …
Oct 3, 2006:
- 5:00 PM Changeset [2696] by
- References #335 Export plugin for plugin configurations. Saves the …
- 3:47 PM Changeset [2695] by
- Installation now installs Base1PluginExecuter plugin.
- 3:44 PM Tickets #201,370,371 batch updated by
- fixed: (In [2694]) Fixes #201, #370 and #371 * Experiment directory * …
- 3:44 PM Changeset [2694] by
- Fixes #201, #370 and #371 * Experiment directory * Hyperlink to …
- 3:41 PM Ticket #377 (hasData() flag not set on creation of new RawBioAssay, prevents ...) created by
- When a new RawBioAssay? has been created and data have been imported …
- 1:44 PM Changeset [2693] by
- Fixes #368: Migration should migrate plugin settings for BASE 1 plugins
- 1:44 PM Ticket #368 (Migration should migrate plugin settings for BASE 1 plugins) closed by
- fixed: (In [2693]) Fixes #368: Migration should migrate plugin settings for …
- 1:30 PM Changeset [2692] by
- Fixes #220 Plugin permissions.
- 1:30 PM Ticket #220 (Plugin permissions) closed by
- fixed: (In [2692]) Fixes #220 Plugin permissions.
- 1:21 PM Ticket #220 (Plugin permissions) reopened by
- The plugin should ignore the owner- and project/shared permissions for …
- 9:35 AM Ticket #366 (Batch upload using zip-files) closed by
- fixed: (In [2691]) Fixes #366: Batch upload using zip-files
- 9:35 AM Changeset [2691] by
- Fixes #366: Batch upload using zip-files
- 8:28 AM Ticket #376 (Better system for checking which plugins that can be executed in a ...) created by
- The current implementation leads to lots of situation where you think …
Oct 2, 2006:
- 4:44 PM Changeset [2690] by
- Merged log:branches/2.0#2618:2688 from branch 2.0 to trunk.
- 4:04 PM Changeset [2689] by
- References #366: Batch upload using zip-files Added plugin for zip …
- 3:00 PM Changeset [2688] by
- Added AbsoluteProgressReporter? and two simple implementations.
- 2:05 PM Changeset [2687] by
- extra values added to pluginexecuter
- 1:24 PM Milestone BASE 2.0.1 completed
- Problems and bugs found in 2.0. These will be fixed ASAP. The next …
- 1:23 PM Ticket #332 (Fix bugs in migration program) closed by
- fixed: The known issues are fixed and we have made extensive manual testing …
- 12:43 PM Changeset [2686] by
- Added information on what to do when publishing a new release of BASE.
- 12:35 PM Changeset [2685] by
- New bug fix branch for 2.0.1.
- 12:29 PM DownloadPage edited by
- Added version information to the download table. (diff)
- 12:27 PM DownloadPage edited by
- Removed obsolete packages. (diff)
- 12:26 PM DownloadPage edited by
- Version 2.0.1 released. (diff)
- 11:44 AM Changeset [2684] by
- Tagging version 2.0.1
- 11:40 AM Changeset [2683] by
- Bumped version number. Added disclaimer text to migration.
- 10:50 AM Changeset [2682] by
- Spell checked.
Oct 1, 2006:
- 9:34 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) created by
- As it is now the properties view will tell the user that the item is …
Sep 29, 2006:
- 9:58 AM Changeset [2681] by
- References #366: Batch upload using zip-files Added utility class and …
Sep 28, 2006:
- 4:33 PM Changeset [2680] by
- References #335 A beginning of a PluginConfigurationExporter?.
- 2:01 PM Changeset [2679] by
- The AbstractFlatFileImporter?.requiresConfiguration() now returns true …
- 1:52 PM Ticket #361 (Export of bioassaysets) closed by
- fixed: (In [2678]) Fixes #361: Export of bioassaysets
- 1:52 PM Changeset [2678] by
- Fixes #361: Export of bioassaysets
- 11:54 AM Changeset [2677] by
- Remember recently used files and other items when importing and …
- 11:06 AM Changeset [2676] by
- Added image to Abort button in file upload. Added image for Browse buttons.
- 10:58 AM Changeset [2675] by
- Displaying permissions for a plugindefinition on it's view page.
- 10:03 AM Changeset [2674] by
- Removed debug code
- 10:01 AM Ticket #169 (Use formulas for creating extra values) closed by
- fixed: (In [2673]) Fixes #169: Use formulas for creating extra values Also …
- 10:01 AM Changeset [2673] by
- Fixes #169: Use formulas for creating extra values Also added plugin …
- 9:49 AM Changeset [2672] by
- Corrupt page when open creating a new plugindefinition is fixed
- 8:06 AM DownloadPage edited by
- (diff)
- 7:58 AM DownloadPage edited by
- (diff)
Sep 27, 2006:
- 4:08 PM Ticket #220 (Plugin permissions) closed by
- fixed: (In [2671]) Fixes #220 Plugin permissions
- 4:08 PM Changeset [2671] by
- Fixes #220 Plugin permissions
- 3:47 PM Changeset [2670] by
- Added "Add" and "Remove" images to default images.
- 1:44 PM Tickets #342,344 batch updated by
- fixed: (In [2669]) Fixes #342 and #344: Display extra values in plot tool and …
- 1:44 PM Changeset [2669] by
- Fixes #342 and #344: Display extra values in plot tool and tables, etc.
- 11:58 AM Changeset [2668] by
- Fixed problem in formatNumber method that displayed an extra minus …
Sep 26, 2006:
- 4:07 PM Changeset [2667] by
- Added QueryElement?.getChildren() method.
- 2:59 PM Changeset [2666] by
- Can now use the externalId in extra value expression with JEP.
- 1:36 PM Changeset [2665] by
- Added a note about warning for an unclosed DbControl?
- 1:28 PM Changeset [2664] by
- References #342, #344 and #169 Extra values are now displayed in a …
- 1:08 PM Changeset [2663] by
- Added createJepExpression method
- 1:06 PM Changeset [2662] by
- Added storeValue() method
- 1:00 PM Changeset [2661] by
- Create copy of list of values to avoid external manipulation after the …
- 9:18 AM Ticket #374 (Restoring a Bioassayset or Transformation restores all child bioassay ...) created by
- If you for example have marked one part of the analysis for deletion …
Sep 25, 2006:
- 9:32 AM Changeset [2660] by
- References #220 Store the plugin's keyring information in a local …
Sep 22, 2006:
- 11:08 PM WikiStart edited by
- Minor sponsor fixes. (diff)
- 11:06 PM WikiStart edited by
- Added sponsor logos. (diff)
- 10:50 PM WikiStart edited by
- Removed footer link to title index. (diff)
- 1:45 PM Changeset [2659] by
- Fixes #373: Wrong character for less then
- 1:45 PM Ticket #373 (Wrong character for less then) closed by
- fixed: (In [2659]) Fixes #373: Wrong character for less then
- 1:37 PM Changeset [2658] by
- Refences #169: Use formulas for creating extra values Added admin …
- 1:34 PM Changeset [2657] by
- References #220 1 Put the handle of plugin permissions into Keyring. …
- 12:49 PM Changeset [2656] by
- Tab can automatically adjust the height when popup window is beeing …
- 12:47 PM Ticket #373 (Wrong character for less then) created by
- In the expression builder view the greater then or equal(>=) is shown …
- 9:51 AM Ticket #301 (Better GUI for defining file formats) closed by
- fixed: (In [2655]) Fixes #301: Better GUI for defining file formats
- 9:51 AM Changeset [2655] by
- Fixes #301: Better GUI for defining file formats
Sep 21, 2006:
- 2:29 PM Changeset [2654] by
- Log stacktrace in case of an exception
- 12:49 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) created by
- CEL files contains information about the ArrayDesign? used to generated …
- 12:15 PM Ticket #371 (Add a field Publication Title to the Publication Page in Experiment Section) created by
- 12:13 PM Ticket #370 (Hyperlink to Pubmed if Pubmed id submitted from Publication Page in ...) created by
- $pubmed_id should be an integer. linking to EBI's Citexplore using …
- 10:41 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) created by
- When setting an 'annotationType' as ExperimentalFactor? in a given …
- 9:25 AM Changeset [2653] by
- Change minor version to 1
Sep 20, 2006:
- 10:56 AM Ticket #368 (Migration should migrate plugin settings for BASE 1 plugins) created by
- The settings should be stored as different configurations for the …
Sep 19, 2006:
- 4:01 PM Changeset [2652] by
- References #220. Fixed nullpointerexception when calling invoke() in …
- 2:46 PM Changeset [2651] by
- The agent should not stop BASE. It may run inside another application.
- 2:32 PM Changeset [2650] by
- Fixes #363: Updating from RC1 throws NullPointerException?
- 2:32 PM Ticket #363 (Updating from RC1 throws NullPointerException) closed by
- fixed: (In [2650]) Fixes #363: Updating from RC1 throws NullPointerException?
- 2:27 PM Changeset [2649] by
- Now uses ant task instead of external program to get the subversion …
- 1:30 PM Changeset [2648] by
- References #351: External job server usage Most functionality is now …
- 8:07 AM Ticket #367 (Error on "About" update) closed by
- fixed: (In [2647]) Fixes #367: Error on "About" update
- 8:07 AM Changeset [2647] by
- Fixes #367: Error on "About" update
- 8:01 AM DownloadPage edited by
- Added warning about the using the trunk (diff)
Sep 18, 2006:
- 7:33 PM Ticket #367 (Error on "About" update) created by
- Built from subversion checkout, up to changeset 2622. Build and …
- 2:41 PM Changeset [2646] by
- References #220 Using the plugin permissions when a plugin is executed.
- 12:41 PM Changeset [2645] by
- Removing branch that has been merged into trunk.
- 11:19 AM Changeset [2644] by
- Removing a never used branch.
Sep 15, 2006:
- 4:45 PM Ticket #366 (Batch upload using zip-files) created by
- A way to provide batch upload is to create an upload plug-in that …
- 4:43 PM Ticket #365 (Use java web start to launch plug-ins) created by
- In order to support more powerful visualization plug-ins we should …
- 4:11 PM Ticket #364 (Support for automatic install of non-core plugins) created by
- It would be nice to get an automatic install/update of non-core …
- 4:08 PM Changeset [2643] by
- References #351: External job server usage In-process job executor is …
- 3:57 PM Changeset [2642] by
- Refs #363. Added information about the RC1 to 2.0 updating problem.
- 3:47 PM Ticket #363 (Updating from RC1 throws NullPointerException) created by
- […] The problem is that there is no SchemaVersion? information in …
Sep 14, 2006:
- 12:17 PM Changeset [2641] by
- References #351: External job server usage The core of the job agent …
Sep 13, 2006:
- 1:51 PM Changeset [2640] by
- References #220 Improved the handling of permissions in PluginDefinitions?
- 9:47 AM Changeset [2639] by
- target 'web' now depends on 'main'.
- 9:43 AM Changeset [2638] by
- Added copyright and license header
- 9:05 AM Changeset [2637] by
- Deprecated net.sf.basedb.clients.web.util.Values. Use …
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