Timeline
Sep 28, 2006:
- 4:33 PM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by
- (In [2680]) References #335 A beginning of a PluginConfigurationExporter.
- 4:33 PM Changeset [2680] by
- References #335 A beginning of a PluginConfigurationExporter.
- 2:36 PM Ticket #366 (Batch upload using zip-files) updated by
-
Status, Owner changed
- 2:01 PM Changeset [2679] by
- The AbstractFlatFileImporter.requiresConfiguration() now returns true …
- 1:52 PM Ticket #361 (Export of bioassaysets) closed by
- fixed: (In [2678]) Fixes #361: Export of bioassaysets
- 1:52 PM Changeset [2678] by
- Fixes #361: Export of bioassaysets
- 11:58 AM Ticket #361 (Export of bioassaysets) updated by
-
Owner, Status changed
- 11:54 AM Changeset [2677] by
- Remember recently used files and other items when importing and …
- 11:06 AM Changeset [2676] by
- Added image to Abort button in file upload. Added image for Browse buttons.
- 10:58 AM Changeset [2675] by
- Displaying permissions for a plugindefinition on it's view page.
- 10:03 AM Changeset [2674] by
- Removed debug code
- 10:01 AM Ticket #169 (Use formulas for creating extra values) closed by
- fixed: (In [2673]) Fixes #169: Use formulas for creating extra values Also …
- 10:01 AM Changeset [2673] by
- Fixes #169: Use formulas for creating extra values Also added plugin …
- 9:49 AM Changeset [2672] by
- Corrupt page when open creating a new plugindefinition is fixed
- 8:43 AM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by
-
Status changed
- 8:06 AM DownloadPage edited by
- (diff)
- 7:58 AM DownloadPage edited by
- (diff)
Sep 27, 2006:
- 4:08 PM Ticket #220 (Plugin permissions) closed by
- fixed: (In [2671]) Fixes #220 Plugin permissions
- 4:08 PM Changeset [2671] by
- Fixes #220 Plugin permissions
- 3:47 PM Changeset [2670] by
- Added "Add" and "Remove" images to default images.
- 1:44 PM Tickets #342,344 batch updated by
- fixed: (In [2669]) Fixes #342 and #344: Display extra values in plot tool and …
- 1:44 PM Changeset [2669] by
- Fixes #342 and #344: Display extra values in plot tool and tables, etc.
- 11:58 AM Changeset [2668] by
- Fixed problem in formatNumber method that displayed an extra minus …
Sep 26, 2006:
- 4:07 PM Changeset [2667] by
- Added QueryElement.getChildren() method.
- 2:59 PM Changeset [2666] by
- Can now use the externalId in extra value expression with JEP.
- 1:36 PM Changeset [2665] by
- Added a note about warning for an unclosed DbControl
- 1:28 PM Tickets #342,344,169 batch updated by
- (In [2664]) References #342, #344 and #169 Extra values are now …
- 1:28 PM Changeset [2664] by
- References #342, #344 and #169 Extra values are now displayed in a …
- 1:08 PM Changeset [2663] by
- Added createJepExpression method
- 1:06 PM Changeset [2662] by
- Added storeValue() method
- 1:00 PM Changeset [2661] by
- Create copy of list of values to avoid external manipulation after the …
- 9:18 AM Ticket #374 (Restoring a Bioassayset or Transformation restores all child bioassay ...) created by
- If you for example have marked one part of the analysis for deletion …
Sep 25, 2006:
- 3:57 PM Ticket #344 (Display extra values in data tables and other places) updated by
-
Status, Owner changed
- 3:56 PM Ticket #342 (Plot tool should be able to use extra values) updated by
-
Status changed
- 9:32 AM Ticket #220 (Plugin permissions) updated by
- (In [2660]) References #220 Store the plugin's keyring information in …
- 9:32 AM Changeset [2660] by
- References #220 Store the plugin's keyring information in a local …
Sep 22, 2006:
- 11:08 PM WikiStart edited by
- Minor sponsor fixes. (diff)
- 11:06 PM WikiStart edited by
- Added sponsor logos. (diff)
- 10:50 PM WikiStart edited by
- Removed footer link to title index. (diff)
- 1:45 PM Changeset [2659] by
- Fixes #373: Wrong character for less then
- 1:45 PM Ticket #373 (Wrong character for less then) closed by
- fixed: (In [2659]) Fixes #373: Wrong character for less then
- 1:37 PM Changeset [2658] by
- Refences #169: Use formulas for creating extra values Added admin …
- 1:34 PM Ticket #220 (Plugin permissions) updated by
- (In [2657]) References #220 1 Put the handle of plugin permissions …
- 1:34 PM Changeset [2657] by
- References #220 1 Put the handle of plugin permissions into Keyring. …
- 12:55 PM Ticket #169 (Use formulas for creating extra values) updated by
-
Status changed
- 12:49 PM Changeset [2656] by
- Tab can automatically adjust the height when popup window is beeing …
- 12:47 PM Ticket #373 (Wrong character for less then) created by
- In the expression builder view the greater then or equal(>=) is shown …
- 10:02 AM Ticket #365 (Use java web start to launch plug-ins) updated by
-
Type, Milestone changed
- 9:51 AM Ticket #301 (Better GUI for defining file formats) closed by
- fixed: (In [2655]) Fixes #301: Better GUI for defining file formats
- 9:51 AM Changeset [2655] by
- Fixes #301: Better GUI for defining file formats
- 9:50 AM Ticket #371 (Add a field Publication Title to the Publication Page in Experiment Section) updated by
-
Milestone, Component changed
- 9:49 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by
-
Type changed
- 9:49 AM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by
-
Component, Milestone changed
- 9:48 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by
-
Milestone changed
Sep 21, 2006:
- 4:37 PM Ticket #326 (Mass annotation plug-in) updated by
- If the plug-in can figure out in what context it is run it will be …
- 2:29 PM Changeset [2654] by
- Log stacktrace in case of an exception
- 12:49 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) created by
- CEL files contains information about the ArrayDesign used to generated …
- 12:15 PM Ticket #371 (Add a field Publication Title to the Publication Page in Experiment Section) created by
- 12:13 PM Ticket #370 (Hyperlink to Pubmed if Pubmed id submitted from Publication Page in ...) created by
- $pubmed_id should be an integer. linking to EBI's Citexplore using …
- 10:41 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) created by
- When setting an 'annotationType' as ExperimentalFactor in a given …
- 9:25 AM Changeset [2653] by
- Change minor version to 1
Sep 20, 2006:
- 11:43 AM Ticket #339 (Protocol parameters) updated by
-
Priority changed
- 11:43 AM Ticket #337 (Tab2Mage export plugin) updated by
- Depends on ticket:339
- 11:35 AM Ticket #366 (Batch upload using zip-files) updated by
-
Type changed
- 11:33 AM Ticket #336 (Install common file formats with main installation) updated by
- This should be expanded to included default configurations for shipped …
- 11:26 AM Ticket #313 (Error handling in import plugins) updated by
-
Summary, Milestone changed
- 11:23 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Summary, Milestone changed
- 11:14 AM Ticket #349 (Callback for events to plugins) updated by
-
Milestone changed
- 11:13 AM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by
-
Milestone changed
- 11:12 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
-
Milestone changed
- 11:10 AM Ticket #153 (More progress from importer plug-ins) updated by
-
Milestone changed
- 11:09 AM Ticket #140 (Write documentation: 5e) Secondary file storage) updated by
-
Milestone changed
- 11:09 AM Ticket #138 (Write documentation: 5c) Authentication plug-ins) updated by
-
Milestone changed
- 10:56 AM Ticket #368 (Migration should migrate plugin settings for BASE 1 plugins) created by
- The settings should be stored as different configurations for the …
Sep 19, 2006:
- 4:01 PM Changeset [2652] by
- References #220. Fixed nullpointerexception when calling invoke() in …
- 4:01 PM Ticket #220 (Plugin permissions) updated by
- (In [2652]) References #220. Fixed nullpointerexception when calling …
- 2:57 PM Ticket #301 (Better GUI for defining file formats) updated by
-
Status changed
- 2:46 PM Changeset [2651] by
- The agent should not stop BASE. It may run inside another application.
- 2:32 PM Changeset [2650] by
- Fixes #363: Updating from RC1 throws NullPointerException
- 2:32 PM Ticket #363 (Updating from RC1 throws NullPointerException) closed by
- fixed: (In [2650]) Fixes #363: Updating from RC1 throws NullPointerException
- 2:27 PM Changeset [2649] by
- Now uses ant task instead of external program to get the subversion …
- 1:30 PM Ticket #351 (External job server usage) updated by
- (In [2648]) References #351: External job server usage Most …
- 1:30 PM Changeset [2648] by
- References #351: External job server usage Most functionality is now …
- 8:07 AM Ticket #367 (Error on "About" update) closed by
- fixed: (In [2647]) Fixes #367: Error on "About" update
- 8:07 AM Changeset [2647] by
- Fixes #367: Error on "About" update
- 8:02 AM Ticket #367 (Error on "About" update) updated by
-
Milestone, Version, Owner, Status changed
- 8:01 AM DownloadPage edited by
- Added warning about the using the trunk (diff)
Sep 18, 2006:
- 7:33 PM Ticket #367 (Error on "About" update) created by
- Built from subversion checkout, up to changeset 2622. Build and …
- 2:41 PM Ticket #220 (Plugin permissions) updated by
- (In [2646]) References #220 Using the plugin permissions when a plugin …
- 2:41 PM Changeset [2646] by
- References #220 Using the plugin permissions when a plugin is executed.
- 12:41 PM Changeset [2645] by
- Removing branch that has been merged into trunk.
- 11:19 AM Changeset [2644] by
- Removing a never used branch.
Sep 15, 2006:
- 4:45 PM Ticket #366 (Batch upload using zip-files) created by
- A way to provide batch upload is to create an upload plug-in that …
- 4:43 PM Ticket #365 (Use java web start to launch plug-ins) created by
- In order to support more powerful visualization plug-ins we should …
- 4:11 PM Ticket #364 (Support for automatic install of non-core plugins) created by
- It would be nice to get an automatic install/update of non-core …
- 4:08 PM Ticket #351 (External job server usage) updated by
- (In [2643]) References #351: External job server usage In-process job …
- 4:08 PM Changeset [2643] by
- References #351: External job server usage In-process job executor is …
- 3:57 PM Ticket #363 (Updating from RC1 throws NullPointerException) updated by
- (In [2642]) Refs #363. Added information about the RC1 to 2.0 updating …
- 3:57 PM Changeset [2642] by
- Refs #363. Added information about the RC1 to 2.0 updating problem.
- 3:47 PM Ticket #363 (Updating from RC1 throws NullPointerException) updated by
-
Description changed
- 3:47 PM Ticket #363 (Updating from RC1 throws NullPointerException) created by
- […] The problem is that there is no SchemaVersion information in …
Sep 14, 2006:
- 12:17 PM Ticket #351 (External job server usage) updated by
- (In [2641]) References #351: External job server usage The core of …
- 12:17 PM Changeset [2641] by
- References #351: External job server usage The core of the job agent …
Sep 13, 2006:
- 1:51 PM Changeset [2640] by
- References #220 Improved the handling of permissions in PluginDefinitions
- 1:51 PM Ticket #220 (Plugin permissions) updated by
- (In [2640]) References #220 Improved the handling of permissions in …
- 9:47 AM Changeset [2639] by
- target 'web' now depends on 'main'.
- 9:43 AM Changeset [2638] by
- Added copyright and license header
- 9:05 AM Changeset [2637] by
- Deprecated net.sf.basedb.clients.web.util.Values. Use …
Sep 12, 2006:
- 4:21 PM Changeset [2636] by
- Refereces #220. Separate permissions for plugindefinitions. The use of …
- 2:48 PM Changeset [2635] by
- Semi-automatic detection if Hibernate mappings needs to be generated or not
- 2:24 PM Ticket #351 (External job server usage) updated by
- (In [2634]) References #351: External job server usage Communincation …
- 2:24 PM Changeset [2634] by
- References #351: External job server usage Communincation with the …
- 8:22 AM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) updated by
-
Summary changed
- 8:21 AM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) closed by
- wontfix: If you wish to do this you have to configure Tomcat differently. The …
- 12:45 AM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) updated by
- Sorry, I was not clear enogh in my first report. I have web.xml …
Sep 11, 2006:
- 7:59 AM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) updated by
-
Priority, Summary changed
This exception shouldn't be displayed as a stacktrace. There are two …
Sep 9, 2006:
- 11:09 PM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) created by
- The below exception is thrown when ones tries to run an analysis …
- 3:48 PM Changeset [2633] by
- Added link to http://base.thep.lu.se
- 2:07 AM Ticket #361 (Export of bioassaysets) created by
- A plug-in to export bioassay data is needed as reported at the …
Sep 8, 2006:
- 4:06 PM Changeset [2632] by
- References #351: External job server usage Started to implement the …
- 4:06 PM Ticket #351 (External job server usage) updated by
- (In [2632]) References #351: External job server usage Started to …
- 12:17 PM Ticket #351 (External job server usage) updated by
- (In [2631]) References #351: External job server usage Update web …
- 12:17 PM Changeset [2631] by
- References #351: External job server usage Update web pages for …
- 9:27 AM Ticket #360 (Make subsections on view pages hideable) created by
- Some view pages for items have lots of information on them and they …
- 9:21 AM Changeset [2630] by
- Fixed compilatio errors in test program after change to JobAgent
- 9:17 AM Changeset [2629] by
- References #351: External job server usage Added web pages for …
Sep 7, 2006:
- 2:23 PM Changeset [2628] by
- Added svndigest:ignore property on test data files.
- 11:20 AM Ticket #351 (External job server usage) updated by
- (In [2627]) References #351: External job server usage Added data …
- 11:20 AM Changeset [2627] by
- References #351: External job server usage Added data layer class, …
- 11:07 AM Changeset [2626] by
- Updated UML-diagram with entity value for plugin permissions.
- 9:36 AM Ticket #359 (Sorting on mulitple columns in web tables) created by
- Sometimes you want to sort the results using multiple columns. For …
Sep 6, 2006:
- 4:09 PM Changeset [2625] by
- Added JobAgent to UML diagram
Sep 5, 2006:
- 5:02 PM Changeset [2624] by
- Updated the documentation with information about plugin permissions.
- 1:04 PM DeveloperInformation edited by
- Changed link for development plan to roadmap (diff)
- 1:01 PM Changeset [2623] by
- Removed links to the very old development status pages. Fixed redirect …
- 12:47 PM Ticket #351 (External job server usage) updated by
-
Status changed
- 12:01 PM Ticket #332 (Fix bugs in migration program) updated by
- (In [2622]) References #332: Fix bugs in migration program This …
- 12:01 PM Changeset [2622] by
- References #332: Fix bugs in migration program This should fix most …
- 11:20 AM Ticket #358 (Better info from Migration tool) updated by
-
Component changed
- 11:20 AM Ticket #358 (Better info from Migration tool) created by
- The output of the migration tool is somewhat sporadic and not very …
Sep 4, 2006:
- 4:36 PM Ticket #220 (Plugin permissions) updated by
-
Status changed
- 3:49 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Owner changed
- 3:49 PM Ticket #220 (Plugin permissions) updated by
-
Owner changed
- 3:47 PM Ticket #336 (Install common file formats with main installation) updated by
-
Owner changed
- 3:47 PM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by
-
Owner changed
- 3:47 PM Ticket #344 (Display extra values in data tables and other places) updated by
-
Owner changed
- 11:18 AM Ticket #332 (Fix bugs in migration program) updated by
- Also:: Protocol is not connected with Hybridization
Sep 1, 2006:
- 4:49 PM Changeset [2621] by
- Merge file added
- 4:39 PM Ticket #332 (Fix bugs in migration program) updated by
- * One more issue found. Original and remaining quantity for extracts …
- 4:31 PM Tickets #355,356,357 batch updated by
- fixed: (In [2620]) fixes #355 #356 #357
- 4:31 PM Changeset [2620] by
- fixes #355 #356 #357
- 4:24 PM Ticket #357 (Importing datamatrix) created by
- The Base1PluginExecuter cant import a matrix base file
- 4:23 PM Ticket #356 (Nullpointer in Base1PluginExecuter) created by
- When exporting a hidden string the Base1PluginExecuter is throwing a …
- 4:21 PM Ticket #355 (Log2ratio is calculated wrong in base1executer) created by
- The log2ratio is wrong when exporting data in Base1PluginExecuter
- 3:44 PM Changeset [2619] by
- Removed RC2.
- 2:04 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
-
Milestone changed
- 2:00 PM Ticket #332 (Fix bugs in migration program) updated by
-
Milestone changed
- 1:21 PM Ticket #332 (Fix bugs in migration program) updated by
-
Summary changed
Here are some more issues that I have found: * BASE 1 permissions …
Aug 31, 2006:
- 2:32 PM Milestone BASE 2.0 completed
- This milestone includes * Affymetrix support (delayed from RC2, will …
- 2:32 PM WikiStart edited by
- 2.0 released. (diff)
- 2:23 PM DownloadPage edited by
- (diff)
- 2:21 PM DownloadPage edited by
- (diff)
- 1:38 PM Changeset [2618] by
- Create bugfix branch for 2.0
- 1:37 PM Changeset [2617] by
- Releasing 2.0
- 1:23 PM Changeset [2616] by
- Oracle JDBC driver is not needed
- 1:17 PM Changeset [2615] by
- Added info about debug parameter for the migration.
- 1:13 PM Ticket #332 (Fix bugs in migration program) updated by
- (In [2614]) References #332: Base 1 ID lookup is unstable Should fix …
- 1:13 PM Changeset [2614] by
- References #332: Base 1 ID lookup is unstable Should fix the original …
- 1:10 PM Changeset [2613] by
- Fixes incorrect plate mappings installed by previous releases.
- 11:32 AM Ticket #354 (Copy transformation) updated by
-
Owner, Status changed
Aug 30, 2006:
- 10:01 PM Changeset [2612] by
- Fixed batch files for running test programs in windows.
- 4:35 PM Ticket #264 (Base1 plug-in executer enhancements) closed by
- fixed
- 4:34 PM Changeset [2611] by
- Fixex #264
- 4:23 PM Changeset [2610] by
- Filled up some javaDocs
- 4:06 PM Changeset [2609] by
- Added people to credits list.
- 1:48 PM Changeset [2608] by
- Added information about the broken migration tool.
- 10:23 AM Changeset [2607] by
- Fixed NullPointerException in configure() method
- 8:03 AM Changeset [2606] by
- Removed non-existing email address from plugins.
- 7:57 AM Changeset [2605] by
- Changed text about Type.ITEM to not talk about lists any more.
Aug 29, 2006:
- 3:59 PM Changeset [2604] by
- Removed category duplication
- 2:59 PM Changeset [2603] by
- added some html.javaScriptEncode lines
- 2:11 PM Ticket #354 (Copy transformation) updated by
-
Description changed
- 1:41 PM Ticket #354 (Copy transformation) created by
- A copy action for transformations. Create a new transformation from …
- 12:12 PM Changeset [2602] by
- Removed category duplication
- 11:32 AM Changeset [2601] by
- Updated Javadoc and added missing imports for javadoc ref.
- 10:01 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
-
Component, Owner changed
- 10:01 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by
-
Component changed
- 10:00 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) created by
- As a part of our effort in an EU project http://www.eu-acgt.org we …
- 9:58 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
-
Type changed
- 9:58 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) created by
- We are going to connect parts of the TM4 suite (http://www.tm4.org) to …
- 8:20 AM Ticket #332 (Fix bugs in migration program) updated by
-
Status changed
- 8:17 AM Ticket #340 (Experiment validation tool) updated by
-
Priority changed
- 8:16 AM Ticket #311 (Allow parsing of numbers with different locale settings) updated by
-
Priority changed
- 8:16 AM Ticket #317 (Display and enter dates in different formats) updated by
-
Priority changed
- 8:15 AM Ticket #333 (Administrator documentation) updated by
-
Priority changed
- 8:15 AM Ticket #337 (Tab2Mage export plugin) updated by
-
Priority changed
- 8:06 AM Ticket #169 (Use formulas for creating extra values) updated by
-
Priority changed
- 8:05 AM Ticket #313 (Error handling in import plugins) updated by
-
Priority changed
- 8:04 AM Ticket #349 (Callback for events to plugins) updated by
-
Priority changed
- 8:04 AM Ticket #351 (External job server usage) updated by
-
Type changed
- 8:03 AM Ticket #318 (Plugin configuration values are not stored for a job) updated by
-
Priority changed
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