Timeline



Aug 24, 2006:

4:33 PM Changeset [2594] by Martin Svensson
Correct column names in plot types table, chapter 6, §7
4:24 PM Changeset [2593] by Martin Svensson
Added a missing configuration value for the Raw data importer in the …
3:55 PM Ticket #331 (Remember the last used item when creating new items) updated by Nicklas Nordborg
Status, Owner, Milestone changed
3:47 PM Changeset [2592] by Martin Svensson
Made toolbar visible in popupwindows.
3:42 PM Changeset [2591] by Nicklas Nordborg
:Merged trunk changes r2577:2590 into dominic_annotations
2:04 PM Changeset [2590] by Nicklas Nordborg
Create hybridzations from multiple labeled extracts
1:01 PM Changeset [2589] by Nicklas Nordborg
Fixed incorrect link when write permission is missing.
12:54 PM Ticket #330 (Make it possible to inherit annotations for new items) closed by Nicklas Nordborg
fixed: (In [2588]) Fixes #330: Make it possible to inherit annotations for …
12:54 PM Changeset [2588] by Nicklas Nordborg
Fixes #330: Make it possible to inherit annotations for new items
12:53 PM Changeset [2587] by Nicklas Nordborg
Plates now save the annotations
12:52 PM Changeset [2586] by Nicklas Nordborg
Get all annotatable parents
10:47 AM Changeset [2585] by dominic
the category column removed
9:58 AM Changeset [2584] by Nicklas Nordborg
References #330: Make it possible to inherit annotations for new items …
9:58 AM Ticket #330 (Make it possible to inherit annotations for new items) updated by Nicklas Nordborg
(In [2584]) References #330: Make it possible to inherit annotations …
9:20 AM Changeset [2583] by Nicklas Nordborg
Updated documentation about where to find test data
9:06 AM Changeset [2582] by Nicklas Nordborg
8:49 AM Changeset [2581] by Nicklas Nordborg
Replaced fixed array with map. Use printStackTrace() method to always …
7:57 AM Changeset [2580] by Nicklas Nordborg
Changed yellow icon background to grey

Aug 23, 2006:

4:10 PM DeveloperInformation edited by Jari Häkkinen
Added test data repo. (diff)
3:47 PM Ticket #330 (Make it possible to inherit annotations for new items) updated by Nicklas Nordborg
Status, Milestone changed
3:27 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) closed by Nicklas Nordborg
fixed: (In [2579]) Fixes #329: Auto-focus on input field when selecting …
3:27 PM Changeset [2579] by Nicklas Nordborg
Fixes #329: Auto-focus on input field when selecting annotation or …
3:20 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) updated by Nicklas Nordborg
Status changed
2:13 PM Ticket #331 (Remember the last used item when creating new items) created by Nicklas Nordborg
For example, when you create a new Raw bioassay you may select "Scan", …
1:57 PM Ticket #330 (Make it possible to inherit annotations for new items) created by Nicklas Nordborg
The current implemenation requires that the item is saved before it …
1:32 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) created by Nicklas Nordborg
When you click on a plugin parameter or annotation in the left list an …
12:49 PM Changeset [2578] by Nicklas Nordborg
:Fixed compilation errors after merge
12:34 PM Changeset [2577] by Nicklas Nordborg
:Merged trunk changes r2343:2576 into dominic_annotations
10:51 AM Changeset [2576] by Nicklas Nordborg
Test formulas before experiments since formulas are used in the …
10:36 AM Changeset [2575] by Nicklas Nordborg
Copy function for plugin configurations now copy the parameters also.
8:58 AM Changeset [2574] by Nicklas Nordborg
Don't show "Configure plugin" action if the logged in user doesn't …
8:54 AM Changeset [2573] by Nicklas Nordborg
Fixes #328: Enable clicks on the enumeration option when annotating …
8:54 AM Ticket #328 (Enable clicks on the enumeration option when annotating items) closed by Nicklas Nordborg
fixed: (In [2573]) Fixes #328: Enable clicks on the enumeration option when …

Aug 22, 2006:

3:39 PM Ticket #328 (Enable clicks on the enumeration option when annotating items) updated by Nicklas Nordborg
Status changed
2:52 PM Ticket #327 (Not all users are listed as members in a group) closed by Nicklas Nordborg
fixed: (In [2572]) Fixes #327: Not all users are listed as members in a group
2:52 PM Changeset [2572] by Nicklas Nordborg
Fixes #327: Not all users are listed as members in a group
2:48 PM Ticket #327 (Not all users are listed as members in a group) updated by Nicklas Nordborg
Status changed
2:41 PM Changeset [2571] by Nicklas Nordborg
Original quantities are empty by default. Event dates default to …
2:40 PM Changeset [2570] by Nicklas Nordborg
Removed list of labeled extracts from labels view since it is …
2:35 PM Changeset [2569] by Nicklas Nordborg
Use dye-swap labeled extracts for dye-swap hybridizations
2:22 PM Tickets #221,​222 batch updated by Nicklas Nordborg
(In [2568]) Fixes #221: Create enhanced test procedure. References …
2:22 PM Changeset [2568] by Nicklas Nordborg
Fixes #221: Create enhanced test procedure. References #222: Automated …
1:42 PM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) closed by Nicklas Nordborg
fixed: (In [2567]) Fixes #259: A job's progress doesn't get upadated when a …
1:42 PM Changeset [2567] by Nicklas Nordborg
Fixes #259: A job's progress doesn't get upadated when a job is …
1:41 PM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) updated by Nicklas Nordborg
Milestone, Status changed
1:13 PM Changeset [2566] by Martin Svensson
Fixed an unhandled exception when trying to read the quantity of an …
1:10 PM Changeset [2565] by Nicklas Nordborg
Pad plate names with 0 instead of space since Postgres ignores spaces …
1:08 PM Changeset [2564] by Nicklas Nordborg
Added Application.start(boolean) method that allows an application to …
12:59 PM Changeset [2563] by Nicklas Nordborg
Break after ten iterations to avoid endless loops
11:06 AM Changeset [2562] by Martin Svensson
Fixed an unhandled exception when trying to read the quantity of an …
10:43 AM Changeset [2561] by Nicklas Nordborg
Made some optimizations to the Lowess normalization. Arrays get a size …
8:49 AM Changeset [2560] by Nicklas Nordborg
Removed duplicated formulas
8:46 AM Changeset [2559] by Nicklas Nordborg
Dates are now shown with time information as well
8:42 AM Changeset [2558] by Nicklas Nordborg
No publication date by default

Aug 21, 2006:

3:04 PM Changeset [2557] by Martin Svensson
Fixes #325 Corrupt page when viewing an biomaterial event
3:04 PM Ticket #325 (Corrupt page when viewing an biomaterial event) closed by Martin Svensson
fixed: (In [2557]) Fixes #325 Corrupt page when viewing an biomaterial event
2:43 PM Changeset [2556] by Nicklas Nordborg
Display label of each labeled extract
2:26 PM Ticket #328 (Enable clicks on the enumeration option when annotating items) created by Nicklas Nordborg
When the web interface displays radio buttons or checkboxes for …
2:13 PM Changeset [2555] by Nicklas Nordborg
Fixed ArrayDesignPlate.getQuery() method to create a query that …
1:44 PM Changeset [2554] by Nicklas Nordborg
Fixed incorrect message when no plates are connected with an array design.
1:43 PM Changeset [2553] by Nicklas Nordborg
Removed "New plate" functionality since plates are usually imported …
1:41 PM Changeset [2552] by Nicklas Nordborg
Display times with seconds.
1:05 PM Ticket #327 (Not all users are listed as members in a group) created by Nicklas Nordborg
Users that have been assigned a quota group are not listed as members …
12:14 PM Ticket #326 (Mass annotation plug-in) created by Johan Enell
There should be a plugin for doing anotation of item from a file. The …

Aug 18, 2006:

5:51 PM Changeset [2551] by Johan Enell
corrected a nullpointer in the reader
5:43 PM Changeset [2550] by Johan Enell
made some major design changes looks a little bit better now
4:33 PM Changeset [2549] by Martin Svensson
Creat a copy of an existing plugin configuration is added to the web-gui.

Aug 17, 2006:

3:43 PM Ticket #222 (Automated test program suite for enhanced test procedure) closed by Nicklas Nordborg
fixed: (In [2548]) Fixes #222: Automated test program suite for enhanced test …
3:43 PM Changeset [2548] by Nicklas Nordborg
Fixes #222: Automated test program suite for enhanced test procedure
2:26 PM Ticket #264 (Base1 plug-in executer enhancements) updated by Johan Enell
Annotations are now exported
2:23 PM Changeset [2547] by Johan Enell
exports annotations
2:23 PM Changeset [2546] by Johan Enell
made getIdFromPath public
11:49 AM Changeset [2545] by Nicklas Nordborg
Now handles the case with a null reporter correctly
11:48 AM Changeset [2544] by Nicklas Nordborg
Fixed index problem when linking to plates/wells (use 0-based instead …
11:47 AM Changeset [2543] by Nicklas Nordborg
Let superclass handle error reporting
11:47 AM Changeset [2542] by Nicklas Nordborg
Fixed equals() method to behave as documented
11:45 AM Changeset [2541] by Nicklas Nordborg
Better error reportering which include line number in most error messages
11:44 AM Changeset [2540] by Nicklas Nordborg
Added line number info to FlatFileParser.Line object
11:09 AM Changeset [2539] by Nicklas Nordborg
* FlatFileParse now ignores comment lines within the data section. * …
11:08 AM Changeset [2538] by Nicklas Nordborg
Fixed bad link on Run plugin button
10:53 AM Ticket #325 (Corrupt page when viewing an biomaterial event) updated by Martin Svensson
Status changed
10:39 AM Changeset [2537] by Nicklas Nordborg
Fixes #324: Filter feature on block results in error message
10:39 AM Ticket #324 (Filter feature on block results in error message) closed by Nicklas Nordborg
fixed: (In [2537]) Fixes #324: Filter feature on block results in error message
9:13 AM Ticket #325 (Corrupt page when viewing an biomaterial event) created by Martin Svensson
Logg in with user permissions. View a sample that's shared to you. Go …

Aug 16, 2006:

4:02 PM Ticket #324 (Filter feature on block results in error message) created by Nicklas Nordborg
could not resolve property: block of: …
12:05 PM Changeset [2536] by Nicklas Nordborg
Fixes #197: Submenu onClick
12:05 PM Ticket #197 (Submenu onClick) closed by Nicklas Nordborg
fixed: (In [2536]) Fixes #197: Submenu onClick
12:04 PM Ticket #197 (Submenu onClick) updated by Nicklas Nordborg
Milestone changed
11:49 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) closed by Nicklas Nordborg
fixed: (In [2535]) Fixes #319: Spot images shown in experiment explorer do …
11:49 AM Changeset [2535] by Nicklas Nordborg
Fixes #319: Spot images shown in experiment explorer do not seem to …
11:05 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) updated by Nicklas Nordborg
Status changed
11:01 AM Changeset [2534] by Nicklas Nordborg
Fixes problem with disappearing buttons and page width in Plot tool.
9:46 AM Changeset [2533] by Martin Svensson
Fixes #323 Corrupt link in Samples->'The sample'->Event
9:46 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) closed by Martin Svensson
fixed: (In [2533]) Fixes #323 Corrupt link in Samples->'The sample'->Event
9:27 AM Changeset [2532] by Nicklas Nordborg
Fixed link to bioassayset tools when viewing a transformation.
9:15 AM Changeset [2531] by Nicklas Nordborg
Experiment explorer can now handle the case with zero matching reporters
9:04 AM Changeset [2530] by Nicklas Nordborg
Added caching for AnnotationTypeCategoryData as specified
9:03 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) updated by Martin Svensson
Status changed
9:03 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) created by Martin Svensson
Logged in as a normal user. Link to protocol on view_event_page. …
9:02 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) closed by Nicklas Nordborg
fixed: (In [2529]) Fixes #131: Write documentation 4a) Schematic overview of BASE
9:02 AM Changeset [2529] by Nicklas Nordborg
Fixes #131: Write documentation 4a) Schematic overview of BASE
9:02 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by Nicklas Nordborg
Summary changed

Aug 15, 2006:

10:19 PM Ticket #322 (Wrong message when not all item could be restored) closed by Martin Svensson
fixed: (In [2528]) Fixes #322 Wrong message when not all item could be restored
10:19 PM Changeset [2528] by Martin Svensson
Fixes #322 Wrong message when not all item could be restored
4:49 PM Changeset [2527] by Johan Enell
missed a null check
4:35 PM Ticket #305 (delete recusively) closed by Martin Svensson
fixed: (In [2526]) Fixes #305 Delete recursively. Implemented for …
4:35 PM Changeset [2526] by Martin Svensson
Fixes #305 Delete recursively. Implemented for Directories, …
4:12 PM Ticket #322 (Wrong message when not all item could be restored) created by Martin Svensson
If the user doesn't have permission to restore an item the dialog …
3:47 PM Changeset [2525] by Nicklas Nordborg
References #131: Write documentation 3a) Schematic overview of BASE …
3:47 PM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by Nicklas Nordborg
(In [2525]) References #131: Write documentation 3a) Schematic …
3:41 PM Changeset [2524] by Nicklas Nordborg
Compile JSP pages with more memeory since we got an OutOfMemoryError
3:40 PM Ticket #321 (Error on filter page: NoSuchMethod) closed by Nicklas Nordborg
fixed: (In [2523]) Fixes #321: Error on filter page: NoSuchMethod And two …
3:40 PM Changeset [2523] by Nicklas Nordborg
Fixes #321: Error on filter page: NoSuchMethod And two other …
2:52 PM Ticket #321 (Error on filter page: NoSuchMethod) created by Johan Enell
When I try the ' java.lang.NoSuchMethodError on page …
1:17 PM Ticket #320 (Nullpointer in experiment explorer) closed by Johan Enell
fixed: (In [2522]) Fixes #320
1:17 PM Changeset [2522] by Johan Enell
Fixes #320
1:07 PM Ticket #320 (Nullpointer in experiment explorer) updated by Johan Enell
Component, Owner changed
12:04 PM Ticket #320 (Nullpointer in experiment explorer) created by Johan Enell
When choosing annotation. Base version 2.0 (build #2517; schema …
11:21 AM Changeset [2521] by Johan Enell
supports annotation parameter
8:39 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) updated by Nicklas Nordborg
Status changed
8:32 AM Changeset [2520] by Nicklas Nordborg
Updated documentation that contained errors or wasn't up to date with …

Aug 14, 2006:

4:22 PM Changeset [2519] by Johan Enell
will remove stdin/stdout if specified by config
2:30 PM Changeset [2518] by Nicklas Nordborg
Fixes #170: Categorize annotation types
2:30 PM Ticket #170 (Categorize annotation types) closed by Nicklas Nordborg
fixed: (In [2518]) Fixes #170: Categorize annotation types
12:07 PM Changeset [2517] by Nicklas Nordborg
References #170: Install now sets correct permissions for categories
11:52 AM Changeset [2516] by Nicklas Nordborg
References #170: Categorize annotation types Updated UML diagram
11:50 AM Changeset [2515] by Nicklas Nordborg
References #170: Categorize annotation types Most of the core and web …
8:05 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) updated by Nicklas Nordborg
Milestone, Owner changed
There are some info that doesn't make sense to average. Spot images is …

Aug 12, 2006:

11:38 PM Ticket #10 (Analysis: Hierarchical clustering) updated by Jari Häkkinen
Status, Owner changed
11:37 PM Ticket #150 (Affymetrix support) closed by Jari Häkkinen
fixed: * The resulting expression matrix is still not available as a file and …
11:33 PM DownloadPage edited by Jari Häkkinen
New packaged release (revision 2514). (diff)
12:18 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) created by base
When viewing avg of spots in experiment explorer under reporter view, …

Aug 11, 2006:

2:15 PM Ticket #127 (Experiment explorer) closed by Nicklas Nordborg
fixed: (In [2514]) Fixes #127: Experiment explorer
2:15 PM Changeset [2514] by Nicklas Nordborg
Fixes #127: Experiment explorer
8:15 AM Changeset [2513] by Nicklas Nordborg
Do not show message about configurations for non-configurable plugins. …

Aug 10, 2006:

1:15 PM Ticket #305 (delete recusively) updated by Martin Svensson
Status changed
12:18 PM Ticket #318 (Plugin configuration values are not stored for a job) created by Nicklas Nordborg
Consider the following case: A user selects a plugin and …
12:08 PM Ticket #305 (delete recusively) updated by Nicklas Nordborg
Owner, Milestone changed
12:07 PM Ticket #217 (Delete entire directory structure) closed by Nicklas Nordborg
duplicate: Is part of #305: delete recusively
11:54 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) closed by Nicklas Nordborg
fixed: (In [2512]) Fixes #302: Running a plugin without a configuration …
11:54 AM Changeset [2512] by Nicklas Nordborg
Fixes #302: Running a plugin without a configuration should not be possible
9:36 AM Ticket #39 (Handling a string with only blank space in required fields) closed by Martin Svensson
fixed: (In [2511]) Fixes #39 Handling a string with only blank space in …
9:36 AM Changeset [2511] by Martin Svensson
Fixes #39 Handling a string with only blank space in required fields. …
8:17 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by Nicklas Nordborg
Status changed
8:16 AM Changeset [2510] by Nicklas Nordborg
Fixes #306: empty trashcan
8:16 AM Ticket #306 (empty trashcan) closed by Nicklas Nordborg
fixed: (In [2510]) Fixes #306: empty trashcan

Aug 9, 2006:

4:53 PM Ticket #39 (Handling a string with only blank space in required fields) updated by Martin Svensson
(In [2509]) References #39 Handling a string with only blank space in …
4:53 PM Changeset [2509] by Martin Svensson
References #39 Handling a string with only blank space in required …
4:15 PM Ticket #39 (Handling a string with only blank space in required fields) updated by Martin Svensson
Owner, Status changed
3:54 PM Ticket #306 (empty trashcan) updated by Nicklas Nordborg
Milestone, Status changed
3:48 PM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by Nicklas Nordborg
Milestone changed
3:30 PM Ticket #317 (Display and enter dates in different formats) updated by Johan Enell
The new format should also include time if possible.
2:59 PM Changeset [2508] by Martin Svensson
Fixes #315 Ctrl + clicking on the name of an images - opens two edit …
2:59 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) closed by Martin Svensson
fixed: (In [2508]) Fixes #315 Ctrl + clicking on the name of an images - …
2:54 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) updated by Martin Svensson
Status changed
2:46 PM Ticket #317 (Display and enter dates in different formats) created by Nicklas Nordborg
Add support in the web client for displaying and entering dates in …
2:45 PM Ticket #316 (Add support for color coding in data tables) created by Nicklas Nordborg
Base1 has a nice feature where ratios are displayed with a colored …
2:40 PM Ticket #313 (Error handling in import plugins) updated by Nicklas Nordborg
Maybe this should be configurable at the job level. Ie. the user could …
2:35 PM Ticket #266 (Strange mouse-over message in some places) closed by Martin Svensson
fixed: (In [2507]) Fixes #266 Strange mouse-over message in some places. view …
2:35 PM Changeset [2507] by Martin Svensson
Fixes #266 Strange mouse-over message in some places. view pages updated.
2:33 PM Ticket #170 (Categorize annotation types) updated by Nicklas Nordborg
(In [2506]) References #170: Categorize annotation types Updated UML …
2:33 PM Changeset [2506] by Nicklas Nordborg
References #170: Categorize annotation types Updated UML diagram
2:12 PM Ticket #170 (Categorize annotation types) updated by Nicklas Nordborg
Status changed
2:10 PM Changeset [2505] by Johan Enell
plugin parameters removed only job parameters
1:37 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) created by Martin Svensson
1:33 PM Changeset [2504] by Nicklas Nordborg
Fixed problem with execution time estimation.
1:20 PM Ticket #266 (Strange mouse-over message in some places) updated by Martin Svensson
(In [2503]) References #266 Strange mouse-over message in some places. …
1:20 PM Changeset [2503] by Martin Svensson
References #266 Strange mouse-over message in some places. file-, …
1:03 PM Ticket #127 (Experiment explorer) updated by Nicklas Nordborg
(In [2502]) References #127: Experiment explorer Cleaned up and …
1:03 PM Changeset [2502] by Nicklas Nordborg
References #127: Experiment explorer Cleaned up and documented most …
11:17 AM Ticket #266 (Strange mouse-over message in some places) updated by Martin Svensson
(In [2501]) References #266 Strange mouse-over message in some places. …
11:17 AM Changeset [2501] by Martin Svensson
References #266 Strange mouse-over message in some places. …
10:36 AM Changeset [2500] by Martin Svensson
References # 266 Strange mouse-over message in some places. …

Aug 8, 2006:

4:09 PM Changeset [2499] by Nicklas Nordborg
Fixed problem with the new update method.
4:01 PM Ticket #314 (Update documentation that shows code examples with ...) closed by Nicklas Nordborg
fixed: (In [2498]) Fixes #314: Update documentation that shows code examples …
4:01 PM Changeset [2498] by Nicklas Nordborg
Fixes #314: Update documentation that shows code examples with …
3:58 PM Ticket #266 (Strange mouse-over message in some places) updated by Martin Svensson
Status changed
3:58 PM Ticket #266 (Strange mouse-over message in some places) updated by Martin Svensson
Owner changed
3:49 PM Ticket #314 (Update documentation that shows code examples with ...) updated by Nicklas Nordborg
Status changed
3:43 PM Changeset [2497] by Nicklas Nordborg
Better performance when creating a root bioassayset by fetching the …
2:55 PM Changeset [2496] by Nicklas Nordborg
Deleted obsolete files related to the removed AffyFeatureData class.
2:52 PM Ticket #173 (Attach Hardware/Software to more items) closed by Martin Svensson
fixed: (In [2495]) Fixes #173 Fully functional to create/delete HardwareType
2:52 PM Changeset [2495] by Martin Svensson
Fixes #173 Fully functional to create/delete HardwareType and attach …
1:35 PM Ticket #314 (Update documentation that shows code examples with ...) created by Nicklas Nordborg
The Transformation.newProduct() method changed because of ticket #196. …
1:20 PM Changeset [2494] by Nicklas Nordborg
* Fixed problem with FlatFileParser skipping every other section. * …
1:13 PM Changeset [2493] by dominic
gui changes and removal of default categories in install.java
12:57 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) closed by Nicklas Nordborg
fixed: (In [2492]) Fixes #196: Transformation.newProduct should create child …
12:57 PM Changeset [2492] by Nicklas Nordborg
Fixes #196: Transformation.newProduct should create child BioAssays if …
11:36 AM DownloadPage edited by Jari Häkkinen
Updated demo server to revision 2491 (diff)
11:14 AM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) updated by Nicklas Nordborg
Status changed
9:51 AM Changeset [2491] by Nicklas Nordborg
Fixes #168: Use formulas in table listings of bioassay data
9:51 AM Ticket #168 (Use formulas in table listings of bioassay data) closed by Nicklas Nordborg
fixed: (In [2491]) Fixes #168: Use formulas in table listings of bioassay data
9:31 AM Ticket #127 (Experiment explorer) updated by Nicklas Nordborg
Priority changed
9:30 AM Ticket #168 (Use formulas in table listings of bioassay data) updated by Nicklas Nordborg
Status, Priority changed
9:29 AM Ticket #127 (Experiment explorer) updated by Nicklas Nordborg
(In [2490]) References #127: Experiment explorer * Added …
9:29 AM Changeset [2490] by Nicklas Nordborg
References #127: Experiment explorer * Added annotations, support …

Aug 7, 2006:

3:49 PM Changeset [2489] by Jari Häkkinen
Added PostgreSQL setup information.
2:36 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by Jari Häkkinen
Milestone changed
2:32 PM Ticket #189 (Allow export plugins to send download immediately to client) updated by Jari Häkkinen
Milestone changed
2:31 PM Ticket #169 (Use formulas for creating extra values) updated by Jari Häkkinen
Milestone changed
2:26 PM Ticket #172 (Add externalId property to annotation type) updated by Jari Häkkinen
Milestone changed
2:25 PM Ticket #108 (Logging the change history of an item) updated by Jari Häkkinen
Milestone changed
12:13 PM Changeset [2488] by Nicklas Nordborg
Fixed sorting problem with always visible columns

Aug 4, 2006:

2:33 PM Ticket #127 (Experiment explorer) updated by Nicklas Nordborg
(In [2487]) References #127: Experiment explorer First version. A lot …
2:33 PM Changeset [2487] by Nicklas Nordborg
References #127: Experiment explorer First version. A lot of the code …
2:15 PM Ticket #313 (Error handling in import plugins) created by Johan Enell
The reporter importer (and pobably others) fails when there is to long …
1:54 PM Ticket #312 (ReporterType import) created by Johan Enell
ReporterFlatFileImporter assumes that every reporter in the file has …

Aug 3, 2006:

5:20 PM Ticket #173 (Attach Hardware/Software to more items) updated by Martin Svensson
(In [2486]) References #173. Possible to attach a hardware to a …
5:20 PM Changeset [2486] by Martin Svensson
References #173. Possible to attach a hardware to a PlateEvent in the GUI
1:03 PM Changeset [2485] by Johan Enell
Position batcher added
10:48 AM Ticket #311 (Allow parsing of numbers with different locale settings) created by Nicklas Nordborg
The problem can arise in the FlatFileParser and it's different Mapper …
8:41 AM Changeset [2484] by Martin Svensson
Refrences #173 A hardware can now be attach to a Hybridization in the GUI.
8:35 AM Ticket #309 (count spots in bioassayset) closed by Nicklas Nordborg
fixed: (In [2483]) Fixes #309: count spots in bioassayset
8:35 AM Changeset [2483] by Nicklas Nordborg
Fixes #309: count spots in bioassayset
8:35 AM Ticket #309 (count spots in bioassayset) updated by Nicklas Nordborg
Milestone, Status changed
7:59 AM Changeset [2482] by Nicklas Nordborg
Fixes #310: Permission denied on raw bioassay
7:59 AM Ticket #310 (Permission denied on raw bioassay) closed by Nicklas Nordborg
fixed: (In [2482]) Fixes #310: Permission denied on raw bioassay
7:58 AM Ticket #310 (Permission denied on raw bioassay) updated by Nicklas Nordborg
Milestone, Status changed

Aug 2, 2006:

4:23 PM Ticket #264 (Base1 plug-in executer enhancements) updated by Johan Enell
Status changed
Can now import data and create new bioassays
2:39 PM Ticket #310 (Permission denied on raw bioassay) created by Johan Enell
I get a permission denied when clicking on a raw bioassay. The owned …
1:59 PM Changeset [2481] by Johan Enell
Base1PluginExecuter can now export data to base1 plug-in and import from it
12:57 PM Ticket #309 (count spots in bioassayset) created by Johan Enell
If a BioAssaySet only has spot data the spot count is wrong.
11:21 AM Changeset [2480] by Martin Svensson
Updated db schema_version and correct comments in BioMaterialEvent and …
9:40 AM Changeset [2479] by Martin Svensson
References #173 Made it possible to attach a Hardware item to …
9:40 AM Ticket #173 (Attach Hardware/Software to more items) updated by Martin Svensson
(In [2479]) References #173 Made it possible to attach a Hardware item …
9:11 AM Changeset [2478] by Martin Svensson
Fixed a corrupt link
8:15 AM Ticket #307 (display of annotation type to users from administrate page) closed by Nicklas Nordborg
invalid: In the view/presets dropdown one has to select the 'Shared to me' …
8:09 AM Ticket #308 (Firefox unresponsive script warning when uploading files) updated by Nicklas Nordborg
I can not reproduce this with Firefox version 1.5.0.3 on Linux. I …

Aug 1, 2006:

8:46 PM Ticket #307 (display of annotation type to users from administrate page) updated by Nicklas Nordborg
Milestone changed
8:46 PM Ticket #308 (Firefox unresponsive script warning when uploading files) updated by Nicklas Nordborg
Component, Milestone changed
7:19 PM Ticket #308 (Firefox unresponsive script warning when uploading files) created by msettles@…
When uploading affymetrix .CEL files, upload process occurs in …
4:13 PM Ticket #307 (display of annotation type to users from administrate page) created by rocca@…
I have noted the following: When creating a new user and setting the …
2:16 PM Changeset [2477] by Martin Svensson
Created an association between BiomaterialEventData-HardwareData and …
1:43 PM Ticket #306 (empty trashcan) created by Johan Enell
When you want to empty the trashcan you have to mark every item (max …
1:39 PM Ticket #305 (delete recusively) created by Johan Enell
When items are presented in a tree view (the analyse tree and the file …
8:34 AM Ticket #173 (Attach Hardware/Software to more items) updated by Martin Svensson
Status changed
8:26 AM Ticket #127 (Experiment explorer) updated by Nicklas Nordborg
Status changed
8:13 AM Changeset [2476] by Martin Svensson
Fixes #304 An empty list page is viewed when changing the …
8:13 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) closed by Martin Svensson
fixed: (In [2476]) Fixes #304 An empty list page is viewed when changing the …

Jul 31, 2006:

5:59 PM Changeset [2475] by dominic
Fixed issues from feedbacks: code comments and patterns, standards …
3:53 PM Ticket #263 (Update to latest versions of 3rd-party software) closed by Nicklas Nordborg
fixed: (In [2474]) Fixes #263: Update to latest versions of 3rd-party …
3:52 PM Changeset [2474] by Nicklas Nordborg
Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) updated by Martin Svensson
Status changed
11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) created by Martin Svensson
Precondition: Viewing items that's "Owned by me" and "Shared to me" …
9:12 AM Ticket #263 (Update to latest versions of 3rd-party software) updated by Nicklas Nordborg
Status changed
9:11 AM Ticket #303 (News items are not shown in View -> home page) updated by Nicklas Nordborg
Milestone changed
9:11 AM Ticket #303 (News items are not shown in View -> home page) closed by Nicklas Nordborg
fixed: (In [2473]) Fixes #303: News items are not shown in View -> home page …
9:11 AM Changeset [2473] by Nicklas Nordborg
Fixes #303: News items are not shown in View -> home page Needed a …
9:03 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) updated by Nicklas Nordborg
Component, Milestone, Owner changed
Some plugins doesn't require a configuration. For example the existing …
8:43 AM Changeset [2472] by Martin Svensson
Added pool button for samples, extracts and labeledextracts.

Jul 26, 2006:

11:59 PM Changeset [2471] by Jari Häkkinen
Creating tab2mage export branch for Dominic.
Note: See TracTimeline for information about the timeline view.