Timeline
Aug 17, 2006:
- 3:43 PM Ticket #222 (Automated test program suite for enhanced test procedure) closed by
- fixed: (In [2548]) Fixes #222: Automated test program suite for enhanced test …
- 3:43 PM Changeset [2548] by
- Fixes #222: Automated test program suite for enhanced test procedure
- 2:23 PM Changeset [2547] by
- exports annotations
- 2:23 PM Changeset [2546] by
- made getIdFromPath public
- 11:49 AM Changeset [2545] by
- Now handles the case with a null reporter correctly
- 11:48 AM Changeset [2544] by
- Fixed index problem when linking to plates/wells (use 0-based instead …
- 11:47 AM Changeset [2543] by
- Let superclass handle error reporting
- 11:47 AM Changeset [2542] by
- Fixed equals() method to behave as documented
- 11:45 AM Changeset [2541] by
- Better error reportering which include line number in most error messages
- 11:44 AM Changeset [2540] by
- Added line number info to FlatFileParser?.Line object
- 11:09 AM Changeset [2539] by
- * FlatFileParse? now ignores comment lines within the data section. * …
- 11:08 AM Changeset [2538] by
- Fixed bad link on Run plugin button
- 10:39 AM Changeset [2537] by
- Fixes #324: Filter feature on block results in error message
- 10:39 AM Ticket #324 (Filter feature on block results in error message) closed by
- fixed: (In [2537]) Fixes #324: Filter feature on block results in error message
- 9:13 AM Ticket #325 (Corrupt page when viewing an biomaterial event) created by
- Logg in with user permissions. View a sample that's shared to you. Go …
Aug 16, 2006:
- 4:02 PM Ticket #324 (Filter feature on block results in error message) created by
- could not resolve property: block of: …
- 12:05 PM Changeset [2536] by
- Fixes #197: Submenu onClick
- 12:05 PM Ticket #197 (Submenu onClick) closed by
- fixed: (In [2536]) Fixes #197: Submenu onClick
- 11:49 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) closed by
- fixed: (In [2535]) Fixes #319: Spot images shown in experiment explorer do …
- 11:49 AM Changeset [2535] by
- Fixes #319: Spot images shown in experiment explorer do not seem to …
- 11:01 AM Changeset [2534] by
- Fixes problem with disappearing buttons and page width in Plot tool.
- 9:46 AM Changeset [2533] by
- Fixes #323 Corrupt link in Samples->'The sample'->Event
- 9:46 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) closed by
- fixed: (In [2533]) Fixes #323 Corrupt link in Samples->'The sample'->Event
- 9:27 AM Changeset [2532] by
- Fixed link to bioassayset tools when viewing a transformation.
- 9:15 AM Changeset [2531] by
- Experiment explorer can now handle the case with zero matching reporters
- 9:04 AM Changeset [2530] by
- Added caching for AnnotationTypeCategoryData? as specified
- 9:03 AM Ticket #323 (Corrupt link in Samples->'The sample'->Event) created by
- Logged in as a normal user. Link to protocol on view_event_page. …
- 9:02 AM Ticket #131 (Write documentation 4a) Schematic overview of BASE) closed by
- fixed: (In [2529]) Fixes #131: Write documentation 4a) Schematic overview of BASE
- 9:02 AM Changeset [2529] by
- Fixes #131: Write documentation 4a) Schematic overview of BASE
Aug 15, 2006:
- 10:19 PM Ticket #322 (Wrong message when not all item could be restored) closed by
- fixed: (In [2528]) Fixes #322 Wrong message when not all item could be restored
- 10:19 PM Changeset [2528] by
- Fixes #322 Wrong message when not all item could be restored
- 4:49 PM Changeset [2527] by
- missed a null check
- 4:35 PM Ticket #305 (delete recusively) closed by
- fixed: (In [2526]) Fixes #305 Delete recursively. Implemented for …
- 4:35 PM Changeset [2526] by
- Fixes #305 Delete recursively. Implemented for Directories, …
- 4:12 PM Ticket #322 (Wrong message when not all item could be restored) created by
- If the user doesn't have permission to restore an item the dialog …
- 3:47 PM Changeset [2525] by
- References #131: Write documentation 3a) Schematic overview of BASE …
- 3:41 PM Changeset [2524] by
- Compile JSP pages with more memeory since we got an OutOfMemoryError? …
- 3:40 PM Ticket #321 (Error on filter page: NoSuchMethod) closed by
- fixed: (In [2523]) Fixes #321: Error on filter page: NoSuchMethod? And two …
- 3:40 PM Changeset [2523] by
- Fixes #321: Error on filter page: NoSuchMethod? And two other …
- 2:52 PM Ticket #321 (Error on filter page: NoSuchMethod) created by
- When I try the ' java.lang.NoSuchMethodError? on page …
- 1:17 PM Ticket #320 (Nullpointer in experiment explorer) closed by
- fixed: (In [2522]) Fixes #320
- 1:17 PM Changeset [2522] by
- Fixes #320
- 12:04 PM Ticket #320 (Nullpointer in experiment explorer) created by
- When choosing annotation. Base version 2.0 (build #2517; schema …
- 11:21 AM Changeset [2521] by
- supports annotation parameter
- 8:32 AM Changeset [2520] by
- Updated documentation that contained errors or wasn't up to date with …
Aug 14, 2006:
- 4:22 PM Changeset [2519] by
- will remove stdin/stdout if specified by config
- 2:30 PM Changeset [2518] by
- Fixes #170: Categorize annotation types
- 2:30 PM Ticket #170 (Categorize annotation types) closed by
- fixed: (In [2518]) Fixes #170: Categorize annotation types
- 12:07 PM Changeset [2517] by
- References #170: Install now sets correct permissions for categories
- 11:52 AM Changeset [2516] by
- References #170: Categorize annotation types Updated UML diagram
- 11:50 AM Changeset [2515] by
- References #170: Categorize annotation types Most of the core and web …
Aug 12, 2006:
- 11:37 PM Ticket #150 (Affymetrix support) closed by
- fixed: * The resulting expression matrix is still not available as a file and …
- 11:33 PM DownloadPage edited by
- New packaged release (revision 2514). (diff)
- 12:18 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) created by
- When viewing avg of spots in experiment explorer under reporter view, …
Aug 11, 2006:
- 2:15 PM Ticket #127 (Experiment explorer) closed by
- fixed: (In [2514]) Fixes #127: Experiment explorer
- 2:15 PM Changeset [2514] by
- Fixes #127: Experiment explorer
- 8:15 AM Changeset [2513] by
- Do not show message about configurations for non-configurable plugins. …
Aug 10, 2006:
- 12:18 PM Ticket #318 (Plugin configuration values are not stored for a job) created by
- Consider the following case: A user selects a plugin and …
- 12:07 PM Ticket #217 (Delete entire directory structure) closed by
- duplicate: Is part of #305: delete recusively
- 11:54 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) closed by
- fixed: (In [2512]) Fixes #302: Running a plugin without a configuration …
- 11:54 AM Changeset [2512] by
- Fixes #302: Running a plugin without a configuration should not be possible
- 9:36 AM Ticket #39 (Handling a string with only blank space in required fields) closed by
- fixed: (In [2511]) Fixes #39 Handling a string with only blank space in …
- 9:36 AM Changeset [2511] by
- Fixes #39 Handling a string with only blank space in required fields. …
- 8:16 AM Changeset [2510] by
- Fixes #306: empty trashcan
- 8:16 AM Ticket #306 (empty trashcan) closed by
- fixed: (In [2510]) Fixes #306: empty trashcan
Aug 9, 2006:
- 4:53 PM Changeset [2509] by
- References #39 Handling a string with only blank space in required …
- 2:59 PM Changeset [2508] by
- Fixes #315 Ctrl + clicking on the name of an images - opens two edit …
- 2:59 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) closed by
- fixed: (In [2508]) Fixes #315 Ctrl + clicking on the name of an images - …
- 2:46 PM Ticket #317 (Display and enter dates in different formats) created by
- Add support in the web client for displaying and entering dates in …
- 2:45 PM Ticket #316 (Add support for color coding in data tables) created by
- Base1 has a nice feature where ratios are displayed with a colored …
- 2:35 PM Ticket #266 (Strange mouse-over message in some places) closed by
- fixed: (In [2507]) Fixes #266 Strange mouse-over message in some places. view …
- 2:35 PM Changeset [2507] by
- Fixes #266 Strange mouse-over message in some places. view pages updated.
- 2:33 PM Changeset [2506] by
- References #170: Categorize annotation types Updated UML diagram
- 2:10 PM Changeset [2505] by
- plugin parameters removed only job parameters
- 1:37 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) created by
- 1:33 PM Changeset [2504] by
- Fixed problem with execution time estimation.
- 1:20 PM Changeset [2503] by
- References #266 Strange mouse-over message in some places. file-, …
- 1:03 PM Changeset [2502] by
- References #127: Experiment explorer Cleaned up and documented most …
- 11:17 AM Changeset [2501] by
- References #266 Strange mouse-over message in some places. …
- 10:36 AM Changeset [2500] by
- References # 266 Strange mouse-over message in some places. …
Aug 8, 2006:
- 4:09 PM Changeset [2499] by
- Fixed problem with the new update method.
- 4:01 PM Ticket #314 (Update documentation that shows code examples with ...) closed by
- fixed: (In [2498]) Fixes #314: Update documentation that shows code examples …
- 4:01 PM Changeset [2498] by
- Fixes #314: Update documentation that shows code examples with …
- 3:43 PM Changeset [2497] by
- Better performance when creating a root bioassayset by fetching the …
- 2:55 PM Changeset [2496] by
- Deleted obsolete files related to the removed AffyFeatureData? class.
- 2:52 PM Ticket #173 (Attach Hardware/Software to more items) closed by
- fixed: (In [2495]) Fixes #173 Fully functional to create/delete HardwareType? …
- 2:52 PM Changeset [2495] by
- Fixes #173 Fully functional to create/delete HardwareType? and attach …
- 1:35 PM Ticket #314 (Update documentation that shows code examples with ...) created by
- The Transformation.newProduct() method changed because of ticket #196. …
- 1:20 PM Changeset [2494] by
- * Fixed problem with FlatFileParser? skipping every other section. * …
- 1:13 PM Changeset [2493] by
- gui changes and removal of default categories in install.java
- 12:57 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) closed by
- fixed: (In [2492]) Fixes #196: Transformation.newProduct should create child …
- 12:57 PM Changeset [2492] by
- Fixes #196: Transformation.newProduct should create child BioAssays? if …
- 11:36 AM DownloadPage edited by
- Updated demo server to revision 2491 (diff)
- 9:51 AM Changeset [2491] by
- Fixes #168: Use formulas in table listings of bioassay data
- 9:51 AM Ticket #168 (Use formulas in table listings of bioassay data) closed by
- fixed: (In [2491]) Fixes #168: Use formulas in table listings of bioassay data
- 9:29 AM Changeset [2490] by
- References #127: Experiment explorer * Added annotations, support …
Aug 7, 2006:
- 3:49 PM Changeset [2489] by
- Added PostgreSQL setup information.
- 12:13 PM Changeset [2488] by
- Fixed sorting problem with always visible columns
Aug 4, 2006:
- 2:33 PM Changeset [2487] by
- References #127: Experiment explorer First version. A lot of the code …
- 2:15 PM Ticket #313 (Error handling in import plugins) created by
- The reporter importer (and pobably others) fails when there is to long …
- 1:54 PM Ticket #312 (ReporterType import) created by
- ReporterFlatFileImporter? assumes that every reporter in the file has …
Aug 3, 2006:
- 5:20 PM Changeset [2486] by
- References #173. Possible to attach a hardware to a PlateEvent? in the GUI
- 1:03 PM Changeset [2485] by
- Position batcher added
- 10:48 AM Ticket #311 (Allow parsing of numbers with different locale settings) created by
- The problem can arise in the FlatFileParser? and it's different Mapper …
- 8:41 AM Changeset [2484] by
- Refrences #173 A hardware can now be attach to a Hybridization in the GUI.
- 8:35 AM Ticket #309 (count spots in bioassayset) closed by
- fixed: (In [2483]) Fixes #309: count spots in bioassayset
- 8:35 AM Changeset [2483] by
- Fixes #309: count spots in bioassayset
- 7:59 AM Changeset [2482] by
- Fixes #310: Permission denied on raw bioassay
- 7:59 AM Ticket #310 (Permission denied on raw bioassay) closed by
- fixed: (In [2482]) Fixes #310: Permission denied on raw bioassay
Aug 2, 2006:
- 2:39 PM Ticket #310 (Permission denied on raw bioassay) created by
- I get a permission denied when clicking on a raw bioassay. The owned …
- 1:59 PM Changeset [2481] by
- Base1PluginExecuter can now export data to base1 plug-in and import from it
- 12:57 PM Ticket #309 (count spots in bioassayset) created by
- If a BioAssaySet? only has spot data the spot count is wrong.
- 11:21 AM Changeset [2480] by
- Updated db schema_version and correct comments in BioMaterialEvent? and …
- 9:40 AM Changeset [2479] by
- References #173 Made it possible to attach a Hardware item to …
- 9:11 AM Changeset [2478] by
- Fixed a corrupt link
- 8:15 AM Ticket #307 (display of annotation type to users from administrate page) closed by
- invalid: In the view/presets dropdown one has to select the 'Shared to me' …
Aug 1, 2006:
- 7:19 PM Ticket #308 (Firefox unresponsive script warning when uploading files) created by
- When uploading affymetrix .CEL files, upload process occurs in …
- 4:13 PM Ticket #307 (display of annotation type to users from administrate page) created by
- I have noted the following: When creating a new user and setting the …
- 2:16 PM Changeset [2477] by
- Created an association between BiomaterialEventData?-HardwareData? and …
- 1:43 PM Ticket #306 (empty trashcan) created by
- When you want to empty the trashcan you have to mark every item (max …
- 1:39 PM Ticket #305 (delete recusively) created by
- When items are presented in a tree view (the analyse tree and the file …
- 8:13 AM Changeset [2476] by
- Fixes #304 An empty list page is viewed when changing the …
- 8:13 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) closed by
- fixed: (In [2476]) Fixes #304 An empty list page is viewed when changing the …
Jul 31, 2006:
- 5:59 PM Changeset [2475] by
- Fixed issues from feedbacks: code comments and patterns, standards …
- 3:53 PM Ticket #263 (Update to latest versions of 3rd-party software) closed by
- fixed: (In [2474]) Fixes #263: Update to latest versions of 3rd-party …
- 3:52 PM Changeset [2474] by
- Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
- 11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) created by
- Precondition: Viewing items that's "Owned by me" and "Shared to me" …
- 9:11 AM Ticket #303 (News items are not shown in View -> home page) closed by
- fixed: (In [2473]) Fixes #303: News items are not shown in View -> home page …
- 9:11 AM Changeset [2473] by
- Fixes #303: News items are not shown in View -> home page Needed a …
- 8:43 AM Changeset [2472] by
- Added pool button for samples, extracts and labeledextracts.
Jul 26, 2006:
- 11:59 PM Changeset [2471] by
- Creating tab2mage export branch for Dominic.
Jul 22, 2006:
- 2:26 PM Changeset [2470] by
- Fixed spelling for 'successfully'.
- 11:17 AM Ticket #303 (News items are not shown in View -> home page) created by
- 7:48 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) created by
- and is not. However the behaviour of BASE should be changed in this …
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