Timeline
Aug 29, 2006:
- 3:59 PM Changeset [2604] by
- Removed category duplication
- 2:59 PM Changeset [2603] by
- added some html.javaScriptEncode lines
- 2:11 PM Ticket #354 (Copy transformation) updated by
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Description changed
- 1:41 PM Ticket #354 (Copy transformation) created by
- A copy action for transformations. Create a new transformation from …
- 12:12 PM Changeset [2602] by
- Removed category duplication
- 11:32 AM Changeset [2601] by
- Updated Javadoc and added missing imports for javadoc ref.
- 10:01 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
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Owner, Component changed
- 10:01 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by
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Component changed
- 10:00 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) created by
- As a part of our effort in an EU project http://www.eu-acgt.org we …
- 9:58 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) updated by
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Type changed
- 9:58 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) created by
- We are going to connect parts of the TM4 suite (http://www.tm4.org) to …
- 8:20 AM Ticket #332 (Fix bugs in migration program) updated by
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Status changed
- 8:17 AM Ticket #340 (Experiment validation tool) updated by
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Priority changed
- 8:16 AM Ticket #311 (Allow parsing of numbers with different locale settings) updated by
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Priority changed
- 8:16 AM Ticket #317 (Display and enter dates in different formats) updated by
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Priority changed
- 8:15 AM Ticket #333 (Administrator documentation) updated by
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Priority changed
- 8:15 AM Ticket #337 (Tab2Mage export plugin) updated by
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Priority changed
- 8:06 AM Ticket #169 (Use formulas for creating extra values) updated by
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Priority changed
- 8:05 AM Ticket #313 (Error handling in import plugins) updated by
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Priority changed
- 8:04 AM Ticket #349 (Callback for events to plugins) updated by
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Priority changed
- 8:04 AM Ticket #351 (External job server usage) updated by
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Type changed
- 8:03 AM Ticket #318 (Plugin configuration values are not stored for a job) updated by
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Priority changed
Aug 28, 2006:
- 4:06 PM Ticket #332 (Fix bugs in migration program) updated by
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Version changed
- 4:06 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
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Version changed
- 3:27 PM Ticket #332 (Fix bugs in migration program) updated by
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Priority changed
- 3:27 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
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Priority changed
- 3:26 PM Ticket #351 (External job server usage) created by
- Add possibility to run jobs in other JVMs that the server.
- 3:24 PM Ticket #350 (Switch to another user functionality) updated by
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Milestone changed
- 3:23 PM Ticket #349 (Callback for events to plugins) updated by
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Milestone changed
- 3:22 PM Ticket #348 (Take ownership of items) updated by
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Milestone changed
- 3:21 PM Ticket #347 (Give administrators access to other users trashcans) updated by
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Milestone changed
- 3:21 PM Ticket #346 (If an item is used, get information about the items that are using it) updated by
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Milestone changed
- 3:21 PM Ticket #345 (List all items owned by a user) updated by
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Milestone changed
- 3:21 PM Ticket #344 (Display extra values in data tables and other places) updated by
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Milestone changed
- 3:20 PM Ticket #343 (Plot tool should be able to use other annotations than bioassay) updated by
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Milestone changed
- 3:20 PM Ticket #342 (Plot tool should be able to use extra values) updated by
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Milestone changed
- 3:19 PM Ticket #340 (Experiment validation tool) updated by
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Milestone changed
- 3:18 PM Ticket #339 (Protocol parameters) updated by
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Milestone changed
- 3:17 PM Ticket #337 (Tab2Mage export plugin) updated by
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Milestone changed
- 3:17 PM Ticket #336 (Install common file formats with main installation) updated by
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Milestone changed
- 3:16 PM Ticket #335 (Plugins for importing/exporting plugin configurations) updated by
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Milestone changed
- 3:16 PM Ticket #334 (Project default items) updated by
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Milestone changed
- 3:15 PM Ticket #333 (Administrator documentation) updated by
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Milestone changed
- 3:14 PM Ticket #332 (Fix bugs in migration program) updated by
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Milestone changed
- 3:10 PM Ticket #326 (Mass annotation plug-in) updated by
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Version, Milestone changed
- 3:09 PM Ticket #318 (Plugin configuration values are not stored for a job) updated by
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Version, Milestone changed
- 3:08 PM Ticket #317 (Display and enter dates in different formats) updated by
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Version, Milestone changed
- 3:07 PM Ticket #316 (Add support for color coding in data tables) updated by
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Version, Milestone changed
- 3:07 PM Ticket #313 (Error handling in import plugins) updated by
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Milestone changed
- 3:07 PM Ticket #312 (ReporterType import) updated by
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Milestone changed
- 3:06 PM Ticket #311 (Allow parsing of numbers with different locale settings) updated by
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Version, Milestone changed
- 3:05 PM Ticket #308 (Firefox unresponsive script warning when uploading files) closed by
- worksforme
- 3:04 PM Ticket #301 (Better GUI for defining file formats) updated by
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Milestone, Version changed
- 3:04 PM Ticket #298 (Add administrator page for viewing disk usage statistics) updated by
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Version, Milestone changed
- 3:04 PM Ticket #295 (Filter on selected bioassays) updated by
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Milestone changed
- 3:04 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
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Milestone changed
- 3:03 PM Ticket #293 (allow queuing of uploads) updated by
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Version, Milestone changed
- 3:01 PM Ticket #262 (Overview of an experiment) updated by
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Version, Milestone changed
- 3:00 PM Ticket #257 (Fix the Jep.nodeToExpression method) updated by
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Version, Milestone changed
- 3:00 PM Ticket #252 (Make the trashcan smarter when deleting items) updated by
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Version, Milestone changed
- 2:59 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by
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Milestone changed
- 2:57 PM Ticket #220 (Plugin permissions) updated by
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Milestone changed
- 2:55 PM Ticket #212 (Array slide import plugin) updated by
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Milestone, Version changed
- 2:52 PM Ticket #201 (Experiment directory) updated by
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Milestone changed
- 2:51 PM Ticket #189 (Allow export plugins to send download immediately to client) updated by
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Milestone changed
- 2:51 PM Ticket #172 (Add externalId property to annotation type) updated by
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Milestone changed
- 2:50 PM Ticket #169 (Use formulas for creating extra values) updated by
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Milestone changed
- 2:50 PM Ticket #153 (More progress from importer plug-ins) updated by
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Milestone changed
- 2:49 PM Ticket #146 (Add help text to the web gui) updated by
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Milestone changed
- 2:49 PM Ticket #140 (Write documentation: 5e) Secondary file storage) updated by
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Milestone changed
- 2:49 PM Ticket #138 (Write documentation: 5c) Authentication plug-ins) updated by
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Milestone changed
- 2:48 PM Ticket #108 (Logging the change history of an item) updated by
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Milestone changed
- 2:46 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
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Milestone changed
- 2:05 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
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Milestone changed
- 1:56 PM Changeset [2600] by
- Updated About and exception dialog with jdbc driver version, java …
- 1:06 PM Ticket #350 (Switch to another user functionality) created by
- For users with the "Act as another user" permission it should be …
- 1:04 PM Changeset [2599] by
- Delete, Restore, Share and Export buttons now works in popup windows …
- 12:58 PM Ticket #349 (Callback for events to plugins) created by
- Make it possible to catch onChange event for plugin parameters and …
- 11:44 AM Ticket #347 (Give administrators access to other users trashcans) updated by
- When the root user deletes an item owner by another user, it ends up …
- 11:42 AM Ticket #348 (Take ownership of items) created by
- Implement interface for taking the ownership of an item, given that …
- 11:40 AM Ticket #347 (Give administrators access to other users trashcans) created by
- 11:39 AM Ticket #346 (If an item is used, get information about the items that are using it) created by
- A used item can't be deleted and it is annoying to not know what is …
- 11:37 AM Ticket #345 (List all items owned by a user) created by
- 11:18 AM Ticket #344 (Display extra values in data tables and other places) created by
- In the current implementation it is not possible to display extra …
- 11:15 AM Ticket #343 (Plot tool should be able to use other annotations than bioassay) created by
- In the current implementation you can only annotate the plots with the …
- 11:13 AM Ticket #342 (Plot tool should be able to use extra values) created by
- The current implementation cannot plot extra values.
- 10:57 AM Ticket #341 (Raw data type conversion plugin) created by
- Develop one or more plugins that can convert raw data of one type to …
- 10:56 AM Ticket #262 (Overview of an experiment) updated by
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Description, Milestone changed
- 10:55 AM Ticket #340 (Experiment validation tool) created by
- The core is very loose when it comes to checking the structure of …
- 10:50 AM Ticket #339 (Protocol parameters) created by
- Make it possible to specify parameters for a protocol. Then, when that …
- 10:49 AM Ticket #338 (Tab2Mage import plugin) created by
- Create a plugin that can import Tab2Mage files.
- 10:48 AM Ticket #337 (Tab2Mage export plugin) created by
- Create a plugin that can export an experiment in Tab2Mage format
- 10:47 AM Ticket #336 (Install common file formats with main installation) created by
- Plugin configurations for some common file formats could probably be …
- 10:46 AM Ticket #335 (Plugins for importing/exporting plugin configurations) created by
- Configuring a plugin is a tedious task that sometimes requires …
- 10:44 AM Ticket #334 (Project default items) created by
- Make is possible to specify default items (protocols, scanner, …
- 10:42 AM Ticket #333 (Administrator documentation) created by
- Write documentation for the Base 2 server administrator. Base 2 has a …
- 10:37 AM Ticket #300 (Fields in Properties display mis-aligned) closed by
- fixed: Has probably been fixed by one of the style sheet changes some time ago.
- 9:09 AM Ticket #332 (Fix bugs in migration program) created by
- The migration tool is not stable if it encounters a Base 1 …
- 9:04 AM Ticket #331 (Remember the last used item when creating new items) closed by
- fixed: (In [2598]) Fixes #331: Remember the last used item when creating new items
- 9:04 AM Changeset [2598] by
- Fixes #331: Remember the last used item when creating new items
Aug 25, 2006:
- 4:07 PM Ticket #331 (Remember the last used item when creating new items) updated by
- (In [2597]) References #331: Remember the last used item when creating …
- 4:07 PM Changeset [2597] by
- References #331: Remember the last used item when creating new items …
- 1:15 PM Ticket #331 (Remember the last used item when creating new items) updated by
- (In [2596]) References #331: Remember the last used item when creating …
- 1:15 PM Changeset [2596] by
- References #331: Remember the last used item when creating new items …
- 12:45 PM Changeset [2595] by
Aug 24, 2006:
- 4:33 PM Changeset [2594] by
- Correct column names in plot types table, chapter 6, §7
- 4:24 PM Changeset [2593] by
- Added a missing configuration value for the Raw data importer in the …
- 3:55 PM Ticket #331 (Remember the last used item when creating new items) updated by
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Status, Owner, Milestone changed
- 3:47 PM Changeset [2592] by
- Made toolbar visible in popupwindows.
- 3:42 PM Changeset [2591] by
- :Merged trunk changes r2577:2590 into dominic_annotations
- 2:04 PM Changeset [2590] by
- Create hybridzations from multiple labeled extracts
- 1:01 PM Changeset [2589] by
- Fixed incorrect link when write permission is missing.
- 12:54 PM Ticket #330 (Make it possible to inherit annotations for new items) closed by
- fixed: (In [2588]) Fixes #330: Make it possible to inherit annotations for …
- 12:54 PM Changeset [2588] by
- Fixes #330: Make it possible to inherit annotations for new items
- 12:53 PM Changeset [2587] by
- Plates now save the annotations
- 12:52 PM Changeset [2586] by
- Get all annotatable parents
- 10:47 AM Changeset [2585] by
- the category column removed
- 9:58 AM Changeset [2584] by
- References #330: Make it possible to inherit annotations for new items …
- 9:58 AM Ticket #330 (Make it possible to inherit annotations for new items) updated by
- (In [2584]) References #330: Make it possible to inherit annotations …
- 9:20 AM Changeset [2583] by
- Updated documentation about where to find test data
- 9:06 AM Changeset [2582] by
- 8:49 AM Changeset [2581] by
- Replaced fixed array with map. Use printStackTrace() method to always …
- 7:57 AM Changeset [2580] by
- Changed yellow icon background to grey
Aug 23, 2006:
- 4:10 PM DeveloperInformation edited by
- Added test data repo. (diff)
- 3:47 PM Ticket #330 (Make it possible to inherit annotations for new items) updated by
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Milestone, Status changed
- 3:27 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) closed by
- fixed: (In [2579]) Fixes #329: Auto-focus on input field when selecting …
- 3:27 PM Changeset [2579] by
- Fixes #329: Auto-focus on input field when selecting annotation or …
- 3:20 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) updated by
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Status changed
- 2:13 PM Ticket #331 (Remember the last used item when creating new items) created by
- For example, when you create a new Raw bioassay you may select "Scan", …
- 1:57 PM Ticket #330 (Make it possible to inherit annotations for new items) created by
- The current implemenation requires that the item is saved before it …
- 1:32 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) created by
- When you click on a plugin parameter or annotation in the left list an …
- 12:49 PM Changeset [2578] by
- :Fixed compilation errors after merge
- 12:34 PM Changeset [2577] by
- :Merged trunk changes r2343:2576 into dominic_annotations
- 10:51 AM Changeset [2576] by
- Test formulas before experiments since formulas are used in the …
- 10:36 AM Changeset [2575] by
- Copy function for plugin configurations now copy the parameters also.
- 8:58 AM Changeset [2574] by
- Don't show "Configure plugin" action if the logged in user doesn't …
- 8:54 AM Changeset [2573] by
- Fixes #328: Enable clicks on the enumeration option when annotating …
- 8:54 AM Ticket #328 (Enable clicks on the enumeration option when annotating items) closed by
- fixed: (In [2573]) Fixes #328: Enable clicks on the enumeration option when …
Aug 22, 2006:
- 3:39 PM Ticket #328 (Enable clicks on the enumeration option when annotating items) updated by
-
Status changed
- 2:52 PM Ticket #327 (Not all users are listed as members in a group) closed by
- fixed: (In [2572]) Fixes #327: Not all users are listed as members in a group
- 2:52 PM Changeset [2572] by
- Fixes #327: Not all users are listed as members in a group
- 2:48 PM Ticket #327 (Not all users are listed as members in a group) updated by
-
Status changed
- 2:41 PM Changeset [2571] by
- Original quantities are empty by default. Event dates default to …
- 2:40 PM Changeset [2570] by
- Removed list of labeled extracts from labels view since it is …
- 2:35 PM Changeset [2569] by
- Use dye-swap labeled extracts for dye-swap hybridizations
- 2:22 PM Tickets #221,222 batch updated by
- (In [2568]) Fixes #221: Create enhanced test procedure. References …
- 2:22 PM Changeset [2568] by
- Fixes #221: Create enhanced test procedure. References #222: Automated …
- 1:42 PM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) closed by
- fixed: (In [2567]) Fixes #259: A job's progress doesn't get upadated when a …
- 1:42 PM Changeset [2567] by
- Fixes #259: A job's progress doesn't get upadated when a job is …
- 1:41 PM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) updated by
-
Status, Milestone changed
- 1:13 PM Changeset [2566] by
- Fixed an unhandled exception when trying to read the quantity of an …
- 1:10 PM Changeset [2565] by
- Pad plate names with 0 instead of space since Postgres ignores spaces …
- 1:08 PM Changeset [2564] by
- Added Application.start(boolean) method that allows an application to …
- 12:59 PM Changeset [2563] by
- Break after ten iterations to avoid endless loops
- 11:06 AM Changeset [2562] by
- Fixed an unhandled exception when trying to read the quantity of an …
- 10:43 AM Changeset [2561] by
- Made some optimizations to the Lowess normalization. Arrays get a size …
- 8:49 AM Changeset [2560] by
- Removed duplicated formulas
- 8:46 AM Changeset [2559] by
- Dates are now shown with time information as well
- 8:42 AM Changeset [2558] by
- No publication date by default
Aug 21, 2006:
- 3:04 PM Changeset [2557] by
- Fixes #325 Corrupt page when viewing an biomaterial event
- 3:04 PM Ticket #325 (Corrupt page when viewing an biomaterial event) closed by
- fixed: (In [2557]) Fixes #325 Corrupt page when viewing an biomaterial event
- 2:43 PM Changeset [2556] by
- Display label of each labeled extract
- 2:26 PM Ticket #328 (Enable clicks on the enumeration option when annotating items) created by
- When the web interface displays radio buttons or checkboxes for …
- 2:13 PM Changeset [2555] by
- Fixed ArrayDesignPlate.getQuery() method to create a query that …
- 1:44 PM Changeset [2554] by
- Fixed incorrect message when no plates are connected with an array design.
- 1:43 PM Changeset [2553] by
- Removed "New plate" functionality since plates are usually imported …
- 1:41 PM Changeset [2552] by
- Display times with seconds.
- 1:05 PM Ticket #327 (Not all users are listed as members in a group) created by
- Users that have been assigned a quota group are not listed as members …
- 12:14 PM Ticket #326 (Mass annotation plug-in) created by
- There should be a plugin for doing anotation of item from a file. The …
Aug 18, 2006:
- 5:51 PM Changeset [2551] by
- corrected a nullpointer in the reader
- 5:43 PM Changeset [2550] by
- made some major design changes looks a little bit better now
- 4:33 PM Changeset [2549] by
- Creat a copy of an existing plugin configuration is added to the web-gui.
Aug 17, 2006:
- 3:43 PM Ticket #222 (Automated test program suite for enhanced test procedure) closed by
- fixed: (In [2548]) Fixes #222: Automated test program suite for enhanced test …
- 3:43 PM Changeset [2548] by
- Fixes #222: Automated test program suite for enhanced test procedure
- 2:26 PM Ticket #264 (Base1 plug-in executer enhancements) updated by
- Annotations are now exported
- 2:23 PM Changeset [2547] by
- exports annotations
- 2:23 PM Changeset [2546] by
- made getIdFromPath public
- 11:49 AM Changeset [2545] by
- Now handles the case with a null reporter correctly
- 11:48 AM Changeset [2544] by
- Fixed index problem when linking to plates/wells (use 0-based instead …
- 11:47 AM Changeset [2543] by
- Let superclass handle error reporting
- 11:47 AM Changeset [2542] by
- Fixed equals() method to behave as documented
- 11:45 AM Changeset [2541] by
- Better error reportering which include line number in most error messages
- 11:44 AM Changeset [2540] by
- Added line number info to FlatFileParser.Line object
- 11:09 AM Changeset [2539] by
- * FlatFileParse now ignores comment lines within the data section. * …
- 11:08 AM Changeset [2538] by
- Fixed bad link on Run plugin button
- 10:53 AM Ticket #325 (Corrupt page when viewing an biomaterial event) updated by
-
Status changed
- 10:39 AM Changeset [2537] by
- Fixes #324: Filter feature on block results in error message
- 10:39 AM Ticket #324 (Filter feature on block results in error message) closed by
- fixed: (In [2537]) Fixes #324: Filter feature on block results in error message
- 9:13 AM Ticket #325 (Corrupt page when viewing an biomaterial event) created by
- Logg in with user permissions. View a sample that's shared to you. Go …
Aug 16, 2006:
- 4:02 PM Ticket #324 (Filter feature on block results in error message) created by
- could not resolve property: block of: …
- 12:05 PM Changeset [2536] by
- Fixes #197: Submenu onClick
- 12:05 PM Ticket #197 (Submenu onClick) closed by
- fixed: (In [2536]) Fixes #197: Submenu onClick
- 12:04 PM Ticket #197 (Submenu onClick) updated by
-
Milestone changed
- 11:49 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) closed by
- fixed: (In [2535]) Fixes #319: Spot images shown in experiment explorer do …
- 11:49 AM Changeset [2535] by
- Fixes #319: Spot images shown in experiment explorer do not seem to …
- 11:05 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) updated by
-
Status changed
- 11:01 AM Changeset [2534] by
- Fixes problem with disappearing buttons and page width in Plot tool.
- 9:46 AM Changeset [2533] by
- Fixes #323 Corrupt link in Samples->'The sample'->Event
- 9:46 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) closed by
- fixed: (In [2533]) Fixes #323 Corrupt link in Samples->'The sample'->Event
- 9:27 AM Changeset [2532] by
- Fixed link to bioassayset tools when viewing a transformation.
- 9:15 AM Changeset [2531] by
- Experiment explorer can now handle the case with zero matching reporters
- 9:04 AM Changeset [2530] by
- Added caching for AnnotationTypeCategoryData as specified
- 9:03 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) updated by
-
Status changed
- 9:03 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) created by
- Logged in as a normal user. Link to protocol on view_event_page. …
- 9:02 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) closed by
- fixed: (In [2529]) Fixes #131: Write documentation 4a) Schematic overview of BASE
- 9:02 AM Changeset [2529] by
- Fixes #131: Write documentation 4a) Schematic overview of BASE
- 9:02 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by
-
Summary changed
Aug 15, 2006:
- 10:19 PM Ticket #322 (Wrong message when not all item could be restored) closed by
- fixed: (In [2528]) Fixes #322 Wrong message when not all item could be restored
- 10:19 PM Changeset [2528] by
- Fixes #322 Wrong message when not all item could be restored
- 4:49 PM Changeset [2527] by
- missed a null check
- 4:35 PM Ticket #305 (delete recusively) closed by
- fixed: (In [2526]) Fixes #305 Delete recursively. Implemented for …
- 4:35 PM Changeset [2526] by
- Fixes #305 Delete recursively. Implemented for Directories, …
- 4:12 PM Ticket #322 (Wrong message when not all item could be restored) created by
- If the user doesn't have permission to restore an item the dialog …
- 3:47 PM Changeset [2525] by
- References #131: Write documentation 3a) Schematic overview of BASE …
- 3:47 PM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by
- (In [2525]) References #131: Write documentation 3a) Schematic …
- 3:41 PM Changeset [2524] by
- Compile JSP pages with more memeory since we got an OutOfMemoryError …
- 3:40 PM Ticket #321 (Error on filter page: NoSuchMethod) closed by
- fixed: (In [2523]) Fixes #321: Error on filter page: NoSuchMethod And two …
- 3:40 PM Changeset [2523] by
- Fixes #321: Error on filter page: NoSuchMethod And two other …
- 2:52 PM Ticket #321 (Error on filter page: NoSuchMethod) created by
- When I try the ' java.lang.NoSuchMethodError on page …
- 1:17 PM Ticket #320 (Nullpointer in experiment explorer) closed by
- fixed: (In [2522]) Fixes #320
- 1:17 PM Changeset [2522] by
- Fixes #320
- 1:07 PM Ticket #320 (Nullpointer in experiment explorer) updated by
-
Owner, Component changed
- 12:04 PM Ticket #320 (Nullpointer in experiment explorer) created by
- When choosing annotation. Base version 2.0 (build #2517; schema …
- 11:21 AM Changeset [2521] by
- supports annotation parameter
- 8:39 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by
-
Status changed
- 8:32 AM Changeset [2520] by
- Updated documentation that contained errors or wasn't up to date with …
Aug 14, 2006:
- 4:22 PM Changeset [2519] by
- will remove stdin/stdout if specified by config
- 2:30 PM Changeset [2518] by
- Fixes #170: Categorize annotation types
- 2:30 PM Ticket #170 (Categorize annotation types) closed by
- fixed: (In [2518]) Fixes #170: Categorize annotation types
- 12:07 PM Changeset [2517] by
- References #170: Install now sets correct permissions for categories
- 11:52 AM Changeset [2516] by
- References #170: Categorize annotation types Updated UML diagram
- 11:50 AM Changeset [2515] by
- References #170: Categorize annotation types Most of the core and web …
- 8:05 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) updated by
-
Owner, Milestone changed
There are some info that doesn't make sense to average. Spot images is …
Aug 12, 2006:
- 11:38 PM Ticket #10 (Analysis: Hierarchical clustering) updated by
-
Owner, Status changed
- 11:37 PM Ticket #150 (Affymetrix support) closed by
- fixed: * The resulting expression matrix is still not available as a file and …
- 11:33 PM DownloadPage edited by
- New packaged release (revision 2514). (diff)
- 12:18 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) created by
- When viewing avg of spots in experiment explorer under reporter view, …
Aug 11, 2006:
- 2:15 PM Ticket #127 (Experiment explorer) closed by
- fixed: (In [2514]) Fixes #127: Experiment explorer
- 2:15 PM Changeset [2514] by
- Fixes #127: Experiment explorer
- 8:15 AM Changeset [2513] by
- Do not show message about configurations for non-configurable plugins. …
Aug 10, 2006:
- 1:15 PM Ticket #305 (delete recusively) updated by
-
Status changed
- 12:18 PM Ticket #318 (Plugin configuration values are not stored for a job) created by
- Consider the following case: A user selects a plugin and …
- 12:08 PM Ticket #305 (delete recusively) updated by
-
Milestone, Owner changed
- 12:07 PM Ticket #217 (Delete entire directory structure) closed by
- duplicate: Is part of #305: delete recusively
- 11:54 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) closed by
- fixed: (In [2512]) Fixes #302: Running a plugin without a configuration …
- 11:54 AM Changeset [2512] by
- Fixes #302: Running a plugin without a configuration should not be possible
- 9:36 AM Ticket #39 (Handling a string with only blank space in required fields) closed by
- fixed: (In [2511]) Fixes #39 Handling a string with only blank space in …
- 9:36 AM Changeset [2511] by
- Fixes #39 Handling a string with only blank space in required fields. …
- 8:17 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by
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Status changed
- 8:16 AM Changeset [2510] by
- Fixes #306: empty trashcan
- 8:16 AM Ticket #306 (empty trashcan) closed by
- fixed: (In [2510]) Fixes #306: empty trashcan
Aug 9, 2006:
- 4:53 PM Ticket #39 (Handling a string with only blank space in required fields) updated by
- (In [2509]) References #39 Handling a string with only blank space in …
- 4:53 PM Changeset [2509] by
- References #39 Handling a string with only blank space in required …
- 4:15 PM Ticket #39 (Handling a string with only blank space in required fields) updated by
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Status, Owner changed
- 3:54 PM Ticket #306 (empty trashcan) updated by
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Status, Milestone changed
- 3:48 PM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by
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Milestone changed
- 3:30 PM Ticket #317 (Display and enter dates in different formats) updated by
- The new format should also include time if possible.
- 2:59 PM Changeset [2508] by
- Fixes #315 Ctrl + clicking on the name of an images - opens two edit …
- 2:59 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) closed by
- fixed: (In [2508]) Fixes #315 Ctrl + clicking on the name of an images - …
- 2:54 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) updated by
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Status changed
- 2:46 PM Ticket #317 (Display and enter dates in different formats) created by
- Add support in the web client for displaying and entering dates in …
- 2:45 PM Ticket #316 (Add support for color coding in data tables) created by
- Base1 has a nice feature where ratios are displayed with a colored …
- 2:40 PM Ticket #313 (Error handling in import plugins) updated by
- Maybe this should be configurable at the job level. Ie. the user could …
- 2:35 PM Ticket #266 (Strange mouse-over message in some places) closed by
- fixed: (In [2507]) Fixes #266 Strange mouse-over message in some places. view …
- 2:35 PM Changeset [2507] by
- Fixes #266 Strange mouse-over message in some places. view pages updated.
- 2:33 PM Ticket #170 (Categorize annotation types) updated by
- (In [2506]) References #170: Categorize annotation types Updated UML …
- 2:33 PM Changeset [2506] by
- References #170: Categorize annotation types Updated UML diagram
- 2:12 PM Ticket #170 (Categorize annotation types) updated by
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Status changed
- 2:10 PM Changeset [2505] by
- plugin parameters removed only job parameters
- 1:37 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) created by
- 1:33 PM Changeset [2504] by
- Fixed problem with execution time estimation.
- 1:20 PM Ticket #266 (Strange mouse-over message in some places) updated by
- (In [2503]) References #266 Strange mouse-over message in some places. …
- 1:20 PM Changeset [2503] by
- References #266 Strange mouse-over message in some places. file-, …
- 1:03 PM Ticket #127 (Experiment explorer) updated by
- (In [2502]) References #127: Experiment explorer Cleaned up and …
- 1:03 PM Changeset [2502] by
- References #127: Experiment explorer Cleaned up and documented most …
- 11:17 AM Ticket #266 (Strange mouse-over message in some places) updated by
- (In [2501]) References #266 Strange mouse-over message in some places. …
- 11:17 AM Changeset [2501] by
- References #266 Strange mouse-over message in some places. …
- 10:36 AM Changeset [2500] by
- References # 266 Strange mouse-over message in some places. …
Aug 8, 2006:
- 4:09 PM Changeset [2499] by
- Fixed problem with the new update method.
- 4:01 PM Ticket #314 (Update documentation that shows code examples with ...) closed by
- fixed: (In [2498]) Fixes #314: Update documentation that shows code examples …
- 4:01 PM Changeset [2498] by
- Fixes #314: Update documentation that shows code examples with …
- 3:58 PM Ticket #266 (Strange mouse-over message in some places) updated by
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Status changed
- 3:58 PM Ticket #266 (Strange mouse-over message in some places) updated by
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Owner changed
- 3:49 PM Ticket #314 (Update documentation that shows code examples with ...) updated by
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Status changed
- 3:43 PM Changeset [2497] by
- Better performance when creating a root bioassayset by fetching the …
- 2:55 PM Changeset [2496] by
- Deleted obsolete files related to the removed AffyFeatureData class.
- 2:52 PM Ticket #173 (Attach Hardware/Software to more items) closed by
- fixed: (In [2495]) Fixes #173 Fully functional to create/delete HardwareType …
- 2:52 PM Changeset [2495] by
- Fixes #173 Fully functional to create/delete HardwareType and attach …
- 1:35 PM Ticket #314 (Update documentation that shows code examples with ...) created by
- The Transformation.newProduct() method changed because of ticket #196. …
- 1:20 PM Changeset [2494] by
- * Fixed problem with FlatFileParser skipping every other section. * …
- 1:13 PM Changeset [2493] by
- gui changes and removal of default categories in install.java
- 12:57 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) closed by
- fixed: (In [2492]) Fixes #196: Transformation.newProduct should create child …
- 12:57 PM Changeset [2492] by
- Fixes #196: Transformation.newProduct should create child BioAssays if …
- 11:36 AM DownloadPage edited by
- Updated demo server to revision 2491 (diff)
- 11:14 AM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) updated by
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Status changed
- 9:51 AM Changeset [2491] by
- Fixes #168: Use formulas in table listings of bioassay data
- 9:51 AM Ticket #168 (Use formulas in table listings of bioassay data) closed by
- fixed: (In [2491]) Fixes #168: Use formulas in table listings of bioassay data
- 9:31 AM Ticket #127 (Experiment explorer) updated by
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Priority changed
- 9:30 AM Ticket #168 (Use formulas in table listings of bioassay data) updated by
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Priority, Status changed
- 9:29 AM Ticket #127 (Experiment explorer) updated by
- (In [2490]) References #127: Experiment explorer * Added …
- 9:29 AM Changeset [2490] by
- References #127: Experiment explorer * Added annotations, support …
Aug 7, 2006:
- 3:49 PM Changeset [2489] by
- Added PostgreSQL setup information.
- 2:36 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by
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Milestone changed
- 2:32 PM Ticket #189 (Allow export plugins to send download immediately to client) updated by
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Milestone changed
- 2:31 PM Ticket #169 (Use formulas for creating extra values) updated by
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Milestone changed
- 2:26 PM Ticket #172 (Add externalId property to annotation type) updated by
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Milestone changed
- 2:25 PM Ticket #108 (Logging the change history of an item) updated by
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Milestone changed
- 12:13 PM Changeset [2488] by
- Fixed sorting problem with always visible columns
Aug 4, 2006:
- 2:33 PM Ticket #127 (Experiment explorer) updated by
- (In [2487]) References #127: Experiment explorer First version. A lot …
- 2:33 PM Changeset [2487] by
- References #127: Experiment explorer First version. A lot of the code …
- 2:15 PM Ticket #313 (Error handling in import plugins) created by
- The reporter importer (and pobably others) fails when there is to long …
- 1:54 PM Ticket #312 (ReporterType import) created by
- ReporterFlatFileImporter assumes that every reporter in the file has …
Aug 3, 2006:
- 5:20 PM Ticket #173 (Attach Hardware/Software to more items) updated by
- (In [2486]) References #173. Possible to attach a hardware to a …
- 5:20 PM Changeset [2486] by
- References #173. Possible to attach a hardware to a PlateEvent in the GUI
- 1:03 PM Changeset [2485] by
- Position batcher added
- 10:48 AM Ticket #311 (Allow parsing of numbers with different locale settings) created by
- The problem can arise in the FlatFileParser and it's different Mapper …
- 8:41 AM Changeset [2484] by
- Refrences #173 A hardware can now be attach to a Hybridization in the GUI.
- 8:35 AM Ticket #309 (count spots in bioassayset) closed by
- fixed: (In [2483]) Fixes #309: count spots in bioassayset
- 8:35 AM Changeset [2483] by
- Fixes #309: count spots in bioassayset
- 8:35 AM Ticket #309 (count spots in bioassayset) updated by
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Milestone, Status changed
- 7:59 AM Changeset [2482] by
- Fixes #310: Permission denied on raw bioassay
- 7:59 AM Ticket #310 (Permission denied on raw bioassay) closed by
- fixed: (In [2482]) Fixes #310: Permission denied on raw bioassay
- 7:58 AM Ticket #310 (Permission denied on raw bioassay) updated by
-
Status, Milestone changed
Aug 2, 2006:
- 4:23 PM Ticket #264 (Base1 plug-in executer enhancements) updated by
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Status changed
Can now import data and create new bioassays - 2:39 PM Ticket #310 (Permission denied on raw bioassay) created by
- I get a permission denied when clicking on a raw bioassay. The owned …
- 1:59 PM Changeset [2481] by
- Base1PluginExecuter can now export data to base1 plug-in and import from it
- 12:57 PM Ticket #309 (count spots in bioassayset) created by
- If a BioAssaySet only has spot data the spot count is wrong.
- 11:21 AM Changeset [2480] by
- Updated db schema_version and correct comments in BioMaterialEvent and …
- 9:40 AM Changeset [2479] by
- References #173 Made it possible to attach a Hardware item to …
- 9:40 AM Ticket #173 (Attach Hardware/Software to more items) updated by
- (In [2479]) References #173 Made it possible to attach a Hardware item …
- 9:11 AM Changeset [2478] by
- Fixed a corrupt link
- 8:15 AM Ticket #307 (display of annotation type to users from administrate page) closed by
- invalid: In the view/presets dropdown one has to select the 'Shared to me' …
- 8:09 AM Ticket #308 (Firefox unresponsive script warning when uploading files) updated by
- I can not reproduce this with Firefox version 1.5.0.3 on Linux. I …
Aug 1, 2006:
- 8:46 PM Ticket #307 (display of annotation type to users from administrate page) updated by
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Milestone changed
- 8:46 PM Ticket #308 (Firefox unresponsive script warning when uploading files) updated by
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Milestone, Component changed
- 7:19 PM Ticket #308 (Firefox unresponsive script warning when uploading files) created by
- When uploading affymetrix .CEL files, upload process occurs in …
- 4:13 PM Ticket #307 (display of annotation type to users from administrate page) created by
- I have noted the following: When creating a new user and setting the …
- 2:16 PM Changeset [2477] by
- Created an association between BiomaterialEventData-HardwareData and …
- 1:43 PM Ticket #306 (empty trashcan) created by
- When you want to empty the trashcan you have to mark every item (max …
- 1:39 PM Ticket #305 (delete recusively) created by
- When items are presented in a tree view (the analyse tree and the file …
- 8:34 AM Ticket #173 (Attach Hardware/Software to more items) updated by
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Status changed
- 8:26 AM Ticket #127 (Experiment explorer) updated by
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Status changed
- 8:13 AM Changeset [2476] by
- Fixes #304 An empty list page is viewed when changing the …
- 8:13 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) closed by
- fixed: (In [2476]) Fixes #304 An empty list page is viewed when changing the …
Jul 31, 2006:
- 5:59 PM Changeset [2475] by
- Fixed issues from feedbacks: code comments and patterns, standards …
- 3:53 PM Ticket #263 (Update to latest versions of 3rd-party software) closed by
- fixed: (In [2474]) Fixes #263: Update to latest versions of 3rd-party …
- 3:52 PM Changeset [2474] by
- Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
- 11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) updated by
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Status changed
- 11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) created by
- Precondition: Viewing items that's "Owned by me" and "Shared to me" …
- 9:12 AM Ticket #263 (Update to latest versions of 3rd-party software) updated by
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Status changed
- 9:11 AM Ticket #303 (News items are not shown in View -> home page) updated by
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Milestone changed
- 9:11 AM Ticket #303 (News items are not shown in View -> home page) closed by
- fixed: (In [2473]) Fixes #303: News items are not shown in View -> home page …
- 9:11 AM Changeset [2473] by
- Fixes #303: News items are not shown in View -> home page Needed a …
- 9:03 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by
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Owner, Component, Milestone changed
Some plugins doesn't require a configuration. For example the existing … - 8:43 AM Changeset [2472] by
- Added pool button for samples, extracts and labeledextracts.
Note:
See TracTimeline
for information about the timeline view.
